Cced005731.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- -
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010000495.1:333691-335620[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.046 53 4.1 0.2 18 40 95 114 92 119 0.91 2 13 0.00035 0.41 10.8 5.3 2 40 108 142 107 145 0.81 3 13 0.23 2.7e+02 1.8 3.1 4 40 138 170 137 173 0.85 4 13 0.0029 3.4 7.9 4.3 5 41 167 199 163 201 0.78 5 13 0.00028 0.32 11.2 3.0 17 40 206 226 200 228 0.83 6 13 0.0038 4.4 7.5 2.4 4 38 222 252 220 254 0.90 7 13 0.0068 7.9 6.7 1.2 17 40 262 282 256 285 0.85 8 13 0.32 3.7e+02 1.4 1.6 14 36 287 306 280 312 0.72 9 13 0.047 54 4.0 2.9 17 40 318 338 304 340 0.85 10 13 0.00083 0.96 9.6 0.9 19 40 348 366 346 369 0.91 11 13 0.0047 5.5 7.2 3.7 9 40 367 394 361 397 0.80 12 13 9.7e-05 0.11 12.6 0.7 18 41 403 423 394 428 0.85 13 13 1.4 1.6e+03 -0.7 0.6 17 27 430 440 424 444 0.83
Sequence Information
- Coding Sequence
- ATGATACAGACAATGAAACATCTTGTTGAAGAGTACTCGGCACACCATTTCCCAGGTGGTATGAAAAGTTTGCATGCATTGGAAGGGGATTCTATCCGCTGGCTGTCCGATTTGAAAAAAGAAGTATCACTTCAAAACTGTGAACAAGCAGGTGATGAAATAAATATCCAAATTAAAAAAGAAGTAGACATCATTGACGGTTATATTTTTGAAAGTCAGATAAGCATTGAAACAGATCCAATAGAATCTATTTTGTATCAAGATTTTGATGTTGAACTATACATATGTGATTTTTGTAAGAAGTCATTTCCTCAAAAATCCCAATTAAAATCTCATTTAAGAATTCATACAGTAAAAAAGCTTTATGGATGCAACATTTGTAAGAAGACATTTTCTTACAAAACCTCTTTAAAAAACCATATAAGAATTCATACTGGAGAAAATCCTTATAAATGTGGAGAGTGTAATAAGCCATGTACTCAACTAAGCAATTTAAAAGAACATATAAAGGTACATACCGGAGAAAAGCCTAACAAATGTAATATTTGTAAGAAGACATTTGCTCTTAAAATTAATTTAAGAATTCATTTAAGAACTCATACAGGAGAAAAGCCTTATGTATGTAAAATTTGTAAAAAAACATTTTCTTACAAAACTTCTTTAAAAAACCATATAAGAATTCATACTGGAGAAAAGCCGTATAAATGTGAAGAGTGTAATAAGACATTTACTCAAATAAGCAATTTAAAACAACATAAAAAGGGACATACCGGAGAGAAGCCTTATGAATGTAATATTTGTAAGAAGGCATTTACTCTTAAAAAAAATTTAGAAATTCATTTGAGAATTCATACTGGAGAAAACCCTTATAGATGTGGAGAGTGTAATAAGACATTTACTCAACTAGGCAATTTTAAACAACATAAAAGGGTACATGCTGGAAAAAAGCCTTATGAATGTTATATTTGTAAGAAGACATTTACTCTTAAAAAAAATTTAGAAATGCATTTGAGAATTCATACAGGAGTAAAGCCTTATGGTTGTACAATTTGTAAGAAGACATTTTCTTACAAAACCTCTTTAAAATACCATTTACAAATTCATAGTGGAGAAAAGCCTTATGAATGTAATATTTGTAAGAAGACATTCATACTTCAAAATAATTTAAGAGCTCATTTAAGAATTCATACAGGAGAAAAGCCTTACAATTGTAATTTGTGTGAGAAGACATTTTCTCAGTCATCCTCTTTATCGTACCATCTAGAAACTCATATAGGAGAAAAGCCTTATACATGTGGAGAGTGTAAAAAGAAATTTACTCATTTAAAAACCTACAAATATCATAAAAAACTTCATACTGAAAAAAATCCTTAA
- Protein Sequence
- MIQTMKHLVEEYSAHHFPGGMKSLHALEGDSIRWLSDLKKEVSLQNCEQAGDEINIQIKKEVDIIDGYIFESQISIETDPIESILYQDFDVELYICDFCKKSFPQKSQLKSHLRIHTVKKLYGCNICKKTFSYKTSLKNHIRIHTGENPYKCGECNKPCTQLSNLKEHIKVHTGEKPNKCNICKKTFALKINLRIHLRTHTGEKPYVCKICKKTFSYKTSLKNHIRIHTGEKPYKCEECNKTFTQISNLKQHKKGHTGEKPYECNICKKAFTLKKNLEIHLRIHTGENPYRCGECNKTFTQLGNFKQHKRVHAGKKPYECYICKKTFTLKKNLEMHLRIHTGVKPYGCTICKKTFSYKTSLKYHLQIHSGEKPYECNICKKTFILQNNLRAHLRIHTGEKPYNCNLCEKTFSQSSSLSYHLETHIGEKPYTCGECKKKFTHLKTYKYHKKLHTEKNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340763;
- 90% Identity
- iTF_00340763;
- 80% Identity
- iTF_00340763;