Cced003477.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- RBM19
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010000490.1:297806-303926[+]
Transcription Factor Domain
- TF Family
- CUT
- Domain
- Homeobox|CUT
- PFAM
- PF02376
- TF Group
- Helix-turn-helix
- Description
- The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00025 1.7 8.9 0.2 20 77 54 116 50 118 0.85 2 2 4.4e-05 0.29 11.3 0.0 8 39 473 504 469 509 0.92
Sequence Information
- Coding Sequence
- ATGACTCGTTTAATAATAAAAAATTTACCTAAAGCTATAACCGAGGATAAATTAAAAGAAACGTTTAGCCATAAAGGAGTTATTACAGATGTCCAGCTAAAATACACAAAAGACGGAAAATTTCGGAATTTCGCTTTTATTGGCTTTCAAAATGAAGAAGAAGCTAAAGCAGCTCAAGAATATTTCAATAATACTTTTCTCAATTCTTCACGTATACAAGTAGAACAATGTAATCAATTAGGAGATAAAAATAAGCCAAAATCATGGAGTAAGTATGCACCTGACAGTAATGCTTATAAAAAACAACATAATACTCTTAAATCTGAAGAAGTTATTAAAGATGAACTTAAGAAAAAAAAAAAAAGTAAACTAAAACCTGAAGTAGAAGAACAACTAAAAAAGCACTTAAATGATCCTATGTTTACTGAATTTTTGGAAGTTCACGGACAAGAAAAAATTCTTAATGATATTAAAGATGAAGATGAAATTGAAGCTGAAAAGTCAGCCTCTCAAGAAAAAGCAGATGAAGAACCCACAAACAATATTGCTAATGCTGATATATCTGACTTTGAATATTTAAAAATAAAAAGTGGGAAAAAATCTGTAACTGAAGTGTCAATAAAGCCAAGAGTTAAAACAGAATATAATACAATTGTAATTCGTGGTTTACCATGCAAAGTGAAAAAAGCCATGTTAAAAGATTATTTTAAACCACTGAAACTAGATTCTATACGTATACCTCGTCAGTTTAAAGGCGTAGCTTATATTGGTTTTAAAAAAAAAAGTGATGCTGAACAATGTCTTCTTAAAAACAAAAGTTTCTTAAATGGAAAACGAATACTATTATATTCTATGAAAAATGAAAATGATATAACACTAGAAAATAATCACCATAATGAAAGGAATCCTGATTGGGAAAAACAAACTGATAGTTTGATTCACGAAGAAAGTATTGCAGAATCTGGTCGTATTTTTGTTCGAAATTTACCTTTTATAACTACAGAAGAAGAATTACAAATATTGTTTGAAAAATATGGCCCTGTTACTGAAGTTATAATTCCTGTTGATAAAATTTCCCGTCAAGTCAAAGGATACGGTTTAATTACATATCTTATGCCTGAACATGCTGTTAAAGCATATACTGAATTAGATGGTACAATATTTCACGGGCGAATGATGCATTTATTACCTGGAAAGGCTAAAGTTAATGTTGAAGATGAAACAATCAATGAAGGCAGTTCATTCAAAAAGAAAAAAATGGCAAAACTGAAATCTGAAGCTGGACTATCTCATAACTGGAATAGTCTATTTTTAGGCCAAAATGCAGTTGCTGACATTATCGCTAAGACTTATAATACTACTAAAGAAAATGTACTTACTGGTGATAGTGCTGCTGTGAGATTAGCTCTTGGTGAATCACAAATAGTTTCTGATACAAAAACTTACCTCGAAAATCATGGTGTTAAATTAGATATCTTTAATCAAACAGTTCTAAATCGAAGTAAAAATGTGATATTGGTTAAAAATTTACCAGCAAACACAACTGAACTGGAAATAAAAGATATTTTTTCAAAGTATGGCTTAGTGAATAGAGTTGTGTTACCACCAAGTGGAGTTACAGGTTTAATAGAATTTGTACAGAATTCTGAAGCGAAAACCGCATTTCGTCAACTTGCATATTCTAAATTCAAACATCTACCACTTTATTTAGAATGGGCACCAGATAAAGTTTTCTCACATGTTCCAGAAAATAAAAATGTTGAAAATGACTTAAATCTAAGCAAAACAAAACTTGAAAATGATATTGATGAACCTGAATTAGATACTACATTATTTATTAAAAACATTAATTTCAGTACTACAGAAGAAAATATTACAAAACATTTTGAATCATGTGGAAAAATTGCCAATGTTACAATTGCTCGAAGAAAAGACCCTAATCAACCAGGACAACTTTTATCAATGGGCTATGGTTTCATTCAGTTTTATCGCCAGAAATCACTTAATGATGCATTAAAATCCAAGCAATTTTCAATGTTAGATGATCATTCAATTGAACTTAAAAGATCAAACAGAACACTACAAAGTACTACAGTTGTAGATCGAAAACAGAGTAAATCATATGAAGAAAGTACAAAACTGCTTGTAAGGAATATACCATTCCAAGCTAGCTATAAAGAAGTCGTTGAATTGTTTAAAACTTTTGGAGAGTTAAAAGGACTGAGGATGCCTAAAAAAATGGTTGGGACTGGTACTCATCGAGGGTTCGCATTTGTTGAGTACAATTCTAAAACTGATGCTAAAGCAGCTATGGAGTCCTTGTGTCAGAGTACTCATTTATACGGTAGACGATTGGTATTAGAATGGGCACAGGCAGGTGAAAATCTTGATGAAATGCGTAAACGTACTTCTGACCAATACCAGTCATTAGGAGGAGTGAAAAAACACTGTAAAAGTGTTGCTGATATACCAATTGAAGAAGATGAAAATAAAAATCTTTGA
- Protein Sequence
- MTRLIIKNLPKAITEDKLKETFSHKGVITDVQLKYTKDGKFRNFAFIGFQNEEEAKAAQEYFNNTFLNSSRIQVEQCNQLGDKNKPKSWSKYAPDSNAYKKQHNTLKSEEVIKDELKKKKKSKLKPEVEEQLKKHLNDPMFTEFLEVHGQEKILNDIKDEDEIEAEKSASQEKADEEPTNNIANADISDFEYLKIKSGKKSVTEVSIKPRVKTEYNTIVIRGLPCKVKKAMLKDYFKPLKLDSIRIPRQFKGVAYIGFKKKSDAEQCLLKNKSFLNGKRILLYSMKNENDITLENNHHNERNPDWEKQTDSLIHEESIAESGRIFVRNLPFITTEEELQILFEKYGPVTEVIIPVDKISRQVKGYGLITYLMPEHAVKAYTELDGTIFHGRMMHLLPGKAKVNVEDETINEGSSFKKKKMAKLKSEAGLSHNWNSLFLGQNAVADIIAKTYNTTKENVLTGDSAAVRLALGESQIVSDTKTYLENHGVKLDIFNQTVLNRSKNVILVKNLPANTTELEIKDIFSKYGLVNRVVLPPSGVTGLIEFVQNSEAKTAFRQLAYSKFKHLPLYLEWAPDKVFSHVPENKNVENDLNLSKTKLENDIDEPELDTTLFIKNINFSTTEENITKHFESCGKIANVTIARRKDPNQPGQLLSMGYGFIQFYRQKSLNDALKSKQFSMLDDHSIELKRSNRTLQSTTVVDRKQSKSYEESTKLLVRNIPFQASYKEVVELFKTFGELKGLRMPKKMVGTGTHRGFAFVEYNSKTDAKAAMESLCQSTHLYGRRLVLEWAQAGENLDEMRKRTSDQYQSLGGVKKHCKSVADIPIEEDENKNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -