Cced018354.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- -
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010002503.1:1067-4313[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00011 0.0083 16.7 2.3 1 23 108 130 108 130 0.98 2 12 0.065 5.1 7.9 0.0 5 21 140 156 139 157 0.91 3 12 1.1e-07 8.5e-06 26.1 3.8 1 23 192 214 192 214 0.98 4 12 1.6e-05 0.0012 19.3 3.5 1 23 220 242 220 242 0.98 5 12 1.6e-06 0.00012 22.4 2.3 1 23 248 270 248 270 0.99 6 12 7.9e-08 6.2e-06 26.5 1.9 1 23 276 298 276 298 0.99 7 12 0.0094 0.74 10.5 0.2 5 18 308 321 307 321 0.92 8 12 2.4e-05 0.0019 18.7 2.1 1 23 332 354 332 354 0.99 9 12 7.2e-08 5.6e-06 26.6 4.4 1 23 360 382 360 382 0.98 10 12 6.7e-06 0.00053 20.4 3.6 1 23 388 410 388 410 0.98 11 12 6.7e-07 5.2e-05 23.6 1.0 3 23 418 438 416 438 0.97 12 12 2.8e-08 2.2e-06 27.9 3.4 1 23 444 466 444 466 0.99
Sequence Information
- Coding Sequence
- TTTTTACAGTATTCAACAACACATAAAATAGACATATTTATCATGGAAGTAAACTTTGAAAATTCTCAACAAAATTTAAAACCAATAAAAGAAGAATTTATATATGATACCACTCCATGCAATTCTTTTAACGAAAATAAATCAATGCAAATAGAATACATATCTAATCATAAACCTAAAGAAGTAAAAGAAGAAATAAATACCTACATAAAAAAAGAAATAGACATCATTGATGGTTTGGTTTATGAAAGTCATATTACTATTGAGTCAGATCCTATGGAATTAATTCTATATAAAGAATCACAATTTGAAAAAAAATGTTTTATATGTGCTAATTGTAGTAACTCATTTTCTTCAAAATCAAATTTAAAATTCCATATGAAAACTCACATGGCTAAAACACTCTACACATCTAAAGTATGTGATGAGTCATATTCTACATTATCTGTATTACAAAATCATAAAAAAGTTAACTGCCTTAAAATACCAGATCAATGTGTCATTTTCAAGAAGACTTATACTAAAAAATCCAACTTAAACAAGCGTGAAAGAATTTGTACAGGAAAAAATTTTTTTGAATGTGATGAGTGTAAGAAGAAATTTACTCAAAGATCCAACTTAATGAGGCATAAAAAAACTCATACTGGAGAAAAACCTTTTGAATGTGATGAGTGTAAAAGGAAATTTTCTGAAAAATACCATTTAACCAACCATGCAAGTACTCATACGGGAAAAAAGCCTTACAAATGTAATATTTGTTACAAGAAATTTTCTAGAAAGTATACTATAATTAATCACATAAGAATACATACGGGAGAAAAACCATATCAATGTGTTGAGTGTAAGAAGAAATTTATTCAAAGATCTAACTTAAAGAATCATCTAAGAATTCATATAGAAAAAAAAATGTATGAATCTAATATGTGTGAAAAGTCATTTACTACAAATTCCAACTTAAAGAAGCCTGAAAGTACTCTTACAAGGAAAAAGCCATATGAATGCAGTATATGTAACAAGACATTTTCTGAAAAATGTATTTTAATTAATCATATAAGAACACACACAGGAGAAAAACCTTTTGAATGTGATGAGTGTAAAAAGAAATTTTCTCAAAGATCCAACTTAAAAAGACATAAAAAAACGCATACAGGGAAAAAGCCCTATAAATGTTATGTATGTAACAAGACATTTTCTGTAAAATACCATTTAAATGATCATGAAAAAATTCATACGGGCGAAAAGCCTTATGGGTGCAATATTTGTTACAAGACATTTTCTAGAAAGTATACTTTAAACAACCATATGATAATTCATACGGGAGAAAAACCATATCAATGTAATGAGTGTAAGAAGACATTTATTCAAAGATCTAACTTAAAGAAACATAAAAGAATTCATACAGGACTAAAGCCTTAA
- Protein Sequence
- FLQYSTTHKIDIFIMEVNFENSQQNLKPIKEEFIYDTTPCNSFNENKSMQIEYISNHKPKEVKEEINTYIKKEIDIIDGLVYESHITIESDPMELILYKESQFEKKCFICANCSNSFSSKSNLKFHMKTHMAKTLYTSKVCDESYSTLSVLQNHKKVNCLKIPDQCVIFKKTYTKKSNLNKRERICTGKNFFECDECKKKFTQRSNLMRHKKTHTGEKPFECDECKRKFSEKYHLTNHASTHTGKKPYKCNICYKKFSRKYTIINHIRIHTGEKPYQCVECKKKFIQRSNLKNHLRIHIEKKMYESNMCEKSFTTNSNLKKPESTLTRKKPYECSICNKTFSEKCILINHIRTHTGEKPFECDECKKKFSQRSNLKRHKKTHTGKKPYKCYVCNKTFSVKYHLNDHEKIHTGEKPYGCNICYKTFSRKYTLNNHMIIHTGEKPYQCNECKKTFIQRSNLKKHKRIHTGLKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -