Basic Information

Insect: Cinara cedri
Gene Symbol: -
Assembly: GCA_902439185.1
Location: CABPRJ010001426.1:1737219-1742730[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00021 0.016 15.7 4.3 1 23 72 94 72 94 0.98

2 14 1.3e-05 0.001 19.5 1.3 1 23 155 177 155 177 0.98

3 14 2.1e-06 0.00016 22.0 1.1 1 23 183 205 183 205 0.98

4 14 7.5e-07 5.9e-05 23.4 1.7 1 23 211 233 211 233 0.99

5 14 4.1e-06 0.00032 21.1 0.7 1 23 239 261 239 261 0.98

6 14 5.3e-06 0.00041 20.8 2.1 1 23 267 289 267 289 0.98

7 14 2.6e-05 0.002 18.6 2.0 1 23 295 317 295 317 0.99

8 14 0.00013 0.01 16.4 1.2 1 23 323 345 323 345 0.98

9 14 9.2e-07 7.2e-05 23.1 2.9 1 23 351 373 351 373 0.99

10 14 5.7e-05 0.0045 17.5 1.5 1 23 379 401 379 401 0.98

11 14 2.1e-07 1.7e-05 25.2 1.9 1 23 407 429 407 429 0.98

12 14 0.0052 0.4 11.3 1.0 1 23 435 457 435 457 0.94

13 14 2e-07 1.6e-05 25.2 2.8 1 23 463 485 463 485 0.99

14 14 0.00016 0.013 16.1 0.8 1 23 491 513 491 513 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00021	0.016	15.7	4.3	1	23	72	94	72	94	0.98
2	14	1.3e-05	0.001	19.5	1.3	1	23	155	177	155	177	0.98
3	14	2.1e-06	0.00016	22.0	1.1	1	23	183	205	183	205	0.98
4	14	7.5e-07	5.9e-05	23.4	1.7	1	23	211	233	211	233	0.99
5	14	4.1e-06	0.00032	21.1	0.7	1	23	239	261	239	261	0.98
6	14	5.3e-06	0.00041	20.8	2.1	1	23	267	289	267	289	0.98
7	14	2.6e-05	0.002	18.6	2.0	1	23	295	317	295	317	0.99
8	14	0.00013	0.01	16.4	1.2	1	23	323	345	323	345	0.98
9	14	9.2e-07	7.2e-05	23.1	2.9	1	23	351	373	351	373	0.99
10	14	5.7e-05	0.0045	17.5	1.5	1	23	379	401	379	401	0.98
11	14	2.1e-07	1.7e-05	25.2	1.9	1	23	407	429	407	429	0.98
12	14	0.0052	0.4	11.3	1.0	1	23	435	457	435	457	0.94
13	14	2e-07	1.6e-05	25.2	2.8	1	23	463	485	463	485	0.99
14	14	0.00016	0.013	16.1	0.8	1	23	491	513	491	513	0.98

Sequence Information

Coding Sequence: ATGGAAAGCAGTCGACGCGTCGAGAAATCAACGAAAAATTCAAAATGTATGAGTACTTCTAAAGAAGAGATAAAACAACCGATTTCCCAAACAATTGAAATAAAAGAAGAATTTGATGTTTTAAATGATTGTGAATTTCAAAGTATTATTACAATTGAAAATGATCCCATGGAATTAATTTTATATAAGAAACCAAAACTTAGAAGAAAAAAATATACATGCTACAATTGTGATACCTCATTTTCTTCAAAATCGAAGTTAAAATGCCATATGATAGTACACACTGGAATAAACATTGACAATGAAAATTGCCCTCTACAATTTTGGAGTACCTCTGATGGAGAAATTAAAGAACCAATTATACAAACAAAAGAAATAAAAACAGAAACTGATTTGATAAGCAATTTTTTGCAATTGCCCCATGTAAATCAGCACAAGTTAATTCACACTGGAGAGAAACCATTTGAATGTAAATTATGTCAAAAATCATTTAGACTAGAATCAACTTTGGTGACACACACAAGGATTCATATTGGTGAGAAACCATTTAAATGCGATGTTTGTGAATTATCATTTACTCAGTCCTCTCAATTAAAGTCGCACAAGTTAATTCACACTGGAGAGAAACCATTCAAATGTAAAGTATGTCAAAAATCATTTGGTCTGAAATCAAATTTGAGAGTTCACACAAGAGTTCATACTGGTGAAAAGCCATTTAAATGTGATGTTTGTGAAATATCATTTACTCAGTTGTCTCAATTAAAGTCACACAAGTTAATTCACACTGGAGAGAAACCATTTGAATGTAAATTATGTCAAAAATCATTTAGACTAAAATCAACTTTGGTGACACACACAAGGATTCATACTGGTGAGAAACCATTTAAATGTAAAGTATGTCAAAAATCATTTAGACTGAAATCAATTTTGAAAGCACACACAAGGGTTCATACTGGTGAGAAACCATTTAAATGTAATGTTTGTGAATTATTATTTACTCAGTCCTATCAATTAAAGCTGCACAAGTTAATTCACACTGAAGAGAAACCATTTAAATGTAAAGTATGTCAAAAATCATTTAGACTGAAATCAACTTTTAGAGTACACATTAGGGTTCATACTGGTGAGAACCCATTTAAATGTGATATTTGTAAAATATCATTTAATTATTTGACTAGTTTAAAGCAGCACAAGTTAATTCACACTGGAGAGAAACCATTTGAATGTAAAGTATGTCAAAAATCATTTAGACTGAAATCAAATTTGAGAGTTCACACAAGAGTTCATACTGGTGAGAAGCCATTTAAATGTGATATTTGTGAATTATCATTTACTCAGTTGTCTAAATCAAAACTGCATAAGTTAATTCACACTGGAGAGAAACCATTTAAATGTAAAGTATGTCAAAAATCATTTAGATTGAAATCAAATTTGAGAGTTCACACAAGAGTTCATACTGGTGAAAAGCCATTTAAATGTGATGTTTGTGGAATATTATTTAAATATTTGACTAGTTTAAAGCAGCACAAGTTAATTCACACTGGAGAGAAACCATTTAAATATAAATTATGTTAA
Protein Sequence: MESSRRVEKSTKNSKCMSTSKEEIKQPISQTIEIKEEFDVLNDCEFQSIITIENDPMELILYKKPKLRRKKYTCYNCDTSFSSKSKLKCHMIVHTGINIDNENCPLQFWSTSDGEIKEPIIQTKEIKTETDLISNFLQLPHVNQHKLIHTGEKPFECKLCQKSFRLESTLVTHTRIHIGEKPFKCDVCELSFTQSSQLKSHKLIHTGEKPFKCKVCQKSFGLKSNLRVHTRVHTGEKPFKCDVCEISFTQLSQLKSHKLIHTGEKPFECKLCQKSFRLKSTLVTHTRIHTGEKPFKCKVCQKSFRLKSILKAHTRVHTGEKPFKCNVCELLFTQSYQLKLHKLIHTEEKPFKCKVCQKSFRLKSTFRVHIRVHTGENPFKCDICKISFNYLTSLKQHKLIHTGEKPFECKVCQKSFRLKSNLRVHTRVHTGEKPFKCDICELSFTQLSKSKLHKLIHTGEKPFKCKVCQKSFRLKSNLRVHTRVHTGEKPFKCDVCGILFKYLTSLKQHKLIHTGEKPFKYKLC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -