Cced016959.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- -
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010001030.1:11350-15321[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.058 67 3.7 0.3 18 40 133 152 121 158 0.82 2 9 0.0005 0.57 10.4 2.6 18 40 161 180 152 183 0.92 3 9 0.0047 5.4 7.2 1.6 17 40 188 208 181 211 0.82 4 9 0.027 32 4.8 0.9 17 39 216 235 208 244 0.74 5 9 1.1 1.3e+03 -0.4 1.2 11 26 238 253 231 255 0.70 6 9 0.0014 1.7 8.9 3.2 17 34 296 313 288 316 0.85 7 9 0.0031 3.6 7.8 4.3 5 34 313 341 311 345 0.84 8 9 9.3e-05 0.11 12.7 4.9 6 40 342 372 338 375 0.82 9 9 0.00031 0.35 11.0 1.3 17 41 380 401 373 402 0.83
Sequence Information
- Coding Sequence
- ATGAAAGTGGTTTATCCACTTGAAGAAGCAGAAACATATTTAAATTCATCTCTGTCTGTTAATATTAAAAAAATATTAACTGCCAACAGATTTTCAAATAAATTCATTATATCGAAAATTGATGAAAGGGATATCAAATCAACTGAAGAGTTTGTTGGAGATATATTACCAGATCTTATAAAAATAGATGAATATGTAGATCATTATGGCATATTAAAAAGAAATTTCCAAAAGATTCGATTAATATACAACTCTGAACAAGTAGGCGAAGAAATAAATATCCAAATTAAAAAAGAAGTAGACATCATTGACGGTTATGTTTTTGAGAGTCAGATAAGCATTGAAACAGATCCAATAGAATATATTTTGTATCAAGATTTAGATATTGGACTTCACAAATGTGGTTTTTGTAAGATATCATTTCCTCAAACATCCCAATTAAAATCCCATTTAAAAGTTCATACTGGAGAAAGGCCTTTTATATGCAATGTTTGTGGAAAGTCATTTACCCATAAAAGCAATTTAAAAACTCATTTAAGAATTCATACAGGTGAAAAGCCTTATAAATGTTATATCTGTCAGAAGTCATTTGTTACTAAAAACAATTTAACAACTCATTTAAGAATACATACAGGAGAAAAGCCATTTGAATGCGATTTCTGTAAAAAGACATTTTCACAGTTTTGTTCTTTATCATACCATTTAGAATCTCATACAACAGAAAGACCTCACGAATGTGTAAAGTGTAAAAAAACATTTATTCATTTAAGAGATTTTTTAAATCATACTAAAGAAAATCCTAATAAAAGTAAAACTCGTAAAATGACATTTCCTCATAGTTCCACTTTAAATATCCATAAAAGAACTCATGTGGGAGAAAAACCGTATAAATGTAATGTTTGTGAAAAGACTTTTAATCGAAAAAACTCTTTAAAATGTCACAACACAATTCATACTGAAGAAAAATTGTATAAATGTAATATTTGTGCGAAGACTTTTCCTCGAAAAGGCTCTTTAAAATGCCACAACAGAATTCATACTGGAGAAATATCATATAAATGTAATATTTGTAAGAAGTCATTTACTTATAAAAGCAATTTAACAGCTCATTTAAGAATTCATACAGGAGAAAAGCCTTATAAATGTTATATCTGTCAGAAGTCATTTGCTATTAAAAGCAATTTAACAACTCATTTAAGAACTCATACAGGATAA
- Protein Sequence
- MKVVYPLEEAETYLNSSLSVNIKKILTANRFSNKFIISKIDERDIKSTEEFVGDILPDLIKIDEYVDHYGILKRNFQKIRLIYNSEQVGEEINIQIKKEVDIIDGYVFESQISIETDPIEYILYQDLDIGLHKCGFCKISFPQTSQLKSHLKVHTGERPFICNVCGKSFTHKSNLKTHLRIHTGEKPYKCYICQKSFVTKNNLTTHLRIHTGEKPFECDFCKKTFSQFCSLSYHLESHTTERPHECVKCKKTFIHLRDFLNHTKENPNKSKTRKMTFPHSSTLNIHKRTHVGEKPYKCNVCEKTFNRKNSLKCHNTIHTEEKLYKCNICAKTFPRKGSLKCHNRIHTGEISYKCNICKKSFTYKSNLTAHLRIHTGEKPYKCYICQKSFAIKSNLTTHLRTHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340789;
- 90% Identity
- iTF_00340789;
- 80% Identity
- iTF_00340789;