Cced012366.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- -
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010001485.1:165181-173800[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0091 0.71 10.6 0.5 1 23 327 349 327 349 0.96 2 12 0.0003 0.024 15.2 1.0 1 23 357 379 357 379 0.98 3 12 0.00022 0.017 15.7 1.8 1 23 386 408 386 408 0.97 4 12 1e-06 8e-05 23.0 1.3 1 23 414 436 414 436 0.98 5 12 0.0048 0.37 11.5 1.3 1 23 443 465 443 465 0.96 6 12 7e-06 0.00055 20.4 0.1 1 23 471 493 471 493 0.96 7 12 4.9e-05 0.0038 17.7 0.1 1 23 499 521 499 521 0.97 8 12 7.6e-07 6e-05 23.4 1.2 1 23 527 550 527 550 0.96 9 12 1.9e-06 0.00015 22.2 0.9 1 23 556 579 556 579 0.96 10 12 2.8e-05 0.0022 18.5 1.4 1 23 585 607 585 607 0.98 11 12 9.3e-05 0.0073 16.8 0.4 1 23 613 635 613 635 0.94 12 12 0.0046 0.36 11.5 0.1 1 21 641 661 641 665 0.92
Sequence Information
- Coding Sequence
- ATGGCAACCGATCAAGACCAAGAAAGAATTTCTACTCCAACGTCTAGTACATGTTTAATTTGTGATGGTAGTACTGGAGTTTCATCACGAAATGCAATCTCCATATTTCAGCATCGTGTAACATCCTCTGATCGTACTGTTGTTAAAGTAATTGATGGTGTACTGGGTATAGTACTTTCTTCCGAAGATGTGCATTCCATTGTTGTATGCCGTCGATGTTTCAAATCTCTAAATGAAGTAGATGAGCTTGAAGATCGGTTAGCTGATATAAAATTAGAGCTTACCTCTCAATATCAACGTACACTTAAAACTAAATCTGAAGGTGTTGATATCCAGACTATAGAAACCATTGATATTAATGATCCCCTTACTGGCGATACTCCAAAACCTGTAAAAAAAAGAGGACGTCGTCCAAAGGTTAAGGAAGAACCCATTGGTGAGCCTGTTTCCAATGAAGAAACTTTACAAAATGATATTGAATGTAAAGAACTTAAAAATCAAAATAAGTGTTCATCGGTAGAGAATTTAATAGAAATGTTGGAAAACGATAAGGACAATGATGAGGGTATACCTAATGATATCGAAGATGTTCAAAAATTGATTCGTCCTGCTGATATAAAACAGGAAGCTATACATCCAGATTTAGATCATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTAAAAATTGTGAATCCAGTAGCCCTAAAAAATCAAAAGTTACTAAAAATTCAGTAAAGAAAAAACCTCCGGAAATTCTCATACCACAAATGTTGGTTCATCATGATGGAGATGTTTATACTTGCTTATTATGTAGTGTAGAAAATAAATTTAAGGCAGACGCTAGAGGTATTGTTGTTCATGCCAAAAATATACATCAAATTAAGTTGTTTATTTGTGATATATGTGGACAAGAGTTCCTTAAAAGACCTGAGTTGATGAAGCATCTAGAACATCACGCAAATAGTGAAGATGGAAACTTTGTTTGTGATATTTGCAGTAGAGTATTTAACAATGTACGTATGTTTAGAGTACATAAGAAAATGCATATGCCTCAATCTAAAAATCATACTTGTGAAACATGTGGTCGACAATTCGCATCTCGTAATACATTAGAAGAACATAATAATACACATACGGGTGTGCGTCCATATCGTTGTGAGATTTGTGGTAAAGATTTTACATCGAAGTATACATTTAAAGCACATGAAAAGGTCCACACAGATCGTGAGCGAAATTTTACTTGTATTAATTGTGGCAAAGCTTTTCTTACTGAACAGAATCTTATTCATCATGAACGGACCCATTCTGGGCTTAAAAATTATGTGTGTCAAAAATGTGGTAAAGCTTTTGGCACTGCTCGAAATTTAGAAGTGCATTATGTTGTACACACTGGTTACAAACCATTTATTTGTCGTATGTGTGGCAAAGCGTTTGCTAGAAAAGCTGAAATTAGGGATCATGAACGTATTCACACTGGAGAAAAACCATATCAGTGTGAATTTTGTGGAGCAACATTCAGTCAAAGAAGCAACCTGCAATCTCATAAACGAGCTACCCATTACGACGATAAGCGTTATAAATGTACAGACTGTGGTAAAGGATTTAAGAGACGCCGTTTATTAGATTACCACATGAAAGCTGCTCATACGGGTGAAAGGCCATTCAAGTGTGAAGTGTGTCAAGCATCATTTATTTATCCTGAACATTTTAAGAAGCATGCACGTATTCACACTGGGGAAAAACCTTACTTGTGTGAGGTTTGTGGCAAAGCATTCAACAGCAGAGATAACAGAAATGCTCATCGTTTTGTACATAGTGATAAAAAACCTTACGAATGTTTAGTCTGTGGAGCTGGATTTATGCGTAAACCATTACTTTATAATCATATGACCCAAGCTGGTCATTTAAATGATACTATTGTAGTAAATCAGCCTCGACTGGCATCTAGTCCAGTAACTATACAAGAAATGGCAGATGATATTCAAATGCCAGGTACTGATTCCGAAATGGAATTAGCCATGGTTGTTGATGCTGATGGAAATCAAACTGCTCTACGTGACATGACTGAAGAGGAAAGAAAAATGTTTGCTGGAGAATTAAAAGAGCATATACTATTACCCAACAAACAAGAAGTTCTTGGAGATGATTTAAATTCGGTTGAGCAAATACTTGTTGATAATAAATATCAAATTCAATACACAACATCTGACCAGCATGGAGATGTTCATACTATGTTAAATATGGATCATCATGGGGATGATGCTGGCCATATGGAAACTGTTACTGTTAGTGTCGGTGGTCAAGAACACCGTCAATTAATAGTCCCAGCTACTCGTCATATTACATTAAATGAAAGTGATGCAGCTGCATTTGCCGAACATGCAACTATAAATGGTGAAAATGTGCAAATAGTACAAATACAAATACAGGATGAGGATGGTGAAGACCAAAAACATTGGTTTAACATTATTCAACCACAACAAGGATAA
- Protein Sequence
- MATDQDQERISTPTSSTCLICDGSTGVSSRNAISIFQHRVTSSDRTVVKVIDGVLGIVLSSEDVHSIVVCRRCFKSLNEVDELEDRLADIKLELTSQYQRTLKTKSEGVDIQTIETIDINDPLTGDTPKPVKKRGRRPKVKEEPIGEPVSNEETLQNDIECKELKNQNKCSSVENLIEMLENDKDNDEGIPNDIEDVQKLIRPADIKQEAIHPDLDHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKNCESSSPKKSKVTKNSVKKKPPEILIPQMLVHHDGDVYTCLLCSVENKFKADARGIVVHAKNIHQIKLFICDICGQEFLKRPELMKHLEHHANSEDGNFVCDICSRVFNNVRMFRVHKKMHMPQSKNHTCETCGRQFASRNTLEEHNNTHTGVRPYRCEICGKDFTSKYTFKAHEKVHTDRERNFTCINCGKAFLTEQNLIHHERTHSGLKNYVCQKCGKAFGTARNLEVHYVVHTGYKPFICRMCGKAFARKAEIRDHERIHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCTDCGKGFKRRRLLDYHMKAAHTGERPFKCEVCQASFIYPEHFKKHARIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYNHMTQAGHLNDTIVVNQPRLASSPVTIQEMADDIQMPGTDSEMELAMVVDADGNQTALRDMTEEERKMFAGELKEHILLPNKQEVLGDDLNSVEQILVDNKYQIQYTTSDQHGDVHTMLNMDHHGDDAGHMETVTVSVGGQEHRQLIVPATRHITLNESDAAAFAEHATINGENVQIVQIQIQDEDGEDQKHWFNIIQPQQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329191;
- 90% Identity
- -
- 80% Identity
- -