Basic Information

Insect: Cinara cedri
Gene Symbol: lov
Assembly: GCA_902439185.1
Location: CABPRJ010000973.1:780686-789970[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.6e-18 4.5e-15 55.2 0.0 1 44 562 605 562 606 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.6e-18	4.5e-15	55.2	0.0	1	44	562	605	562	606	0.96

Sequence Information

Coding Sequence: ATGGACACGCCGCAGTATAGTCTCCGGTGGAACAATCACCTGGTCCACATGATGGACGCCATCGAAGTGCTATTGCAAAACGAAACTCTCGTGGACGTGACGCTGGTGTGCGAAAAGACCCAGTTCAAAGCCCACAAAGTCGTCTTGTCCGCGTGCAGTCCGTATTTTCAAAGACTGTTCTCGGAGACGCCGTGCAAACATCCCGTCATCGTACTCAAGGACCTCCCCGACTGGGAGATGAGAGCTATCATACACTTTATGTACAAAGGGGAGATTAACGTCGGCCAGGAACAGTTGCCGTTGTTGCTGCAGGCCGCCGAAACGCTACAAATCCGCGGGCTAGCCCACACGGAGCGTATACCGCTGTTCGTCGACTCGCCCACCTCGTCGTCGGCGACGCCCTCGGACATCCAACCGCCGCCGCCGCAGCCGCCTTCCTCGTCGTCGCACCACCACGGAAGTGGCGGCAGCGGTCATCACGGCGGTGGCGGCGGCGGCAGCAGCCACCACGGCGGTGGCGGCCACCATCACCATCACCATCCCGGGGGCGGCCACAGTCCCGGCGGCAAGTCCGCCGAGCTGATGAACGGCCAGAGTTCGCCGGGCAAGGGCGGCCACCATCACCACCATCACCATCACAACAGCAGGCACCGGGCCGACTCGCCGCAGAGCCCGCGCAACAAGTCGCAGCCACCGCCGTTCCCGCCGCCGCTGTCGCACCACCACCGGGACGGTTCCCTCGGCCGGCTGTCGCCGACCACCCGGATGTTCTTCCAAGCTGCCGCCGCGGCCGCGGCCGCCGCCGCTGCGGCTAACCCGTACGAACCGCCGCACATTCGTCTGCCGCAAATACCGCACTTGCCGCCCATCACGTTCGGCGACAGAAACTGTCCGTCGCCGACCCCACGTAGGAAACAGGCGAGGCCCAGACGGAGATCGGGCGAAGCGATCGGCCCGCAAGACCTGAGCAAAGCGCCGTCGCCGTTAAATTTCCACAACATGGCTGAGAATCTTTCGATGAAAAAGTCGCCGAACAACGAGAACGTCAACAACGACAACATGCCGACGAATTTGAGCTGCAACAACAAGAGGCCCGACAGGACGCCGTCGCCCTCGTCGAACAAACAAATGAAGATCGAGGCGGAAGAACCGGACATGATGGGAGACTTGGGACACAGTCAGCCGGCCGAGCCGTCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCATCCGGACTTTCCTTATTACGGTCCGGATCCCATGAGCATACCGCTAAATCCACACGATCCGCATTTCGAAAACTCGTTGTTTCCGCCCTTCGGACCGTTGTCATCGCTCTCTCTACAAGGACCTCCGCACATGTTTCCGATAGACGCCCAATTCGGTTTGTTTCCCGGTCTGGACGGCTGTAGAAACCCGCTGCTGAACGAACTGATCGAGCCGAGATTCGACCAGCCACCGCCCAGCAAAAAGAAGAAGAAAATGTTTCCGGTAGGCCGACCGAAGGGCCAACACAGCGCGCCCCGCGGCGGTCCGCCCAGGTCGTGGACGAACGCCGAACTGACCGAGGCGTTGCAGCACGTGTGGAACAAAAAAATGACCACCTCGCAGGCGTCCAGGATCTTCGGGATACCGTACAACAGCCTGTTGATGTACGTGCGCGGCAAGTACGGCAAGTCGCTGAAACTCGAGCAGCTGAAAAAAGAGTGTTTCGGCGACATCAACGGGCCGCTGGATCTGTTGCACTTCGGGTCCATATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCGCCCGAACCCGCGGACCTCATGCTCGGACCTCCCGGCTTCAACCCGCCCGCGTTCGCCGCGCCGAATTTCTTCCCGGACTTCGGGTCCACGTTCCCGATGGGCATGGACATGATGCACCTCATGCAGCAGCAGCACCAACAGTTGTCGTCGCTGTCGGCCGCCGAGAAACAACAGTACATGGGACTGCAGGACATTGGACAGCAGCAGTCGTCCGTCGTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGACTGATGAGCCCCGAAGTGGACCAGGACGACAAGGACAAGGAGGAGCAAGACTGA
Protein Sequence: MDTPQYSLRWNNHLVHMMDAIEVLLQNETLVDVTLVCEKTQFKAHKVVLSACSPYFQRLFSETPCKHPVIVLKDLPDWEMRAIIHFMYKGEINVGQEQLPLLLQAAETLQIRGLAHTERIPLFVDSPTSSSATPSDIQPPPPQPPSSSSHHHGSGGSGHHGGGGGGSSHHGGGGHHHHHHPGGGHSPGGKSAELMNGQSSPGKGGHHHHHHHHNSRHRADSPQSPRNKSQPPPFPPPLSHHHRDGSLGRLSPTTRMFFQAAAAAAAAAAAANPYEPPHIRLPQIPHLPPITFGDRNCPSPTPRRKQARPRRRSGEAIGPQDLSKAPSPLNFHNMAENLSMKKSPNNENVNNDNMPTNLSCNNKRPDRTPSPSSNKQMKIEAEEPDMMGDLGHSQPAEPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHPDFPYYGPDPMSIPLNPHDPHFENSLFPPFGPLSSLSLQGPPHMFPIDAQFGLFPGLDGCRNPLLNELIEPRFDQPPPSKKKKKMFPVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLKKECFGDINGPLDLLHFGSISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPEPADLMLGPPGFNPPAFAAPNFFPDFGSTFPMGMDMMHLMQQQHQQLSSLSAAEKQQYMGLQDIGQQQSSVVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLMSPEVDQDDKDKEEQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00340707;
90% Identity: iTF_00340707;
80% Identity: iTF_00340707;