Cced004629.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- -
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010001463.1:74669-84527[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.1e-06 0.0004 20.8 3.6 1 23 197 219 197 219 0.98 2 14 0.0016 0.12 13.0 3.3 1 23 225 247 225 247 0.96 3 14 0.0006 0.047 14.3 1.6 1 23 333 355 333 356 0.94 4 14 0.0015 0.12 13.0 1.0 1 23 388 410 388 410 0.98 5 14 0.03 2.3 9.0 2.3 2 23 428 449 427 449 0.91 6 14 0.0021 0.17 12.6 0.3 2 23 460 482 459 482 0.93 7 14 0.003 0.23 12.1 4.0 2 23 490 511 490 511 0.96 8 14 0.0038 0.3 11.8 3.5 3 23 518 538 517 538 0.92 9 14 0.0051 0.4 11.4 0.0 3 23 545 565 543 565 0.95 10 14 7.4e-05 0.0058 17.1 0.1 1 23 581 603 581 603 0.98 11 14 0.00016 0.013 16.1 0.2 3 23 611 631 609 631 0.97 12 14 1.7e-05 0.0013 19.2 0.1 1 23 637 659 637 660 0.95 13 14 0.00031 0.024 15.2 1.2 1 23 673 695 673 695 0.96 14 14 9.5e-05 0.0074 16.8 0.1 2 23 967 989 966 989 0.94
Sequence Information
- Coding Sequence
- ATGGAAACTGACTTGGTGGAAGAAATTGTGTCCATTCATACTGATAACCAAATACTCAATTCCAATAAAACAGACAATGTTTTATATCCTGATGGTGATTGCGTTAAGACAGAATATTACAGTTCACTTGATTTTGCTGATGCTATGTCTTCTGAAAATTGTTTAGTACAACCTATTGAGTCTTCATATTTCACTAACAATGGTTTACCTAAGAATGACCTGAACCATATGACAAGAGCAGTCATGGAATCCGTGCCATATGCTGATGGATTGCAGTATTTAGCTGCCATATCTTCATTCAGTGATAATTTTAAGACGGAGACAGAAAATCCAATGAAACAAGAACCCGAGGAATTATTTGAGGGTACTGATGAAGAATTTAAAGATTATTTTAATGTTCAAGAAGAAGTTGTAGTTCAAGAATGTCCTGAGCAAGAAATTGTCACTCAAAGTTGGAATATAGAGGAATCATCTAATATTAATAACATATTAGATGCAGAAGTTGAATGTATGTCATCATCAGTTAATGTTGACAATGTTGATATCCCAATACCTGAAGGGGAAGAAGCATCATCTACTGTTAATCCATATCCATGTGATTTTTGTAGTCGAAGATTTAATAGAAAATCACATCTCATGAATCATATGGTCACTCATCAGTCGGAACGTCCTTTTTGTTGTGCATTATGTGGTGTGCGTTATCGACGTAAATGTGATTTAGCAAATCATATGACTATACACATAGCTCCTGATGATCAAGCAGAAAATGATAGTCAAAATGCATCGGTTTCAAAAGCAATGAATAAGCTAATGTTCATGGACCCAATACAAAGGCGTAGTGTTACACCCGGTGAAGATACTGAAGATAAAGGAGATAATAAGGATCAAAATACAAAAAGCCGTGGTCGTGGAAGAGGTCGTGGTAGAGGAAGGGGGCGTCCACTGAAAGATCGTCTGATGACACTTGGTTGGAACTCCGAGTTGTTTACAAAACCACACACGTGTAACCCATGTGGAATTTCTTTTACCCGTGAAAAGGCTCTTCTTAACCATGCCCGTATTCATCATATTGATGATGGTGTAAACATTATAACTACTCAAAAATCAAATTCAGATACCTATGAGCTTACAATATTATCTAGTACTGCAAACAATGTCACTTACCCTTGTGAATCATGTGGAGATGTTTTTCAAAGATTTGATTTTTTAAAACGTCATCAAAGACAACATATGCAAAAAGAACACGGAAACGTTGAAGAAGAAACATATGAAGAGGCGCATATGTGTATACATTGTGGGTTGTTTTTTAAATCCATGTCAGATTTAGAAGTTCACACTGAACAGCATTTGGTTTCTTCCAATATTGCAGAAAAATCAAAATGTTTAATTTGTAATGAAACATTTGATAGTACTGATGAGCTGACTGACCACGTGTCTCAAATGCATAATGATTCATTATCTGAAAATTCATGTAAGTTATGTGGAAAACACTGTAGAGATGATAAAGCTCTCCAAAAACATTTATTGATTCATGGTACATCTGATAATAAATGCATAATGTGTGGTAAAAGATTCCATTCTAGGGCGCGTCTCAAAAGACATATGGTAACACACCGAGAAAAAGCAGTTATTTGTGACATATGCGGAGAAGAAGTTGCTGATAAACGATCGCTTATTAATCATAAAGCAAGTCATGCAAATACTGTTAGTGTTACACAAAATTCATTGACTGAAAAAGTATTTCCTTGTGCAAGTTGCGGCAAAGTTTTTGGATCTAGATCATCTCAACAAATACATATACGAATACATACGGGAGAACGACCGTATGGTTGTAGATATTGTGATAAAGCTTTTGCGGATGGTGGTACACTCAGAAAACACGAACGAATTCACACCGGTGAAAAACCATATGCTTGTCCAGTCTGTCCAAAAGCATTTAATCAACGAGTTGTATTACGTGAACACATCAGAGCACATCATGCTGGTAATGAGGCAAGAGGTGCAAATGTAAATTTTTACGAATGTAAAGTGTGTGGCTATTTGTTCCGATCTGCAACGGAACTTTGTTCCCATTTAGTACAACATAGTGACGAAAATACTGCAAAATCCAGAGTAGTCCCTGTTGGACCTCGAAAATACAAACGTCGTAGCAAGTTAGGCAATCGAAAAGATACTTGGTGTTTAGTAGAAAAAGTCTTTACAGTTTTGTCGAGTCAGTCAGAAACAGAGAGTTGTGAAGACGATCCAATGCCTTCAGTTGAAGAGCAAGCTGTACAGTCAATTATGAGCAGTAATGATCAGTCATATAAATGTGAACCTGTGGTTAGTCCCAGCAAATCTTCACTAGTTCAAACCTATAAAATTGTCAACGGCAAAGTGATGAAACATGAACCAAAAACACCATCTAAGGAAGTGTCTCCAGAATCAAAATGTAACTTTACTAAACCAGAGTTTAAAAAACAAAGCTTTATAGTTAAGGAAGGCCAGTGTACTAGAACATGTTCAACTGTCTCTTATTATTGTTCAAAAATGGATCCAGAAACTTTTGAATTATCATTTGGAGAGGAATCCAAAGAGAATGATAATCCAGATGAACAAGATCAGATATCTGTAGTGGATACGGATTTATCAAATATTAAAACTGAGAATGATAATGATGAGTTTGAAGAACAAGACTATGAAAACATACGTAACGTTGAATATACAGATCAAGACGAAGTGGAATATTACATACCAGACAATGATGAATTTGATTCACGAGGAGACACTATGGAAACTGTGAATGATGATTGTTTGATTGAGACTGAACTGGTGTTTGATTCAGATTATGTTGAAGAAGTTGGTGCCAACATTGAGTTAAGTACAGAAGAAATGGTACCTGTATACCTAGAAACTATTTCTTGTGATATTTGTGATGAAATATTTGAGGATAGAAAAGAACTTATGAAACATATTCAAGCTATGCACATCGGGTAA
- Protein Sequence
- METDLVEEIVSIHTDNQILNSNKTDNVLYPDGDCVKTEYYSSLDFADAMSSENCLVQPIESSYFTNNGLPKNDLNHMTRAVMESVPYADGLQYLAAISSFSDNFKTETENPMKQEPEELFEGTDEEFKDYFNVQEEVVVQECPEQEIVTQSWNIEESSNINNILDAEVECMSSSVNVDNVDIPIPEGEEASSTVNPYPCDFCSRRFNRKSHLMNHMVTHQSERPFCCALCGVRYRRKCDLANHMTIHIAPDDQAENDSQNASVSKAMNKLMFMDPIQRRSVTPGEDTEDKGDNKDQNTKSRGRGRGRGRGRGRPLKDRLMTLGWNSELFTKPHTCNPCGISFTREKALLNHARIHHIDDGVNIITTQKSNSDTYELTILSSTANNVTYPCESCGDVFQRFDFLKRHQRQHMQKEHGNVEEETYEEAHMCIHCGLFFKSMSDLEVHTEQHLVSSNIAEKSKCLICNETFDSTDELTDHVSQMHNDSLSENSCKLCGKHCRDDKALQKHLLIHGTSDNKCIMCGKRFHSRARLKRHMVTHREKAVICDICGEEVADKRSLINHKASHANTVSVTQNSLTEKVFPCASCGKVFGSRSSQQIHIRIHTGERPYGCRYCDKAFADGGTLRKHERIHTGEKPYACPVCPKAFNQRVVLREHIRAHHAGNEARGANVNFYECKVCGYLFRSATELCSHLVQHSDENTAKSRVVPVGPRKYKRRSKLGNRKDTWCLVEKVFTVLSSQSETESCEDDPMPSVEEQAVQSIMSSNDQSYKCEPVVSPSKSSLVQTYKIVNGKVMKHEPKTPSKEVSPESKCNFTKPEFKKQSFIVKEGQCTRTCSTVSYYCSKMDPETFELSFGEESKENDNPDEQDQISVVDTDLSNIKTENDNDEFEEQDYENIRNVEYTDQDEVEYYIPDNDEFDSRGDTMETVNDDCLIETELVFDSDYVEEVGANIELSTEEMVPVYLETISCDICDEIFEDRKELMKHIQAMHIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -