Cced007691.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- -
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010001441.1:1033633-1036785[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.057 4.5 8.1 0.1 2 23 135 154 134 154 0.89 2 17 0.11 8.7 7.1 0.1 1 23 166 189 166 189 0.90 3 17 1.6 1.2e+02 3.5 0.0 2 20 252 270 251 274 0.85 4 17 0.0052 0.41 11.3 0.5 1 20 286 305 286 307 0.94 5 17 1.1 88 4.0 1.6 3 17 314 328 313 334 0.76 6 17 0.17 13 6.6 1.6 2 23 346 368 345 368 0.94 7 17 2.5e-05 0.002 18.6 0.7 2 23 375 396 375 396 0.97 8 17 0.001 0.081 13.6 2.1 1 23 402 424 402 424 0.97 9 17 4.7e-05 0.0037 17.8 0.8 1 23 430 452 430 452 0.99 10 17 0.41 32 5.4 1.7 1 23 463 486 463 487 0.94 11 17 0.001 0.079 13.6 0.3 2 23 505 527 504 527 0.91 12 17 0.0058 0.45 11.2 1.7 1 23 539 561 539 561 0.98 13 17 0.0091 0.71 10.6 1.7 1 23 627 650 627 650 0.98 14 17 0.01 0.81 10.4 0.7 1 23 662 685 662 685 0.95 15 17 0.0011 0.088 13.4 9.1 1 23 695 717 695 717 0.96 16 17 0.041 3.2 8.5 0.1 2 23 769 790 769 790 0.96 17 17 2 1.5e+02 3.2 0.4 1 17 843 859 843 866 0.62
Sequence Information
- Coding Sequence
- ATGCCAGAACGCGTTGGTCCTTTATTACCGAATACAATTTACTTCCAAAAGTCCCGGAATCGCCGACGAACCTACCGACATCATAAAATCCCGATGGACCCACGAAATCAAGTAATCTATCACGTCAGGCAACCCAGTGATGAGTTTACGGAGTCATCGACAGCTGTTACGGATGGTGACAAAAACGGGAACAGCGCTATTAAAGATACCGACACGGTGATGGACAAGAACAGGAAGGGCAGGCCCAAGGGCTCGAAGAACAGGCCACTATTCAACTCGTACAACGACCAGTGCGATAAGCGGTCGTTCGTGTACTCGTTCGCGGGACCGACAAAGTGCAAGTCTTGTAAACGGACGTTTGACGGCGACCCTGTTGTCCACTGTCATGAATACCACAAAACAGAGTGTCCCATATGTGGCCGGATGTACAAACCGCCTTTGACCTCACACATCAAGTCCCACGGAACCCGGCACGTTATACTGACCGTAGACTGCTACGAGTGTTATGACTGCAAGGAAAAATTTGGAAATGCCGATATTATGGCGAAGCACATCCTGGACGAACACGTACAGGCCGGCGAGTATGGGGCCAAAGTCCCTGCGTGCTACATATGCGGCTGGACCACGGGGACTGAACTGGACGATGGTGGCCTCCGGGAGCACATAGCCACAGTCCACGCTGATACTCCAGCACACCTGTTGGACAAACACCTTCACCAGCAGCAGAAAACCGTCACGGCGGTAGTCGGCCTCATGTGCATGCTGTGTGGTATCAAGTTCGGCGATCAGGAGGCCGTCATCGGTCATCTGGTAGACACGCATTGTCCCCGGAAAACGTTCAATCATCCAGCCGTATATAAGTGCCGAATGTGTGGAGCGGGCTTCAAAAGTCAAATAAACGTGCTGCGGCACGCCTGCAATAAAATCAAATCGCCGCACTGCGCCCAGTGTGATAAGACGTTCCCATCGAAAATGCGATACGCGTTCCACTTACAGTTTCACGACGACCACCCCAAGTATGCGACCATGCACCTACATTGTGATCTATGCCTGGCAGAGTTCGACGACGAGTACCACCTGTATGATCATATCCGTTTCCGGCACGAGCTGCACGATAAGGCTGTGTGCGAGACATGCGGCCGGACATTCAAATCATCGATGGGCCTGAACATACACCGCCGATACCATATCGGTTCCCGGAACTTTACATGCAAGTCTTGCAATAAATCGTTTCTGAACAAATCGACGCTCCGGGAACATGAGATCTCGCACATGGACGTGAAACCATTCCAGTGCAACATATGTGGTCAATACCTAAGTCGGGCATCCCGACTTCGATCTCACGTCAAAACGCATCGAGCGGCCGAGTGCACCGAGCAGACTTGCTACAGCTGCAACACGTGTGGGTTCGTGGCACCCAATTTACACTTACTAGCTGGGCACGCGTGCAAGGGACACCACGATAATAGTAGAGACGACAGCATAATTGTAGTCCAATTGTCGTCGGTGGTTAAGTGCGAATTTTGTGACTCCACGTTTGTGAACGCCGAACACCTGAACGCCCACCGAGACGCAGCCCATGCCAACGGCGGCGGTAACGACTCCTCCGAAGCATTTGTTTGCGTCGTGTGTTCGTCCCGGTTTAGCACATACTCCCGGTTAACCACGCACAAATTAACGCATGGCATAAACATGAAATCAATGGAGCAGACCGAAGACGACAATGGACCTGACGACCCTGAGCAGGAAGTGTTGGCTGACCAGGACCGGTTTACCGTGCCACAGTACTTTGCGTGTCAATACTGTGCCAAACGGTGCTTGCATTACACGTACTTTTGCCTGCACCGACGGCTCAAGCATCCACTGGGTGACCTGGCATATAAATGCGACCGATGCTCTATGGACTTTGAAACCTCCTGGAAACTTTCCTATCACAAGAAAACCGTTCACGGTCAATCGTCGGAAGAAAAGATACCAAAAAAATACGAGTGCACCTTGTGCTCTAGAAAATTCGTCAAGATCGGCGCCCTGAACCTGCACAAGACCCGTAGTCACATCGACGTGGGCATTGACGTGTGTAAGTACCTATGCCATCACTGTGGTAAGTTCTTCAGCTCCGAGTGTTCACTGAAAAACCACTCTAAAACGCACGACAGCCACGGAGTCACAGACCCGCCATCGGTTCATACGCCAAAATCACAACCAACGGCCGTCAACCATCAACGAAATCGGTATAGAACGTACAGAAAATCAACTACCACCAATAACTCTGCCGTCAGTGGCAAGCCAACAATTGTCCAGAATTCGTGTCCGTACTGTCCGTATAGCACCGACGAGAAGGCGACATTCATCGATCATGTTACGCGACACATACAGTCAAAATCCATTTCGTTCGTTCCCACCATCACCACCGTCACGCCCACTGACACGACCATGACATCCACTGTCAACTCCACCGTCACGTCCACTGACACGGCCATGCCATTCACTGTTAACACCACCATCAGCTTCCCGAAACCCGATATTTTTCGATGCCAATTGTGTGACGTGGAATTTTACGAGACCGTCCAGCTCTTCAGGGTCCACCTGGAAAATCATGCGGACTCTGGCGAAACGCTCTTGTGCCGGTCGTGTTATGTGCCGTTTACATCGTCCATCGCACTTGACATGCATCGGCACGAGACAGCTTTGTGCGGCCAACGTCCCGACGTCCGGTTCGTAGACGTCGGTAACCGTGGTGAAGACTGCGAAACTGACGACCAGACCATTATCCAACCACCTTTGGTTGTTGACTGTGCGAAAATATTCAAAGACGAGCCATCACTGTCGCCGTTATCTTCAAGTATGCCTGACACTTTTGTGGCACCCGAGTCGGACTTCGTTTTGGCACCCAAGTCGGACTCTGTTTTGGTACCCAAACTGGATCCCATAGTGTTACCAACACAACCAACTCAAGTCGCCAATGTCGCAACGCCAAACAGATCGTCGAACAATTTCGAATTAGTACTCGACGAACTCATGGCCATCATTTCTTCGCCACGTTTGTCAGCCGTCCAAGACGAAGTCAAATTTGAACCCTCCAACGACTCTCTGAACAGTTTATTCGATAGTATCTGCACGCCAGCCTTGGACCAACATCGTTTCATGATGTGA
- Protein Sequence
- MPERVGPLLPNTIYFQKSRNRRRTYRHHKIPMDPRNQVIYHVRQPSDEFTESSTAVTDGDKNGNSAIKDTDTVMDKNRKGRPKGSKNRPLFNSYNDQCDKRSFVYSFAGPTKCKSCKRTFDGDPVVHCHEYHKTECPICGRMYKPPLTSHIKSHGTRHVILTVDCYECYDCKEKFGNADIMAKHILDEHVQAGEYGAKVPACYICGWTTGTELDDGGLREHIATVHADTPAHLLDKHLHQQQKTVTAVVGLMCMLCGIKFGDQEAVIGHLVDTHCPRKTFNHPAVYKCRMCGAGFKSQINVLRHACNKIKSPHCAQCDKTFPSKMRYAFHLQFHDDHPKYATMHLHCDLCLAEFDDEYHLYDHIRFRHELHDKAVCETCGRTFKSSMGLNIHRRYHIGSRNFTCKSCNKSFLNKSTLREHEISHMDVKPFQCNICGQYLSRASRLRSHVKTHRAAECTEQTCYSCNTCGFVAPNLHLLAGHACKGHHDNSRDDSIIVVQLSSVVKCEFCDSTFVNAEHLNAHRDAAHANGGGNDSSEAFVCVVCSSRFSTYSRLTTHKLTHGINMKSMEQTEDDNGPDDPEQEVLADQDRFTVPQYFACQYCAKRCLHYTYFCLHRRLKHPLGDLAYKCDRCSMDFETSWKLSYHKKTVHGQSSEEKIPKKYECTLCSRKFVKIGALNLHKTRSHIDVGIDVCKYLCHHCGKFFSSECSLKNHSKTHDSHGVTDPPSVHTPKSQPTAVNHQRNRYRTYRKSTTTNNSAVSGKPTIVQNSCPYCPYSTDEKATFIDHVTRHIQSKSISFVPTITTVTPTDTTMTSTVNSTVTSTDTAMPFTVNTTISFPKPDIFRCQLCDVEFYETVQLFRVHLENHADSGETLLCRSCYVPFTSSIALDMHRHETALCGQRPDVRFVDVGNRGEDCETDDQTIIQPPLVVDCAKIFKDEPSLSPLSSSMPDTFVAPESDFVLAPKSDSVLVPKLDPIVLPTQPTQVANVATPNRSSNNFELVLDELMAIISSPRLSAVQDEVKFEPSNDSLNSLFDSICTPALDQHRFMM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -