Basic Information

Insect: Cinara cedri
Gene Symbol: -
Assembly: GCA_902439185.1
Location: CABPRJ010000046.1:149104-170304[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.3 3.4e+02 2.2 0.4 1 10 412 421 412 423 0.95

2 9 0.59 46 4.9 0.5 3 19 494 510 493 515 0.84

3 9 0.00028 0.022 15.3 3.4 1 23 601 623 601 623 0.99

4 9 8.5e-05 0.0067 17.0 0.2 1 20 679 698 679 699 0.97

5 9 3e-06 0.00024 21.5 0.8 1 23 708 730 708 730 0.99

6 9 4.9e-06 0.00038 20.9 0.6 1 23 736 759 736 759 0.96

7 9 0.0013 0.11 13.2 9.5 1 23 765 787 765 787 0.96

8 9 0.0016 0.13 12.9 0.0 1 23 793 815 793 815 0.97

9 9 0.0019 0.15 12.7 5.0 1 23 821 843 821 843 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.3	3.4e+02	2.2	0.4	1	10	412	421	412	423	0.95
2	9	0.59	46	4.9	0.5	3	19	494	510	493	515	0.84
3	9	0.00028	0.022	15.3	3.4	1	23	601	623	601	623	0.99
4	9	8.5e-05	0.0067	17.0	0.2	1	20	679	698	679	699	0.97
5	9	3e-06	0.00024	21.5	0.8	1	23	708	730	708	730	0.99
6	9	4.9e-06	0.00038	20.9	0.6	1	23	736	759	736	759	0.96
7	9	0.0013	0.11	13.2	9.5	1	23	765	787	765	787	0.96
8	9	0.0016	0.13	12.9	0.0	1	23	793	815	793	815	0.97
9	9	0.0019	0.15	12.7	5.0	1	23	821	843	821	843	0.97

