Cced004242.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cinara cedri
Gene Symbol
-
Assembly
GCA_902439185.1
Location
CABPRJ010002433.1:60280-67369[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2.7e-05 0.0021 18.5 0.4 3 23 134 154 132 154 0.97
2 14 0.00047 0.037 14.6 0.4 1 21 213 233 213 234 0.93
3 14 0.00014 0.011 16.3 0.7 1 23 246 268 246 268 0.99
4 14 0.0069 0.54 11.0 6.4 2 23 275 296 274 296 0.97
5 14 7.9e-05 0.0062 17.1 0.2 1 23 302 324 302 324 0.98
6 14 1.6e-05 0.0013 19.2 1.4 2 23 331 352 330 352 0.97
7 14 0.00074 0.058 14.0 0.2 1 23 431 453 431 453 0.99
8 14 1.5e-06 0.00012 22.5 1.1 3 23 461 481 459 481 0.97
9 14 3.9e-06 0.0003 21.2 0.3 2 23 510 531 509 531 0.97
10 14 9.6e-06 0.00075 19.9 0.5 1 20 561 580 561 582 0.95
11 14 3.5e-06 0.00028 21.3 0.7 2 23 612 633 612 633 0.98
12 14 3.6e-05 0.0028 18.2 0.2 3 23 641 661 639 661 0.97
13 14 0.00028 0.022 15.3 0.9 1 23 688 710 688 710 0.98
14 14 4.2e-06 0.00033 21.1 2.6 1 23 716 739 716 739 0.96

Sequence Information

Coding Sequence
ATGGATAATGAAAATCAAACTGTAATTTATATTCATAATTGGAATGATATATGTCGATTGTGTTTACGCAATGACCAACCGCTACAGAATATATTCCTTGAAATGAATATGTTAGAAAATATTCAAGAAATTACAAATCTTTCTTTCTCTGAGGAAGACTCTTTACCCAATTCTGTATGCAAACTATGTATTGATCAAGTTAATTCATTTGTTGAATTTCGAGTGCGTTGTAAAGCTACAGATGAATGGCTACGAAATGAAGCTACAGTTGATGCTAAGGATAGTAATGTTGAAATTGTAGAAGTAGTGGATATTTGGAATGACGGTACTTCACTGGAAAAGAAAGAAAACACTAATTTTCAATTAGCTTTAAAAAATATTAATGATAAAAATTGTTTATGTGAAGATTGTGGGGAAATATTTGAAACTTCTAAACAACTTGCGTCCCATATTGAAACACATTCTTCTGACCTTATTAAATGTAAATCCTGTAATGAGATTATAAGTGCGTTAGATAATTACAATTTAGATCATTCATTATTAAATGAACAGAGTAAACTTTGTGAAAATTGTATAAAACTAAATAATATTGATAATTTAGAAGTAAAAACTTCTTATACAGAAACCGAAGATGGTTACCTATGTGATAAATGTCAAAAAGTTTTTAAAACACTTTCTGGTATGTTATCTCATTTAAGAAATTATGAAAAAAAGTTAGAAATTGGATCCATGTCTTATCAGTGCCATTTTTGTGAAGAAGCATTTGCTACTATTCAACAAGTTTGGATACATATGAAGACTCATGCACCTGGTGAAAAAATTAAATGTCGTCATTGTGAAAAATGTTTCAAATCGTACTTAACACTTGTACGCCACGAAAATAAACATGAAGGGACTTTTAATTATGTATGTTCTTATTGTGGAAGAGCATTTGTAACACCATATGGCCGTGATAGACATGAAATGACTCATAATGCTGCTAAAAATGTGCAATGTGAAAAATGTACAATGACATTTTATACTAGAGCTGAATACAATAGACATATGAGGTACCACGATAATGAATCAGAAAATTATACTCCTGAAGTAATTGAAAATAAAGACATATTATTAGTTGAATCGGATCAGTTTGAAGAGCAGCTAATTGACGATCCAGACCCCGTTGACGATGATCAACAAATCGAAAATGAAATTGAATTATCACACTGTATTGTTCAAACAGAAGGAACTATGGAAGAAGTAATGCAAATAACTGCAGATGCAGAAATATTGGAGACAAACAGTAGTGATTATCAGTGTACCGTCTGCGGTAAAGAACTGTTGTCTGCATACACACTTGGAAATCATATGCGTTCTCATACCGGAGAACGTCCTTATGGTTGCAGTGTTTGCGAAAAGTTCTTCAAGACTAAATCCAATTTAAATGAACATTATCGAGTTCATAATCCGGAACTGCGTTGGATGAAGACATCAAGCAGGGACATCCCGTCGATAACTCGGGTGACTGTCACGTCGGAAGACATGCTGACGTGCAGCTATTGTTCTAAGGTCTTTACGTCGTTGGACGCGTTGTCTGCACACGAACGCACTCACGACGATGATGAACTACGTCAACAGCAAACGCTACTGTTGCAGACTCCGGAAGAAATGCTACAGGCCTCGGTCAACGCCGTGATGACGTTTACATGCGAACAGTGTAACAAAAACTTCACGTCCAAGTCGTTACTGTCCGCGCACATAAGCAACAACTGTTGTTCGAATGCGGCGGCGGCGGCGGCGGTAGGTGCGGTCGTCAACGCGGCCAAACGGCCGACGGCGGACCACCGGCATCGGCAATGTCCGTACTGCAACAAGCAATTCCGCTCGGCCGTCACCTTGGAGAACCACAAGCGGGTGCACACCAGAGAGAAGCCGTTTGGTTGCGACGCTTGCCCCAAAGTATTCCGGACCAAGGGGAACCTGCTGGAGCACAAGCGCGTGCATAACAACAGCCTGTGGCTGATGAAGAGCGACACCAAGTTGCCGGCCACGCACCACGACACCGGCGCCGTGGTCGAGCGGTTCCGGTGCACGTACTGCGCGAAACCGTTCCGGACGTACACGGCCATGTTGAACCACGAGCGCGTGCACACCCGCGAAAAGCCTTTCGAGTGTTCTGTGTGCGGCAAATTGTTCCGGACCAAGTCAAACATGACCGAACACATGAAGGGCTGTCACGATATCGACTCGTCGGCCTGTGGCGGCACGGACGAGGTGCAAGTGTTCACGTTCAAGAACCAGGCGGCGTTCTGCAAGTCGTAA
Protein Sequence
MDNENQTVIYIHNWNDICRLCLRNDQPLQNIFLEMNMLENIQEITNLSFSEEDSLPNSVCKLCIDQVNSFVEFRVRCKATDEWLRNEATVDAKDSNVEIVEVVDIWNDGTSLEKKENTNFQLALKNINDKNCLCEDCGEIFETSKQLASHIETHSSDLIKCKSCNEIISALDNYNLDHSLLNEQSKLCENCIKLNNIDNLEVKTSYTETEDGYLCDKCQKVFKTLSGMLSHLRNYEKKLEIGSMSYQCHFCEEAFATIQQVWIHMKTHAPGEKIKCRHCEKCFKSYLTLVRHENKHEGTFNYVCSYCGRAFVTPYGRDRHEMTHNAAKNVQCEKCTMTFYTRAEYNRHMRYHDNESENYTPEVIENKDILLVESDQFEEQLIDDPDPVDDDQQIENEIELSHCIVQTEGTMEEVMQITADAEILETNSSDYQCTVCGKELLSAYTLGNHMRSHTGERPYGCSVCEKFFKTKSNLNEHYRVHNPELRWMKTSSRDIPSITRVTVTSEDMLTCSYCSKVFTSLDALSAHERTHDDDELRQQQTLLLQTPEEMLQASVNAVMTFTCEQCNKNFTSKSLLSAHISNNCCSNAAAAAAVGAVVNAAKRPTADHRHRQCPYCNKQFRSAVTLENHKRVHTREKPFGCDACPKVFRTKGNLLEHKRVHNNSLWLMKSDTKLPATHHDTGAVVERFRCTYCAKPFRTYTAMLNHERVHTREKPFECSVCGKLFRTKSNMTEHMKGCHDIDSSACGGTDEVQVFTFKNQAAFCKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-