Basic Information

Insect: Cinara cedri
Gene Symbol: -
Assembly: GCA_902439185.1
Location: CABPRJ010001928.1:90003-102029[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0078 0.61 10.8 2.9 1 23 242 265 242 265 0.93

2 19 0.057 4.4 8.1 3.6 1 23 429 452 429 452 0.96

3 19 3.9e-05 0.0031 18.0 0.5 1 23 565 588 565 588 0.98

4 19 0.0047 0.36 11.5 3.3 1 20 709 728 709 732 0.89

5 19 0.075 5.9 7.7 5.0 3 19 736 752 734 757 0.89

6 19 0.0019 0.15 12.7 0.6 1 23 834 857 834 857 0.91

7 19 0.064 5 7.9 4.7 3 19 861 877 859 882 0.89

8 19 0.0096 0.75 10.5 0.4 1 23 965 988 965 988 0.95

9 19 2.7e-05 0.0021 18.5 3.0 2 23 991 1012 990 1012 0.96

10 19 0.00086 0.068 13.8 0.8 1 22 1101 1122 1101 1124 0.89

11 19 1.8e-06 0.00014 22.2 1.2 1 23 1126 1149 1126 1149 0.98

12 19 0.05 3.9 8.2 0.6 1 23 1304 1327 1304 1327 0.97

13 19 0.0008 0.063 13.9 4.1 2 23 1330 1352 1329 1352 0.96

14 19 0.0015 0.12 13.0 0.3 1 23 1432 1455 1432 1455 0.95

15 19 0.0014 0.11 13.1 0.3 1 20 1457 1476 1457 1476 0.97

16 19 0.25 20 6.0 0.2 2 23 1512 1534 1511 1534 0.94

17 19 0.0021 0.16 12.6 0.3 1 23 1536 1559 1536 1559 0.94

18 19 0.14 11 6.9 2.0 1 23 1572 1595 1572 1595 0.96

19 19 1.1 87 4.0 2.4 1 23 1602 1625 1602 1625 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0078	0.61	10.8	2.9	1	23	242	265	242	265	0.93
2	19	0.057	4.4	8.1	3.6	1	23	429	452	429	452	0.96
3	19	3.9e-05	0.0031	18.0	0.5	1	23	565	588	565	588	0.98
4	19	0.0047	0.36	11.5	3.3	1	20	709	728	709	732	0.89
5	19	0.075	5.9	7.7	5.0	3	19	736	752	734	757	0.89
6	19	0.0019	0.15	12.7	0.6	1	23	834	857	834	857	0.91
7	19	0.064	5	7.9	4.7	3	19	861	877	859	882	0.89
8	19	0.0096	0.75	10.5	0.4	1	23	965	988	965	988	0.95
9	19	2.7e-05	0.0021	18.5	3.0	2	23	991	1012	990	1012	0.96
10	19	0.00086	0.068	13.8	0.8	1	22	1101	1122	1101	1124	0.89
11	19	1.8e-06	0.00014	22.2	1.2	1	23	1126	1149	1126	1149	0.98
12	19	0.05	3.9	8.2	0.6	1	23	1304	1327	1304	1327	0.97
13	19	0.0008	0.063	13.9	4.1	2	23	1330	1352	1329	1352	0.96
14	19	0.0015	0.12	13.0	0.3	1	23	1432	1455	1432	1455	0.95
15	19	0.0014	0.11	13.1	0.3	1	20	1457	1476	1457	1476	0.97
16	19	0.25	20	6.0	0.2	2	23	1512	1534	1511	1534	0.94
17	19	0.0021	0.16	12.6	0.3	1	23	1536	1559	1536	1559	0.94
18	19	0.14	11	6.9	2.0	1	23	1572	1595	1572	1595	0.96
19	19	1.1	87	4.0	2.4	1	23	1602	1625	1602	1625	0.95