Sequence Information

Coding Sequence: ATGACATCTTGTGCTGTGCAATTTTGTAATAACAAACTGTCAAAAACTGAACATATTAGTTACTTCAGGTTTCCTACTGATCCATTGAGATGTAAACAATGGATTGAAAGTTGTGAAACATTTCATTTATTTGATAAAGATCCGGCCATTTTACAAAAAAGTTATAGAGTTTGTAGTGATCACTTTGAAGAAAAAATGTTTTTAAATCCAAAGATAAGAAATCGTCTAACAATAAATGCTGTACCAACACTATTTAGTGATAAAATATTACAAGAAAGAGTTAGCTCAAAAGAAAAGGAAATTGAGATCCAAAATGAATTAGAGATCCAAGCTGCAACTGCATCGTGTTCCAGCCCTATCACTGTTCAATCACCGCCTTCATCATTCAATTACGATGTATCCACAAGCCATATTATCAATGAAGATTTTGAGAGTGCTTCCATTTCTAATGTTTCAAAAGTATCCATCAGTGATTCATCATATCAAACTCCAATTCACCTCACTAACAAATCTCCTAGAAAACTAAAATTTTTAAATGAGTTTATTGATTCATCAAAAAACAAAATTGATGAAATGACTGAAGTTATGACTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTGCAGACTATGTGCAAATATACATGACGTTATGATACCAATTTATGCTGATGAAGGGATAGATCACATGTTAGAATCCAAAATAAAGACACATCTTCCTTTTATAAATATCTGTGAAAATGATTTATTGCCAAAAAGAGTATGTTATCAATGTGCCTCTGCCATACTTGTGTGGAATGAGGTATATGAAACAAGTAGTGATGCAGATCAAAAACTAAGAAGTTTGTGTGAAGTTCCTCCATTTGAACAGGGAGAACAATGCAAGGATGTGCCGTTTGAAGAAGATACACCCATTCATATTGAAGGAATACAGGTTAAGAATTTTATTGGTGGACAGTCAATTCACTTTGAAGATATTACCGATGAACACATGTTTGATAAAAATTTAAAATCAAATAAAACATTAAATGAATTAGATAAGGATCAAAGTATTTCTAAAAGTGATGATACCATATTAAATCACGAATCCAAATCACCTGTTATTCAACAAGATGAAAGACTGAATCAACCATTAAAAAGGTACATTGACATGTCAGAACCGGGTACAACAATGAAAATTGTTACTACTAAAGAAAATTCCCTTTCAAACAATTATTCTTGTTCATTGTGTCATGAAAGATTTTTGAAAATTAGAGATAAAGTAAAACATGATCGTGATGTCCATGGTGTTTATTCTAATTTATTGCCAATCAAATATGTAAGTGATAGGTTTATAGAAAACAGTCTGAAAATTGAAAATGTTTCGGAAAACCATACAGATGAAAATCTCTCAAGCTTAGTCAATATAACTGGACCAAAAATAACCCAAGAATTCAAAAGTAATAACTGTGATATTTTATGTACTATCTGTAGTATTTCTTTTAAAACTTCATTTGAAAAATTAGAGCATGATCAGAAATTACATAGTATTCAGTTGGCTACACGAAGAAGCAAACGTGTTGCTGCAAGTAAAAGCTATGAAGAATTATTTGATGAAGAAAGTGATTTTGATGCAGAAGTGCAAAGTAATTCTTTAGATTCTGAACTATTTACTAATAATTGTGATGAATTAATTAATGATACTAATCCAAAAAGTGATGATATTGATCTGAAGAAAAAATTGGAGAAAATAAAAAAAGAACCACTCGAATCTGGAAAGAATTCTGATGATGAAACCAATTTCAAGTGTTACTATTGTAATAAACAATTTACTAATAAGTATGTGGCTTTAAAACATGTTCGAACTCATATGGTAAATGATAAAAAACCAGCTCCAAAAATTGATATTTATGACAAATATAAAGTTAAAATAGATGACAAATTATATTATAAATGTGATCAATGTAGTTATGCAGTGGAAGGTAGACGATATAAATTTGTATACCACATGCGAGTACACACTGGTGAAAAACCATATACGTGTGAAATGTGTAGCAAACAGTTCCGTACTGCAGCATTCTTAAGACGTCATATTGTATGTTTCCATGAGAAAGTACGTAGTTATCAATGTGACATTTGTGGACGTTCATTTTCTGAAAAACGCAATGTTGATGATCATCGACGTACACATACAGGAGAACGGCCATTTGTTTGTGAAACATGTGGTAAGAGTTTTGCTCAAAGGTCTTCAATGAAAATTCATTGGAAACAAATGCATGAAAGCATAAAATCACATAAATGCCAATACTGCGACAAAAGTTTCATTCGAAGATGTCATTTGGTTGCTCATTTAACACATCATACTGGTGTTCGTAATTATGTGTGTGCAGTGTGTGGTAAAGCATTTCTGCGTAGTGGAACACTAAAAGGCCATACAGCTGTACATAGTACAGAGAGACCTTTTCATTGCACTATATGTGGTGACACATTTAAACTAAAAAAGCATTTAAAACAACATGGAAGAGTGCATGGAAATCAGCGGTCATTTGAAAGTATACCGCAATCGGAACTGATTCCACACACTGGTGCCAGTGAAGTTAATAATCAAATTAATACATAA
Protein Sequence: MTSCAVQFCNNKLSKTEHISYFRFPTDPLRCKQWIESCETFHLFDKDPAILQKSYRVCSDHFEEKMFLNPKIRNRLTINAVPTLFSDKILQERVSSKEKEIEIQNELEIQAATASCSSPITVQSPPSSFNYDVSTSHIINEDFESASISNVSKVSISDSSYQTPIHLTNKSPRKLKFLNEFIDSSKNKIDEMTEVMTPXXXXXXXXXXXXXXXVCRLCANIHDVMIPIYADEGIDHMLESKIKTHLPFINICENDLLPKRVCYQCASAILVWNEVYETSSDADQKLRSLCEVPPFEQGEQCKDVPFEEDTPIHIEGIQVKNFIGGQSIHFEDITDEHMFDKNLKSNKTLNELDKDQSISKSDDTILNHESKSPVIQQDERLNQPLKRYIDMSEPGTTMKIVTTKENSLSNNYSCSLCHERFLKIRDKVKHDRDVHGVYSNLLPIKYVSDRFIENSLKIENVSENHTDENLSSLVNITGPKITQEFKSNNCDILCTICSISFKTSFEKLEHDQKLHSIQLATRRSKRVAASKSYEELFDEESDFDAEVQSNSLDSELFTNNCDELINDTNPKSDDIDLKKKLEKIKKEPLESGKNSDDETNFKCYYCNKQFTNKYVALKHVRTHMVNDKKPAPKIDIYDKYKVKIDDKLYYKCDQCSYAVEGRRYKFVYHMRVHTGEKPYTCEMCSKQFRTAAFLRRHIVCFHEKVRSYQCDICGRSFSEKRNVDDHRRTHTGERPFVCETCGKSFAQRSSMKIHWKQMHESIKSHKCQYCDKSFIRRCHLVAHLTHHTGVRNYVCAVCGKAFLRSGTLKGHTAVHSTERPFHCTICGDTFKLKKHLKQHGRVHGNQRSFESIPQSELIPHTGASEVNNQINT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00340624;
90% Identity: iTF_00340624;
80% Identity: iTF_00340624;