Cced010866.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cinara cedri
Gene Symbol
-
Assembly
GCA_902439185.1
Location
CABPRJ010002379.1:578714-584794[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0057 0.45 11.2 6.4 1 23 71 93 71 93 0.98
2 15 5.7e-05 0.0045 17.5 5.7 1 23 162 184 162 184 0.99
3 15 0.0014 0.11 13.1 2.9 1 23 248 270 248 270 0.98
4 15 0.00077 0.06 14.0 0.3 2 17 277 292 276 293 0.93
5 15 0.00084 0.066 13.8 0.2 5 23 308 326 307 326 0.94
6 15 3.2e-07 2.5e-05 24.6 3.0 1 23 332 354 332 354 0.99
7 15 0.00069 0.054 14.1 1.8 1 23 360 382 360 382 0.96
8 15 3.6e-05 0.0028 18.1 0.9 1 23 388 410 388 410 0.98
9 15 2.3e-07 1.8e-05 25.0 3.5 1 23 416 438 416 438 0.99
10 15 5.6e-06 0.00044 20.7 0.2 2 23 445 466 444 466 0.96
11 15 1.8e-06 0.00014 22.3 2.9 1 23 472 494 472 494 0.99
12 15 0.00037 0.029 15.0 1.7 1 23 500 522 500 522 0.98
13 15 5.7e-07 4.5e-05 23.8 3.6 1 23 528 550 528 550 0.99
14 15 1.1e-06 8.3e-05 23.0 2.4 1 23 556 578 556 578 0.97
15 15 1e-06 8e-05 23.0 4.4 1 23 584 606 584 606 0.99

Sequence Information

Coding Sequence
ATGGAAGTTGGTCAAAGCATCAAAAATTCTTCAAAAAGTTTACAATTTGCGCGTAACTTAGAAGAAATAAAATATCCAAATACTCAAACAATTGAAATAAAAAAAGAATATGATTTAATAGATGGTTGTGAGTTTAAAAGTGTCATTACTATTGAAAATGATCCTATGGAATTAATATTGCATCAAAAACCAAAACTTAAAAAAAAGAAATATACATGCCATAACTGTGATAACTCATTTTTTTCAAAATCAATGTTAAAATGTCACATGATAATGCACACTGGAAAAAAAGTTGACAATGAAAATCGCCCTCTACGATCTACGAGTAACTTAAAAGAACTAAAATATCCAAATCCCCCAACAATTGAAATAAAAAAAGAATATGATTTAATAGACGGTTGTGAATTTGAAAGTGTAATTACTATTGAAAATGATCCTATGGAATTAATGTTATACCAAAAACCAAAAGATATAAAATGTATATATACATGTCACAACTGTGATAACTCATTTTTTTTTAAATCACTGTTAAAACGCCATTTGAAAATGCACACTGGAAGTAAAGTTGACAATGAAAATTGCCTCCCACGATTTACGAGTTCCTCTGAAGAAGAGATTAATAAAAAACCAAATACACAAACAATTGAAATAAAAAAAGAAACTGATTTAATAAACAGTTGTAACGTTTCACAATTGTCCAATGTAAATCAACATAAGCTAATTTATAAAGAAAAAAAACTATTTAAATGTAATGTTTGTCGAATATCATGTTTTAGTTTATCTAATTTAAAGGAGCATAAGTTAATTCATATAAAAGAAATGCTTCAGAAATGTGAGGTATGTAAAAAATCATTTATTCATAAATCAAATTTGTTAGTATACCCAAGAATTCATACTGGGGAAAAACCATATAATTTTAAGGTATGTGAAGTATCATTTACTAGTTCGAGCAGTTTAAATAGACATAAGTTAATTCATACAGAAGAAAAGCCCTACAAATGTGAAGTATGTGAAAAATCATTTAGACATAAATCAACTTTGTCAGCACACACAAGGATTCATACTAGAGAGAACATTTACAAATGCAATGTTTGTAGAATATCCTTTAATAGATTGTCCAGATTATTGCAACATAAGTTTATTCATACTGGAGAAAAACCATTTAAATGTGATGTTTGTAAATTAGCATTTGCTTATATGTCTAGTTTAAACCGGCATAAAAAAATTCATATAGAAGAAAAGCCCTACAAATGTGAGGTATGTAAAAAACCATTTAGACATAAATCAAATTTATTGAATCACACAAGGATTCATACTCCCGAGACATATATTAAATGTGATGTTTGTGAAATATCATTTGCTACTTTGTCCAATTTAAAGCGGCATAAGTTAATTCATACAGGAGAAAAGCTCTTCAAATGTGATGTTTGTAAAAAATCATTTAGACATAAAGCAAATTTGTTGGGTCACACAAGAATTCATACTGGTGAAAAACCATATAAATGTGATGTTTGTCTAATATCATGTATTACTATGTCCAATTTAAAGCGGCATAAGTTAATTCATACAGAAGAAAAGCTCTACAAATGTGAGGTATGTAAAAAATCATTTAGACATAAATCAAATTTGTTGGGTCATACAAGGATTCATACTGGTGAAAAACCATTTAAATGTAATGTTTGTAATAAATCATTTACTGGTTTGTCCAATTTAAAGCGGCATAAGGTAAAACATACAGAAGAAAAGCTCTACAAATGTGAGGTATGTAAAAAATCATTTAAACATAACACTTCGTTGACTGTACATGTAAGAAAACATACTATACAGAAACTCTGA
Protein Sequence
MEVGQSIKNSSKSLQFARNLEEIKYPNTQTIEIKKEYDLIDGCEFKSVITIENDPMELILHQKPKLKKKKYTCHNCDNSFFSKSMLKCHMIMHTGKKVDNENRPLRSTSNLKELKYPNPPTIEIKKEYDLIDGCEFESVITIENDPMELMLYQKPKDIKCIYTCHNCDNSFFFKSLLKRHLKMHTGSKVDNENCLPRFTSSSEEEINKKPNTQTIEIKKETDLINSCNVSQLSNVNQHKLIYKEKKLFKCNVCRISCFSLSNLKEHKLIHIKEMLQKCEVCKKSFIHKSNLLVYPRIHTGEKPYNFKVCEVSFTSSSSLNRHKLIHTEEKPYKCEVCEKSFRHKSTLSAHTRIHTRENIYKCNVCRISFNRLSRLLQHKFIHTGEKPFKCDVCKLAFAYMSSLNRHKKIHIEEKPYKCEVCKKPFRHKSNLLNHTRIHTPETYIKCDVCEISFATLSNLKRHKLIHTGEKLFKCDVCKKSFRHKANLLGHTRIHTGEKPYKCDVCLISCITMSNLKRHKLIHTEEKLYKCEVCKKSFRHKSNLLGHTRIHTGEKPFKCNVCNKSFTGLSNLKRHKVKHTEEKLYKCEVCKKSFKHNTSLTVHVRKHTIQKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-