Sequence Information

Coding Sequence: ATGAGTTTTCCAGATAAAGATTTTATAAAAGATTTCATTATAATATACAAGAGCCATCCGGCTTTATGGAACTTCAAAAGCCCAATATCCCAAGACAAACATTTACGCGAAAAAGGCATAGCAGCTCTAATTGAATTCTCAAAAAAAAAACATACTAGAGTAGATAAAGCATTTGTAAAAAAAAAAATAAAGAATTTACGAAATTCTTTTTTAAGAGAGCGGGACAAAGTTCAAAAATCTAAATGTAAAAATTCATCTACACAAGACTTTTACGTACCACTCCTATGGTATTATGATTTAATATCATTTATAGCTGAAGACACAAATGACGGAGTTAGTTTATCAAGTACTCATGATGACTTGGGAAATAATATGGTTCAAGATAATCAGTCGGGTAATGAATCAACATCTGATTCTGTCATGCCAAATTGTAGTGACCATATTTATTCTATGTGTGTACAGAATCATAAACATAAACCAAAAGAAAAAAAATCTGTATCAATCAGCTCTGAATCAGATGACGTTTGTGTGGAATCAGAGAAAATTCAAGATTTGAACATAAAAGTTGACATTAAAAAGAAAAATGACATTACTAATTCATTGAAATATCATAAGGCGAGTGTGTCAGATACTGAGGTAAATATGTCAAAGAAAACATGCCATAAATGTGATCTCCAATTATTGAAATCTGAATATTCACTGCACATAGAAAGAATACACAGCCACAAATGTAATTTTTGTGACAAAATATTTGTCCGCATGAAAACCATGCAGAACCATAAAGATATTATGCATAAAAACGAAATGGATGTCAATACTAATCAAACTACTAATGTTCTGTCTTTTCAAACAAACCAATTTCAAATAGTTAAAAATATGTCAATTCATATTAATGAGTCCCAAACACTCAGTGGCTCTAGAAACTTGGCAGAACACATTAATGATGTTCATATCCTTCCAGTAAACAACATAGGAATGAAAAACACTGAGGGTGTGAACAAGTCACAAACCCACCTTAATAACATTCTCTTTGATGAATTAGATAAATTTATTGAAGTGCATGAACTACCGACGGATTTGGAAATGACCAGTATAGGAATACAAAATATTGGGGTTAGTCATTTGAATAAACCTCAAACCAATAGAAATAAAAGTCTTGCTGAAAAGTGTAGTCAATTTTTTAAAGTAAACAAGCCACAGACCAATATAGAAATTAATAAAGACATTATGGGCCAAACGAAAAATCTCAAGAATATTAAAAAGAATACACAGCTAACACATACATTCATATGCTTTACATGTGACCTCCAATTCATGTACCAACATGAATACAATAAGCATATAGAGAAAAAGCACAACCATATAAATAATGTACACAAACTAAAAAACAAAAATAGCAATACAGAAATTTCTGTCAATGAGCCCAATCATCATTTAAATAAAACAACAATGCTCAAACCTTACGAATCACAAATAAACTGTGATAAAACTAATATAAATAAAACAACAAGCTTGCAAGTAAATGCAAAGAACAATGTATCTAATGTCATTCCTGTTTTTAAACAAACTGGAATGAAAATAAATAGTGTCGGATCTGTAAATTGTACTTCATCAATGAACATTATGTGTGATGAATATACCAATTTTGCAACCACACTAAACACTAATAATCATTCAAATTTTAAATATTCATATACATGTAATATATGTGCCAAAAGTTTTGTAAATAGAAGAACCATGATATCACATATGCAAGTTTTGCACAAACAATCTACAAACATACCCAAGTCAATTTGCACTAATACACAGAGTCATCCATATTTCAAACCCAATGCCCAAATACAAAGCAATATCACTCTGGTCAATAAATCTACTACTGTACAGAAAAAAGTTAATGAACATGTTAAATTTGAGGATATGCAAGCTGGTAAAGACCAGATTAACTGCAGTAAAAATAAAGGTGGTTTACCAATTGTGCCAAATGATAAGCAAACACATAAAAATAACATACATGAACATGATCAACAGAATGAAAACCTAAATCTTTTGCATCACAACATACAATCACAAGATACAGTTGTTTATCCGTGCGATGAAAAGAAGCCGGTCATTAAACATACAGAACATGTGTGTGATTTATGTGACGGCCATTTTAGTAGTCAAAGTTCATTAAAACGACATTCTTTTCTTAATCACAATATTAACTGTCTTTATTGCAAAAAAAAATTTGCTCGTAATTGTGCCCTGAAGAAACACTGTGAAAGTATTCATGCTAATGATACCGCAATTTCCTGCATTCAAAAAAGGCATATTGACACATCCAGTCAACAGAATGAAATGCTACAACTTCAGCCGGGTAATATTAAAAAAGATCATTTACCTAATCAAGCAGCAATATCTCAGATTAATTGCAATAAAAATATAGGCATTTTGTCAGTTATCTCAAATAATGTTACTTATCCGTGCGATGATAAGAAACCGGTCATTAGATATACAGAACATGTGTGCGATTTATGTGACGGCCGTTTTAGTGGTCAAAGTTCATTGAAAAGACACTCTCTTCTTATTCACAATATTAATTGTCGTTATTGCGAAAAAAAATTTGCTCGTAATTGTGCCCTGAAGAAACATTGTGAAAGTATTCATCTTCATGATATCGCAAATTCCTACATTCAAAATGGGCATATTAACACATCCAGTCAACCAGATGAAATGCTACAACTTCAGCCGGGTAATATTAAAAATGATGATTCAGCTAATCAAACAGCAGTATATCAGATGAACCGCAGTAATAATAGGACATCACATCTTGTTTCTAATAATAAGCAAATGCCTAAAAATGTAACGGCTAATCCATATGATGAAAAGAAGATAGTTATAAAACAGACAGAATTTGAATGTCACATTTGTGGTGGCCAGTTTAGTGGCAATAAAGTACTCCAAAATCACTCTGCTACTGTTCACAACCTTAACTGTCCTCACTGTGAAAAAAAATTTATTCGTAAATTAACTTTGAAGAGACATATTAGCACTCATGATAATGATAACCAAAATTCCTGCATTCTAAAAGAACATGTTGGTTTACCAACAAATCAACTGGATAAAATGATAAAGTTGGATTGTGATAAAATACGCCAGATTAATTGTAGTAATAATATAGACATCTTTTCAATTGTGCCGAATGATGAGCATACACATGAAAATAATGTACAAGAACATGAAAAGTCTTACAACAATCAATTGCAAGAAACAGTACCTTATCCATATGATGAAAAGATGCACGTCAACAAACTTAAAGGGTTTATGTGTAATATTTGTGGAGGGCAGTTTAGAACCAAAAGTGAATTCAATAGCCACAAAGGAAATGACCATAAGTATAAATGTTCAGAATGTCAAAAAAAATTTATTCGTAATGTCACTTTACAGAAACATATACAGGTTATGCATATTCAGCATAATGAAAATGTCTGCGTGAAAAAAACAGGTGCTGTCGCATTAAGTCAACAAGATGAAATGCTAAAGCTTCAGTCGGATTTTATTAAAAAAGATTCACATGAACACCAAATTAACTGTAGCAAAGATAAAAGTGTTTTGCCAATCGTACAAAATGATACATATATCAATGATGTGCTGGAATATGATCAACAGAATCAAACACAAGATGTTTGGCAGGAAAACATTGTTTCTGGAGAGACTGTGGTTAATATCTCAAATGAAATGCATATTAATAAAATTGATAAATTATCTGATTTTGAGAATATTTTGCCAACCATATCCCAGACCAATTGCAGCGATATCAATAACGTACTAAAACATAGTCAATTGAAAGAAGCGAAAAATCTTAAGTTGCACAATTATCAACTGCCAGAGGAAGTTGCTGCTCAATCCAATTATAATGAACATAAAAGGTACATTTGCAGTATTTGTAATGGCCAGTATACAAATCTAAATAAATTCTACCGACATGTAGAAACTGAGCACAAAAATAAATGTTTGTTTTGTAATAAAAAATTTATTCGGAAAAATACGTTAAAAAAACATACACAGAGCATGCATGGTAACTATAAAAAAAATTCCCATATTGAAATGTTAGTTGATATTAATATGGAAAACTTGCCAGACAGAAAACAATTTAACTGCAAAGAAACCAAAAGTGTTTTGCCAACTGTGCCGAATGATGTAAACATGTATAGCAATAACTTATCAAAATTTGTTAAACCATGTAAAAACCAAAAGCTTCAGCTGTGCCAACAAGAAGTAGATGATAAGGAGCAGGTCAGCAAATATGCTCAATACTTTTGCAATATTTGTAATGTAATATTAAAAAACAAAACTCAACTCAAACAACACTTAGCAATAGATCACAAATTCAAATGTCTCCAATGTGAAAAAAAATTTGTTCGTAATATTGACTTAGAAAATCATTTATGGGCTGAGCACAAACAAAAAATTAAAATATCTCGCACTAAAATGACTAATACACACAATACTAAACAAAGTAAACCAGAGAAACTGTCAACAGAAACTCAATTAATATGTGATTTTTGTGACAGTCAGTTTAAAAATATTTATGATCTTGGTTATCATTTGTTGAAAGTGCACAATTATAAGTGCAGCTTGTGTGAAAAAAAGTTTGTCCGTATCGGAGACATTGAAAGACATAAGAATGCTGAACACAGACATTATTTCGAAAAGCAAAATCTCAATAAAAAATTCTGTTGTAAAGAATGCAATTCATGGTTTAGTACAGATGAATCGCTCCAATCGCACATCAAATATGCACACATATTAATGCCAAAGAGATTCACTTGTTATCTGTGTACCATTACACATGCCAATAATGATGAATTTTTTAAACACATGGAGTTATACCATTTAGCACCAAATAAATGA
Protein Sequence: MSFPDKDFIKDFIIIYKSHPALWNFKSPISQDKHLREKGIAALIEFSKKKHTRVDKAFVKKKIKNLRNSFLRERDKVQKSKCKNSSTQDFYVPLLWYYDLISFIAEDTNDGVSLSSTHDDLGNNMVQDNQSGNESTSDSVMPNCSDHIYSMCVQNHKHKPKEKKSVSISSESDDVCVESEKIQDLNIKVDIKKKNDITNSLKYHKASVSDTEVNMSKKTCHKCDLQLLKSEYSLHIERIHSHKCNFCDKIFVRMKTMQNHKDIMHKNEMDVNTNQTTNVLSFQTNQFQIVKNMSIHINESQTLSGSRNLAEHINDVHILPVNNIGMKNTEGVNKSQTHLNNILFDELDKFIEVHELPTDLEMTSIGIQNIGVSHLNKPQTNRNKSLAEKCSQFFKVNKPQTNIEINKDIMGQTKNLKNIKKNTQLTHTFICFTCDLQFMYQHEYNKHIEKKHNHINNVHKLKNKNSNTEISVNEPNHHLNKTTMLKPYESQINCDKTNINKTTSLQVNAKNNVSNVIPVFKQTGMKINSVGSVNCTSSMNIMCDEYTNFATTLNTNNHSNFKYSYTCNICAKSFVNRRTMISHMQVLHKQSTNIPKSICTNTQSHPYFKPNAQIQSNITLVNKSTTVQKKVNEHVKFEDMQAGKDQINCSKNKGGLPIVPNDKQTHKNNIHEHDQQNENLNLLHHNIQSQDTVVYPCDEKKPVIKHTEHVCDLCDGHFSSQSSLKRHSFLNHNINCLYCKKKFARNCALKKHCESIHANDTAISCIQKRHIDTSSQQNEMLQLQPGNIKKDHLPNQAAISQINCNKNIGILSVISNNVTYPCDDKKPVIRYTEHVCDLCDGRFSGQSSLKRHSLLIHNINCRYCEKKFARNCALKKHCESIHLHDIANSYIQNGHINTSSQPDEMLQLQPGNIKNDDSANQTAVYQMNRSNNRTSHLVSNNKQMPKNVTANPYDEKKIVIKQTEFECHICGGQFSGNKVLQNHSATVHNLNCPHCEKKFIRKLTLKRHISTHDNDNQNSCILKEHVGLPTNQLDKMIKLDCDKIRQINCSNNIDIFSIVPNDEHTHENNVQEHEKSYNNQLQETVPYPYDEKMHVNKLKGFMCNICGGQFRTKSEFNSHKGNDHKYKCSECQKKFIRNVTLQKHIQVMHIQHNENVCVKKTGAVALSQQDEMLKLQSDFIKKDSHEHQINCSKDKSVLPIVQNDTYINDVLEYDQQNQTQDVWQENIVSGETVVNISNEMHINKIDKLSDFENILPTISQTNCSDINNVLKHSQLKEAKNLKLHNYQLPEEVAAQSNYNEHKRYICSICNGQYTNLNKFYRHVETEHKNKCLFCNKKFIRKNTLKKHTQSMHGNYKKNSHIEMLVDINMENLPDRKQFNCKETKSVLPTVPNDVNMYSNNLSKFVKPCKNQKLQLCQQEVDDKEQVSKYAQYFCNICNVILKNKTQLKQHLAIDHKFKCLQCEKKFVRNIDLENHLWAEHKQKIKISRTKMTNTHNTKQSKPEKLSTETQLICDFCDSQFKNIYDLGYHLLKVHNYKCSLCEKKFVRIGDIERHKNAEHRHYFEKQNLNKKFCCKECNSWFSTDESLQSHIKYAHILMPKRFTCYLCTITHANNDEFFKHMELYHLAPNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -