Cced014227.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cinara cedri
Gene Symbol
-
Assembly
GCA_902439185.1
Location
CABPRJ010001949.1:45571-50840[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.48 38 5.1 0.4 1 17 50 66 50 67 0.91
2 15 0.071 5.6 7.8 2.7 1 23 85 107 85 107 0.97
3 15 0.18 14 6.5 1.9 3 23 119 140 118 140 0.90
4 15 2.2e-07 1.7e-05 25.1 0.9 1 23 145 167 145 167 0.99
5 15 1.1e-05 0.00082 19.8 1.5 1 21 173 193 173 194 0.97
6 15 0.00047 0.037 14.6 0.5 1 23 201 223 201 223 0.98
7 15 8.9e-06 0.00069 20.0 3.4 1 23 244 266 244 266 0.99
8 15 0.069 5.4 7.8 5.5 1 23 272 294 272 294 0.93
9 15 4.9e-06 0.00038 20.9 7.2 1 23 300 322 300 322 0.99
10 15 0.0099 0.78 10.5 0.8 1 23 328 350 328 350 0.90
11 15 9.7e-07 7.6e-05 23.1 0.8 1 23 356 378 356 378 0.99
12 15 3.8e-06 0.0003 21.2 4.5 1 23 384 406 384 406 0.97
13 15 0.0024 0.19 12.4 3.0 1 23 412 434 412 434 0.99
14 15 7.3e-05 0.0058 17.2 2.3 1 23 438 461 438 461 0.98
15 15 0.0021 0.17 12.6 1.4 1 23 467 490 467 490 0.96

Sequence Information

Coding Sequence
ATGGAAGTACTTGGTGATGAAATTGAATTGCTCACATCTTTTGAAGAAAGGATATTAGCCAAGGAAAATATAGAGCTCATAATAGCAGATGATAATGATGTCCAACAGGAGTTCCTAGACAATAATTCTATGGTTTTTCGTAACATATATAAGTGCCTTCGTTGTGAACTTACATTTGAAAATGAAAACCAATTGCATAATTGTGTGCCATTACCTTTGAATGTGAACAAACAAAAGAAACTGAAACGAGTATTCAAGTGTACACTATGTGATAAACATTATCTGTTTCCCTCGCTAGCTACACTACATCTAAAACGCCATGAGAAATATATGCATAGTAAATTAGTAAATAATTGCTATATTTGCAATTCCAAATTTCAGACTGCAAAAGAACTAAAAGACCATTTTGAACATGTACACAATATTATTCAATATCAATGTAATATTTGTGACAAGCTATTCAAACAACCCAGGAATTTACAATATCATATTATGAGTCATTCTGGATACAAACCATATAAATGTGAATTGTGTGGACATAAGTTTACTAGAGGTGATCATTTAGCTAGACACCAGAGAGACAACTGTGACCAAATGGAATTTGAATGTGATTTATGTGAAAAAATATATAATACCAAAAGAGGTATAAGAACACATTTAAAAGTGCATTACGATAGTCCAAAACCAGGTACCATATTGGCGTTGTATACAGAATCCGGAGAAAAATATTATGAATGCACATTGTGTAGTAAAACATTTACTCAATTTTCTAGATTTAAAGAACACATACGAACACATACTGGCGAGAAACCTTTTGAATGTCAAATATGTAACAAAAAATTTACTTGCCATTATAAACTTAAAATGCATGGTGATGTGCATAAAGAAGAAAGACCGTTTAAATGCAGTTATTGTGACCTACATTTCAAGAATAAAAGATACCTTAGCAAGCACATGCGAAAACATGACAACAACAAATGGTACCAATGCCAAATCTGCAATAAAGGGTTTCAGTGGTACAACAGTCTCAAATATCACGTGGCCTCTCACAAAGGTGAAAAACCGTATGTGTGCGTTGAATGCAACAAGTCATATGCACATCTCAGTACCCTGGTAGCTCATCAACGCACTCACAGTGGTCAAAGCAATCACGTTTGCCATATTTGCAATAAAAAGTTTTCTCTATCTAGTTCATTGAAAAATCATCTTATTACTCATAGCGTTGAAAAACCATTTAAATGTCATCTATGTCCGGCTCAGGCTACTACATGTGCTTCATTAAAATCGCACTTGAATACACATGGCGGAGACTATCAATGTAGTTTTTGTGGAGGTACTTTTAACCAATTATGCAATTTAAGGTGGCATGAAAGAAAGATACACAGGAAAACTGATTTCTACGACTGCGAATTTTGTGAGATGAAATTTGGTTCAAAATTGCAATTAAAAAACCATTTAAAACTTAAACATAAAATACAGATTACAAAAAATATCACTGATCATAATCATAGTATTGTGCACCAAGTATTTTAG
Protein Sequence
MEVLGDEIELLTSFEERILAKENIELIIADDNDVQQEFLDNNSMVFRNIYKCLRCELTFENENQLHNCVPLPLNVNKQKKLKRVFKCTLCDKHYLFPSLATLHLKRHEKYMHSKLVNNCYICNSKFQTAKELKDHFEHVHNIIQYQCNICDKLFKQPRNLQYHIMSHSGYKPYKCELCGHKFTRGDHLARHQRDNCDQMEFECDLCEKIYNTKRGIRTHLKVHYDSPKPGTILALYTESGEKYYECTLCSKTFTQFSRFKEHIRTHTGEKPFECQICNKKFTCHYKLKMHGDVHKEERPFKCSYCDLHFKNKRYLSKHMRKHDNNKWYQCQICNKGFQWYNSLKYHVASHKGEKPYVCVECNKSYAHLSTLVAHQRTHSGQSNHVCHICNKKFSLSSSLKNHLITHSVEKPFKCHLCPAQATTCASLKSHLNTHGGDYQCSFCGGTFNQLCNLRWHERKIHRKTDFYDCEFCEMKFGSKLQLKNHLKLKHKIQITKNITDHNHSIVHQVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-