Basic Information

Insect: Cinara cedri
Gene Symbol: -
Assembly: GCA_902439185.1
Location: CABPRJ010001920.1:762582-767123[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00066 0.052 14.2 3.5 3 23 156 176 155 176 0.98

2 10 0.00021 0.017 15.7 4.0 1 23 182 204 182 204 0.96

3 10 3.8e-05 0.003 18.1 5.0 1 23 210 232 210 232 0.99

4 10 7.7e-06 0.0006 20.2 3.5 1 23 238 260 238 260 0.97

5 10 1.5e-05 0.0012 19.3 1.4 1 23 266 288 266 288 0.97

6 10 0.00033 0.026 15.1 0.1 1 23 294 316 294 316 0.98

7 10 0.077 6.1 7.6 0.1 3 21 323 341 322 342 0.93

8 10 0.00026 0.02 15.5 0.0 3 23 364 384 363 384 0.97

9 10 0.00015 0.012 16.2 2.3 1 20 434 453 434 455 0.94

10 10 2.5e-05 0.0019 18.7 3.5 1 23 466 488 466 488 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00066	0.052	14.2	3.5	3	23	156	176	155	176	0.98
2	10	0.00021	0.017	15.7	4.0	1	23	182	204	182	204	0.96
3	10	3.8e-05	0.003	18.1	5.0	1	23	210	232	210	232	0.99
4	10	7.7e-06	0.0006	20.2	3.5	1	23	238	260	238	260	0.97
5	10	1.5e-05	0.0012	19.3	1.4	1	23	266	288	266	288	0.97
6	10	0.00033	0.026	15.1	0.1	1	23	294	316	294	316	0.98
7	10	0.077	6.1	7.6	0.1	3	21	323	341	322	342	0.93
8	10	0.00026	0.02	15.5	0.0	3	23	364	384	363	384	0.97
9	10	0.00015	0.012	16.2	2.3	1	20	434	453	434	455	0.94
10	10	2.5e-05	0.0019	18.7	3.5	1	23	466	488	466	488	0.97

Sequence Information

Coding Sequence: ATGTTAAAAAGGTACAATGACAGTCTTCAGCCAATAAGATTGGTTACGGACCATCTAACCGAACGGCTGAATCTCGATAGTGCGTTTGTGTTACCGACAATCAATTCGAGTACAGTATCGTTTGAACCTAAACCGACCAAATTGACGAAAAAGAACCGGCCGACCACTGGACAACATATTCGGCTTGCGGCCAAAAATAATAATCAGAATGACGTGACAACGATGAGCAACAATCTCATGTTTCGAAGTATGTTTTTTATGAACGAGGAAGCTAGACATTTCTTGGCGCCGCCGATTCAGTTGACCACAACTGACGGAGAATATTTTACACGTAAGACTGGTAATCCAAATTTGAATACACATCATCAACAACAACAGCAGCAAGCAGTTGCTGCGCTTGTAAATCACGATTCTAGTTCTAGTGAAATCAAACCGTTACAACCACCCAAAGCTCGCCCTCACGGTTGTGAAGAGTGTGGCAAAACGTTTTTAATGAAACATCATTTGTCGACTCATATGAGAGGTCATACCGGTGAGCGTCCTCATATTTGTCCTGAATGCGGTAAAACCTTTGCTCTCAAACATTGTTTGAGTACTCATTTGCTATTACATAGCTCCGAAAGACCGTACAAATGTATGGAATGCAATAAAAGCTTTACTTTAAAACATCATTTGGTAAGTCATGAACGAGTACATACTAGAGATAGACCATTCGAGTGTCCAGAATGTCGTCGTAGATTCCCCCAAAAACGTCACTTAACTACTCACATAAAATTCCATTCCGGAGAACGACCGTATTCTTGTTCTGTTTGTGGTGAAACATTCTCACGTGAAGAACATTTAGTCATGCATTCGAGATTCCATGGTGGAACACAACCATTTGTTTGCCCTGATTGTGGTGCTGCATTCCTGCGTAAATTTGAATTGGTCAATCACGAACGACAACATGGCCGTATACCAGAATCGTGTCCTGCTTGTGGCAAAGAATTCTTGCAGAGACGTACTTTATTGGTCCACGTAAGAAACTGTGGCCTTAACTCATCAACACCAGTACATAGATCTCCTTATACCGCAACAGCGAGCAAAGCATGCCGTGAATGTGGTGAAACATTTGCTAGCGATGAAGGTCTAGCACTTCACATGCGATTACACATTGGCGATCATAGTTTTCTGTCTGATATCTGTAGCCTAGCTGCCACTTTGAAACAAAGTGTACAAGGCGTATCAAATGGTATTGCTAATGTACAAAATCATCACCAGTCCCAACATCAAACTGGTGTTGTTGCAAATAAAAAGTCTCATTATTGTGGAGATTGTGGTCGTGGCTTCACCCAAAAACATGGCTTGCAACAACATCACGTAAAATATCCAAATGCAACATGTAAAGACAAACCATTTTCATGTCAAAAATGTGGTAAAAGTTTTATGCAAAAAAATCATCTTGTGCTGCATGAAAGACAACATATGGATCCGCCACCATCTAGAAACCGTAACGCTACCACCACGGCTGTCCAGTCAATACAACATATACAGACTGACCAGGTTGGCTTACAACCCACTCCTTTACATACGACTATTTTGGGATTACAACCTATTAGACATATTCAAAGTTCAGGTAGTCAACCCCAACTTTTAAGACATCCAAGTGAGGCCCATTCAGGGTCTTAA
Protein Sequence: MLKRYNDSLQPIRLVTDHLTERLNLDSAFVLPTINSSTVSFEPKPTKLTKKNRPTTGQHIRLAAKNNNQNDVTTMSNNLMFRSMFFMNEEARHFLAPPIQLTTTDGEYFTRKTGNPNLNTHHQQQQQQAVAALVNHDSSSSEIKPLQPPKARPHGCEECGKTFLMKHHLSTHMRGHTGERPHICPECGKTFALKHCLSTHLLLHSSERPYKCMECNKSFTLKHHLVSHERVHTRDRPFECPECRRRFPQKRHLTTHIKFHSGERPYSCSVCGETFSREEHLVMHSRFHGGTQPFVCPDCGAAFLRKFELVNHERQHGRIPESCPACGKEFLQRRTLLVHVRNCGLNSSTPVHRSPYTATASKACRECGETFASDEGLALHMRLHIGDHSFLSDICSLAATLKQSVQGVSNGIANVQNHHQSQHQTGVVANKKSHYCGDCGRGFTQKHGLQQHHVKYPNATCKDKPFSCQKCGKSFMQKNHLVLHERQHMDPPPSRNRNATTTAVQSIQHIQTDQVGLQPTPLHTTILGLQPIRHIQSSGSQPQLLRHPSEAHSGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01305888;
90% Identity: iTF_01305888;
80% Identity: -