Cced005608.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- -
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010000032.1:148545-155418[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0013 0.11 13.2 3.7 1 23 77 99 77 99 0.96 2 20 4.7e-05 0.0037 17.8 5.4 1 23 181 204 181 204 0.98 3 20 0.019 1.5 9.6 0.2 1 23 249 272 249 272 0.97 4 20 3.3 2.6e+02 2.5 2.3 1 19 288 306 288 309 0.82 5 20 0.0038 0.3 11.8 0.0 1 21 333 353 333 354 0.95 6 20 0.19 15 6.4 2.3 1 20 359 378 359 380 0.93 7 20 0.88 69 4.3 0.4 1 23 677 700 677 700 0.82 8 20 0.0068 0.53 11.0 0.4 2 23 707 728 707 728 0.95 9 20 0.14 11 6.9 0.3 1 23 793 815 793 815 0.96 10 20 0.0028 0.22 12.2 3.9 1 23 861 883 861 883 0.97 11 20 4.2e-05 0.0033 17.9 2.2 3 23 916 936 915 936 0.98 12 20 0.0002 0.015 15.8 2.0 1 23 941 963 941 963 0.96 13 20 0.00017 0.013 16.0 0.4 1 23 1017 1039 1017 1039 0.97 14 20 0.065 5.1 7.9 2.7 1 23 1044 1066 1044 1067 0.93 15 20 0.013 1 10.1 0.7 1 20 1084 1103 1084 1105 0.95 16 20 0.00036 0.028 15.0 1.2 1 23 1121 1144 1121 1144 0.95 17 20 1.1e-05 0.00086 19.8 1.7 1 20 1178 1197 1178 1198 0.96 18 20 0.00057 0.045 14.4 2.4 2 21 1207 1226 1206 1231 0.93 19 20 0.0037 0.29 11.8 0.3 2 23 1294 1315 1294 1315 0.97 20 20 0.0035 0.28 11.9 7.0 1 23 1321 1344 1321 1344 0.96
Sequence Information
- Coding Sequence
- ATGGCAAACTCCAGAGATAATTCTGCATGTTATGGAGCTGAAGATAATAATGTATCTTCCATTGCTGAAATTACAGATAAAGTGATTAAACTTGAAGCTGACCTATTGAATGATAGTATTATTGAAATCCCAAAAACTGCTGAGAACAAAACCTTGTCCTCAGAACATCAGAATGTATCTGATAGCAATATTCATTTAAATAGTGAAGATATAAATAGTAAAGAAACATTTTGTTGTAATATCTGTAAAAAGGACTTTGCATTTGAATTTCATCTCGAAAACCACATGGCAGAACATACAGAACAAACCCATTTAATAGATACATCTCTGAATCAAACACCGTTAATGGATACTAATCTAGATCAAACACAGTTAACAGATACTACTCTAGATCAAACACAGTTAACAGATACATCTTTGGATCAAACACAGTTAACAGATACATCTTTGGATCAAACACAGTTAACAGGTACTACTCTAGATCAAACACAGTTAACAGATACATCTTTGGATCAAACACAGTCAATGGATATACCTATTTTTAAATGCAATTTTTGTGATAAATCATTTAAGTTAAATTTTAGCTTCAATCGACATATGCAAAAGTATCACCCATGTGAAAATAGTGTTAGTTTACATAATATGTATGAGTGTAATACAAAATCTGATAACAAATCTGAATATGCTTTGAGTTTAAAACTTTCCAAATTTAATGGTATTTGGAAAAGTAAAACAAATAGTACTTATAAGTGTAAGATTTGTTTTGAACAATTTGATACTGAAGCTATTTTGGTAGAACATATGAACATACAGCATAATGAAGATCAAACACAGTGTCAAGATTCTTTAAATAAAAATTCATTTAAATGTCAAAAGTGTAACGTAACATTTCTTGAACAAGAGAATTTAAATTGTCATTTACTTCATTGCACGAATAGTTCTCGTAATTTATGGAACAATTTTTTTGGTAGTGCTAAGATTAATGAAACAAAATCCTATGTTTGTACAGCTTGTGGGGTTGCTTTCAGTAATTTATTGTTATTAAAAAACCATATGTCATCAGATTGCAAGTCTCATACTTGTAGTTGTTGCGAAAAAACATTTATTACAAAAGATTTATGGTTTAATCATATAACAGATAATAAAAAATTTGAAAAGTGTGTACAATTTTATGCAGTTAATAACAAAACGCCTGACAAAAACATAAATTTGGTTCATAATGATTGCAGACTAAAAATAAAGAAAGAAAAACTTTCAAACACTAATGTCTCAAATTGTAGTTCAGACAGTGCAGAAAGTAACAATGATTTGTTCATACAAAGTGTATCTCATAAATTAACAGTAAATGCTTGTAACACAGATAAAAATTATGAAAAAATCTCAAACACTACTACAAAAATACATTCAAATTCTACAGATGCAGAAAATCAAAGTAATTCATTTGTACATGATGTATCAGGTGTATCTAATATTTTAACTGTAAGCGATTTTAGCAGAAATATGAAAAGTGATAATATCTTGCCCATAACTGTTACAAGCAGAAATATTTCAATTTGTACGAACACAGAAAACAGTGATTCATCTGCACAAAATTTAGATGTGAACAATTATTCTGTTTTAAATATAAAGAAAGAAAAAAATGTATGTGCCACTTTAACGAAACAAACTATTTCAGTTTGTATGGACACAGAAAACAGCAGTGATTCAAGTTCACACAATTTATCTGAGAATTCAGGAGTGAACGATTTTTCTGATTTAATTATAAAGAACGAACATAATATATGCCCTTCTTTATTACCTCCAGGAACTAGTAATGATTTTTTGGTAGACGCAGAACATGTTCATAATTCAACGCATATGACTCACTCATGTAATATAATAGTGAAAAGAGAACCAGAGTATTTAAGTGGTGGTATTATTGAAAAAACTACTAAATATTTTTCAGTTAAACAATTGCCAAATAAACATTTTTCTCCTATAGCCAATGATGTTAATCGTAGACAAAGATCACAGACTAATATTTATTTATTTATCTGTAATGTATGTGAAATGTCAACATCTACAGATAGAGACACATTTGCAATGCACATGTCAACTCACAGTGAATGCGGTACCCGTGAATGTGTTGTATGCAATCAAGTATTTAGTTCCGTAAACCAATGGAAAAATCATATGACCTTTCATCAAAAACTCATCAATTTGCGTATGTCAAAATTATTACAACGTAGGACAGAATCTAGAAAAAGAATGCACTCTAATAATTCAGACACATCAATGGAGCCTCAAGAACTTTTAAGAAAAAGAAAAAGTCAGTTTCAAAATTCATCTATGAATTTAGTAATAAAAAAAAAGAACAATAAAAAAATTAAACGCATGTATACCTGTAATATTTGTTTTAAAATGATGCCTTCCGAGCTCACTTTAATGGCTCATCAAACACTCCATTCTGAATCACTTAATACTGGACCACTTCATTCTGAACCTCTTCATACTGAACCTGTTCATAGTGAACCTGTTCATAGTGAACCTCTTCATACTGAACCTCTTCATACTGAACCACTAAATACTAAACCATTGCAATTTTCTTGTAAATTCTGTGGTCGGACATTTACAACTAAGGGGGCATGTACAAACCACGAAAAAATACATAACCACTTAGGTAAACCACACCATAGCACAGTTGAAAAACCTAAACCAATATCAGATGACTTGATTGTTGAAAGCACTGAAGATAATATTGCATTTTGCAACTTATGCAATAAACAATTTGGACATAAAGGTGCACTAACCAATCATATGAGAATTCATTACAATTGCAAGTACAAATGTAATGTATGCGGTAAAAAATTCCGTACAAAAGAAATTTTAATGCAACATAATAAAAATCATTTAAGCAACGTTTTGGGTAATACTAATATTGAGAACAACGATCAAATACAAAATAATGAGGAACACCAAAATCAAAATGATGATTGTGCTCAATTTACTAAAAATTCATTAAAAAAGAAATTAAATAGTAAAATATTATTAAAGAAAACCAATATGAGGTTTGTTTGTGATGTGTGTGAGAAGAAATTCTCTAATGCAGCTCGACTAATAGTTCATAGAAAGTTCCACGGAAATAAACCATATTTGTGTAAAATTTGTGGTAGATTATATGCTTACAAATTTCGTTGGAATACACATTTAAAAAGCCATCATTTAAAGAGGAAAAATATTAAGAATCCAAAAAGTAACCATCAGAATCAATTTAAATGTGGAAATTGTAAAAGAGAATATAACATAAAATCCCAATGGAAAAGACATTTATCACTGAGTAAAGAATGTCGTAATTATGATTATAACAAATCAATGGAACGATTTGAATGTAATATTTGTCAGAAATCGTACAGTACCTTTTATAATCGAAAAGTTCATTTAATAAATGTTCACAAACAAATAAATCCTCAAACTCATAAGAATCATAATGATAATGATAATGATAATGCAGACATTGAAAATAAAACTATTAAAGGAAAACCAAAAAAGTTATTCCAATGTAAGTTGTGTGGTAAAAGTTACTACAATTCTGCAAATTTAAGGCGTCATCATGAATGTATACATTTAAATTCAAATATATATTGCAATATTTGTAAAAAAGTTTATAAACACAAATATTCTTATCAATTGCATTTAAGACAATCTAAAGAACACAAAGCACTCGAAAAAGCAAAACATCCAAAACAGCATATTGTATCAAACAACGGAAAGATAACTTCACAAAATGTTGAGAAGGATATAGTTCAAAGTACATCAAACAAATACAATGTAACTACCAAGCATCCTGAAAATGTTACTCAAAGTACTTCAAAATCGAATAATAGTAATGATTTGCCAGCCGAGTGTACAATTTGTTTCAAAATCCTAAAATCTCAATCATACTTACCTGCCCACATGAGACTGCACTCGGGTGTTAGACCATTTAAATGTATTTACTGTAATACATGTTTTAGATTCAAATCAAATTTAAGAATGCATTATAAAAAATTACATCCTAATAAAGAAATATTTATAAATTAA
- Protein Sequence
- MANSRDNSACYGAEDNNVSSIAEITDKVIKLEADLLNDSIIEIPKTAENKTLSSEHQNVSDSNIHLNSEDINSKETFCCNICKKDFAFEFHLENHMAEHTEQTHLIDTSLNQTPLMDTNLDQTQLTDTTLDQTQLTDTSLDQTQLTDTSLDQTQLTGTTLDQTQLTDTSLDQTQSMDIPIFKCNFCDKSFKLNFSFNRHMQKYHPCENSVSLHNMYECNTKSDNKSEYALSLKLSKFNGIWKSKTNSTYKCKICFEQFDTEAILVEHMNIQHNEDQTQCQDSLNKNSFKCQKCNVTFLEQENLNCHLLHCTNSSRNLWNNFFGSAKINETKSYVCTACGVAFSNLLLLKNHMSSDCKSHTCSCCEKTFITKDLWFNHITDNKKFEKCVQFYAVNNKTPDKNINLVHNDCRLKIKKEKLSNTNVSNCSSDSAESNNDLFIQSVSHKLTVNACNTDKNYEKISNTTTKIHSNSTDAENQSNSFVHDVSGVSNILTVSDFSRNMKSDNILPITVTSRNISICTNTENSDSSAQNLDVNNYSVLNIKKEKNVCATLTKQTISVCMDTENSSDSSSHNLSENSGVNDFSDLIIKNEHNICPSLLPPGTSNDFLVDAEHVHNSTHMTHSCNIIVKREPEYLSGGIIEKTTKYFSVKQLPNKHFSPIANDVNRRQRSQTNIYLFICNVCEMSTSTDRDTFAMHMSTHSECGTRECVVCNQVFSSVNQWKNHMTFHQKLINLRMSKLLQRRTESRKRMHSNNSDTSMEPQELLRKRKSQFQNSSMNLVIKKKNNKKIKRMYTCNICFKMMPSELTLMAHQTLHSESLNTGPLHSEPLHTEPVHSEPVHSEPLHTEPLHTEPLNTKPLQFSCKFCGRTFTTKGACTNHEKIHNHLGKPHHSTVEKPKPISDDLIVESTEDNIAFCNLCNKQFGHKGALTNHMRIHYNCKYKCNVCGKKFRTKEILMQHNKNHLSNVLGNTNIENNDQIQNNEEHQNQNDDCAQFTKNSLKKKLNSKILLKKTNMRFVCDVCEKKFSNAARLIVHRKFHGNKPYLCKICGRLYAYKFRWNTHLKSHHLKRKNIKNPKSNHQNQFKCGNCKREYNIKSQWKRHLSLSKECRNYDYNKSMERFECNICQKSYSTFYNRKVHLINVHKQINPQTHKNHNDNDNDNADIENKTIKGKPKKLFQCKLCGKSYYNSANLRRHHECIHLNSNIYCNICKKVYKHKYSYQLHLRQSKEHKALEKAKHPKQHIVSNNGKITSQNVEKDIVQSTSNKYNVTTKHPENVTQSTSKSNNSNDLPAECTICFKILKSQSYLPAHMRLHSGVRPFKCIYCNTCFRFKSNLRMHYKKLHPNKEIFIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -