Cbil017506.1
Basic Information
- Insect
- Clanis bilineata
- Gene Symbol
- -
- Assembly
- GCA_036417725.1
- Location
- CM071157.1:14246797-14257983[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.006 0.41 11.7 0.5 1 23 298 320 298 320 0.97 2 12 0.00013 0.0089 17.0 1.1 2 23 328 349 327 349 0.95 3 12 0.0013 0.088 13.8 0.5 1 23 353 375 353 375 0.98 4 12 0.0061 0.42 11.7 2.3 1 23 380 403 380 403 0.98 5 12 0.0003 0.021 15.8 0.3 1 23 407 430 407 430 0.94 6 12 0.0057 0.39 11.8 0.2 2 21 451 470 451 475 0.92 7 12 0.0002 0.013 16.4 1.5 3 23 485 506 485 506 0.98 8 12 0.042 2.9 9.1 0.3 2 23 526 548 525 548 0.96 9 12 1.7e-05 0.0011 19.8 1.7 1 23 559 581 559 581 0.98 10 12 0.0001 0.0068 17.3 2.8 1 23 587 609 587 609 0.98 11 12 2 1.4e+02 3.8 5.4 1 21 615 635 615 637 0.93 12 12 0.00021 0.014 16.3 0.2 1 23 643 666 643 666 0.98
Sequence Information
- Coding Sequence
- atggAGTACGTGAAAGTTTGTAGAATATGTTTAATGGTTAATGTAAAGATGTATGACCTGCACACTCATCCTTTGGAGACCTGTTTTGTGAATTTAACTGGAATAGAACTTCAGAACACAGCAGAATTACCACCATACGCTTGCTACCAGTGTGCTGCTCTATTAATGAAAATTTACAAATTCAAAGAGTTGTGTTATATAGGGCACAACACTCTTTATGATATATTTAACACCACTGGAAAGataACAGAAAATGCAATTTTTGGAGTAGATAGGAGGAGCTTGCAACTATCTCAGTTTACTATCGAAGGATCCCGTAAGCCAGATATTTTCCATATATGCATATATAATGAGGATACGCAGTTCATGAAACCTCAAAATATAAAAGTAGAGTCTAAAGTAGAACACAAATCTTCTTATCAAACTGAAGAGGATGTTTTTGTAAAGGCAGAAGTTTATGAAAACTTGCCAACACTTTCTAGTGATGATGAACTGTTATCTCTGCACAAAACtaataaagaaaagaaagttaAAAAGAAGGAAAAGAAAAAGGTGAAAAAAGTAAGACCTAAGATAttggatgatgatgacgatgatgatgaaatttataAAGAGTTGGAAGAAGTGTTGCCTTCAGCTGACCTGACTGAATCGCAAATAGAAATGCTAGAGACAGCTTTGGATCCCAGTATTAAGTGGCGAAAGTCTAAAACTCCTGTTGTCCCACCACCAAAGCCTGCGCCCCAACCCAGGCGGACCAGGCACACTGGCAAAGTGTCCCAAAACCTAATCGAGTTGGAGGAATACGTCACCATCATCACGTTATCGATGGAAGAGCAACAGCAGGAGATCATCAACCGCCAACATTCTGCGAACTACAAGAACGCACTGTTCCAATGCAAGCTCTGCTACAAGGGATTCATAGACTCCGCTGCCTGGGACCATCATGTAGCCAAACATGATCCTAGCGCTGGCGACATAGAGTGTCCGATATGCAAGTTCAGGTTTAAATCGAAGCGTATGCTGCAGAAACACGCCTCCAACCATGAGAAGAAGTATTCTTGCAAAGTTTGTCCTTACGTCTCTAAGACTCCAACGCAAGCGAAACAACATCAAAAATGGCATCAAGGCGTCACATACAAATGCCGGCATTGTGATGAAATATCAACaaaatgGACATCATATTTGAGTCACGTGAGGATAAAACACCCATCGGAGTTCATTTGCGACATATGTGGGTACTCGTTCGTCAGTAAACTGGGACTGACCATGCACAAGACGATGATGCACAAAAACTTTACTCCCCCTCAGGCTCAGACGGACGGCGATGTTGAGATAGAACCAGGTCCGTACTGCCAGGAATGTGACCTCAAGTTCATATCCGAGGAGGCGTGGAAGCGGCACATGGTCACCTCTATCAAGCACTTGGAAGCTTCCAATTTTAAAAACGGGTGTAGACAGTGTGGCGAAGTATTCAGCAATACTGAGGAGTTGAGGATCCATCACAGGAAGGAGCACGCGAAGAAACGGCCCGTGAACTACGGAAAGAAACCCAACATCATGAACTGGCCGACCAAATGTGAACATTGCCCAGAAGAGATCGCTAACGCGCGGGACTATTGGGCCCACTTCAGGAGGATGCACCCCGACAAACGGTACCCCATACAGAAGAACCATGTCTGCGACATTTGCGGCAAGAGTTTTAGGGGCAACGCGTTCCTGATGTACCACAAGCGCACGCACTCGTCGGAGAAGCAGTTCTCGTGCGGGTCCTGCGGCAAGGCGTTCTACAACCGCACCAACCTGCACATGCACGAGAAGACGCACTCCGACCTGCGCCCCTACCCCTGCTCCGTCTGCTTCAAGGCGTTCAAGTGCAAGGGCGCGCTCGACAGGCACTTCCGGTGCCACACCGGCGTGAAGCCGTACATATGCGAGGTGTGCGGCAAGGGGTTCGGGCAGTCGAACAGCCGCAAGCTGCACGTGCGCACCGTGCACCTCAAGCAGCCCGCGCCGTACGTGAGCCAGGCGCGGCTCGAGCGGCGCGCCAGGACCAGGGAACACTCGCTGCCGCCCTTCTAG
- Protein Sequence
- MEYVKVCRICLMVNVKMYDLHTHPLETCFVNLTGIELQNTAELPPYACYQCAALLMKIYKFKELCYIGHNTLYDIFNTTGKITENAIFGVDRRSLQLSQFTIEGSRKPDIFHICIYNEDTQFMKPQNIKVESKVEHKSSYQTEEDVFVKAEVYENLPTLSSDDELLSLHKTNKEKKVKKKEKKKVKKVRPKILDDDDDDDEIYKELEEVLPSADLTESQIEMLETALDPSIKWRKSKTPVVPPPKPAPQPRRTRHTGKVSQNLIELEEYVTIITLSMEEQQQEIINRQHSANYKNALFQCKLCYKGFIDSAAWDHHVAKHDPSAGDIECPICKFRFKSKRMLQKHASNHEKKYSCKVCPYVSKTPTQAKQHQKWHQGVTYKCRHCDEISTKWTSYLSHVRIKHPSEFICDICGYSFVSKLGLTMHKTMMHKNFTPPQAQTDGDVEIEPGPYCQECDLKFISEEAWKRHMVTSIKHLEASNFKNGCRQCGEVFSNTEELRIHHRKEHAKKRPVNYGKKPNIMNWPTKCEHCPEEIANARDYWAHFRRMHPDKRYPIQKNHVCDICGKSFRGNAFLMYHKRTHSSEKQFSCGSCGKAFYNRTNLHMHEKTHSDLRPYPCSVCFKAFKCKGALDRHFRCHTGVKPYICEVCGKGFGQSNSRKLHVRTVHLKQPAPYVSQARLERRARTREHSLPPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -