Cced011528.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- mecom-b
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010000480.1:1679358-1697525[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.33 3.8e+02 1.3 0.7 14 26 124 136 118 151 0.70 2 8 0.06 69 3.7 0.9 19 44 159 181 150 181 0.86 3 8 6.3e-05 0.073 13.2 0.7 15 43 182 207 179 208 0.91 4 8 0.1 1.2e+02 2.9 0.3 19 38 215 231 212 236 0.89 5 8 1.3 1.5e+03 -0.6 3.7 4 38 229 259 226 264 0.78 6 8 5e-05 0.058 13.6 0.2 17 41 699 720 691 722 0.86 7 8 0.00018 0.21 11.8 2.5 17 44 727 751 720 751 0.88 8 8 0.00069 0.79 9.9 4.7 5 40 744 776 744 778 0.92
Sequence Information
- Coding Sequence
- ATGGCCTGCGCAAGTTGTCCTAAAGCTCGTGCAGTAAGAGTCGCCGGCTACTCGGGATATTTGGACGGGACGATCGAAATTTGTAATTGGCTGAAATTTATTCGGTCCACTAACGACAGTACCCGGCAAAACGTTCGCGCTTTCTTGTTGGCAGGACAGATATTTTACGAGTTGATACATACGGTCAGAGCTTCGGAAGAACTGTTGTTGGGCAAACGGGAACCGTTGAATTTGGACGCTGCTTTCGGAGAACTAATGGCTACGTCGGAGGATCGAAGCGAAAGAGACTCGGTGGTGGCATCGCAAAACTCGTTGGGTTCCATTGACGGCGACGCGGACGTGGACGGCGACGCCGAAGAACCCGAAGAAGACGACCAGAACCGGTGCATCTTGTGCGAAAAATGTTTTCCCGACATTGAACAACTCGACGACCATTTGGTGACCGGCCATCATTACAAAGCCAGTCAATACGGTTGCGAGCTCTGTCCGCAATCGTACAGCTGGAAACCGTGTCTGATCCGGCACTTGGCGCTCGCGCACAGCCGGAAGTTTACGTGCGAGACGTGTTCGAAAGTCTTCAGCGACCCGAGCAACTTGCAAAGGCACATCCGGACCAACCACGCGGGCGCCCGGTCGCACGCGTGTTCCGAATGCGGCAAGACGTTCGCCACGTCCAGCGGACTCAAACAGCACACGCACATACATTCTAGCGTGAAACCGTTCCAGTGCGAAGTCTGTTTCAAGGCGTACACTCAGTTTTCAAACCTCTGTCGTCACAAGAGGATGCACGCCGACTGCCGCATGCAAGTCAAGTGCGACCGGTGCGATCAGTCCTTCAGCACGGGCACGTCGCTGTCCAAACACAAGCGGTTTTGCGAATCGAACTCGCTGCCGACGTCGAGCAGCACGCCGACGACGGCGCCGAACATGTCTTCGCAGCAACAGGGATCGTCGCCGTTCCCGGTGTACTCGAGATTTTCGCTGTACCCGCCGCATCCCCTGCAAGTGCACCCGTTCTATTTCCCGACGGCCAACGGGTCACTGCCGCCGCCGCCGCTGTTCCAGTCGCCGTTCGCGCATTTCGGACAGTTCCCGCCCAAACTCAGCATGGACATGCTGTCGCAGGAGTTGAACCGGTTCAAACGGGCGTGCAGCGGCGAAACGGAACACAGCAACGAGACGCCGGCCAAAAAGGTCAATTCGAACGCGCCGATGACCGCGCAAAAGACTCCGCCGTCGTCGGCTAGCTCGACTACGATACTGATGGGCTCGAGCAAAACGTCGCCGTTGGTCGGCGAAGAGGCGTCGTCCAACCAGAGACCGTCGCCGGCCCGACCGAACGTCGTCACGTATCCCGACCCGAAGGTGCAGATGATGAAACGGGAACCGCGGTCCGCGGACGAAGACTGCGGCGGTCCGTGCGACCTGTCCGTGAACGTTACGGACATCAACGCGGCCGACGAAACGGGCAGCGTGACGGACAGGCGGTCCGCGTCGCCGCCGGTCGACGTCGACAAGTCCGACCAGCCGCTAGATTTGTCCGTGACAAAAGTTGAAAAACGGCGGCGCAAGTCGCCGGCGACGGGTGGCCGGGCCCGTTCGGTAGCCCGTTCGTCCTCCGACAGCCCGGGCTGCAGAGAGCCCGTGCAGCAGGCGCAGCGGAAAGAGCCCAAGTGGCCGTCGCCCGGCACACCGCCGCCGTCATCGCCGTACTCGGTCAGCAGCCTGATCCAGGCCCATCCCAAGCCGCTCTACTTGGACTCGATGTACCCCCCCGCGCTCACCAACTTCGCGGAGAGCCAACTGCAACAGTTGCAGACGCACCATCATCAGGCCACGTTCGGGCACCAGACGACCGCCGCCGCCGCTGCCGGCCGGCCGTTCCCGTTCGGCATGCTGTCCTGCCCGTCACCGGCCATCGAACATTTTCTCCGGCAACCCATCCCCAACTACCCGAAGGCGTATCACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGGTTCTGCGGCCAAGTCCAAGGACCGGTACGCGTGCAAGTACTGCGGCAAAGTGTTCCCCCGCAGCGCCAATTTGACTCGGCACGTGCGCACGCACACGGGCGAACAGCCGTACCGGTGCGCGCACTGCGAACGGTCGTTCAGCATATCGTCCAACCTTCAGCGGCACGTGCGTAACATCCACCGGCAGGAGCGCAACTTCAAGTGCAACCTGTGCAACCGACGGTTCTCGCAGCAGACCAATCTGGACCGGCACGTCAAGAAGCACGAGGCGGACGACGGGACGGTAATCGGGACGGTGACCAGCAGCTCGGCGAGCAGCATGGACGAGAAGGAGGACGCGAGGCTGCTCGAGATCCGGAGCTTCATGCACAAGGTGAGCGAGAGCTCGATGGTCGCCGAGATGCAGAACAACAACATCGACCCGTGTCTGCCGGACGACGGTCTGTACGCGGCGCCGTTATGA
- Protein Sequence
- MACASCPKARAVRVAGYSGYLDGTIEICNWLKFIRSTNDSTRQNVRAFLLAGQIFYELIHTVRASEELLLGKREPLNLDAAFGELMATSEDRSERDSVVASQNSLGSIDGDADVDGDAEEPEEDDQNRCILCEKCFPDIEQLDDHLVTGHHYKASQYGCELCPQSYSWKPCLIRHLALAHSRKFTCETCSKVFSDPSNLQRHIRTNHAGARSHACSECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQVKCDRCDQSFSTGTSLSKHKRFCESNSLPTSSSTPTTAPNMSSQQQGSSPFPVYSRFSLYPPHPLQVHPFYFPTANGSLPPPPLFQSPFAHFGQFPPKLSMDMLSQELNRFKRACSGETEHSNETPAKKVNSNAPMTAQKTPPSSASSTTILMGSSKTSPLVGEEASSNQRPSPARPNVVTYPDPKVQMMKREPRSADEDCGGPCDLSVNVTDINAADETGSVTDRRSASPPVDVDKSDQPLDLSVTKVEKRRRKSPATGGRARSVARSSSDSPGCREPVQQAQRKEPKWPSPGTPPPSSPYSVSSLIQAHPKPLYLDSMYPPALTNFAESQLQQLQTHHHQATFGHQTTAAAAAGRPFPFGMLSCPSPAIEHFLRQPIPNYPKAYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSAAKSKDRYACKYCGKVFPRSANLTRHVRTHTGEQPYRCAHCERSFSISSNLQRHVRNIHRQERNFKCNLCNRRFSQQTNLDRHVKKHEADDGTVIGTVTSSSASSMDEKEDARLLEIRSFMHKVSESSMVAEMQNNNIDPCLPDDGLYAAPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01499820;
- 90% Identity
- iTF_00340800;
- 80% Identity
- iTF_00340800;