Cced015387.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- retn_1
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010001894.1:255704-257194[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-18 1.1e-14 54.7 0.0 27 89 2 62 1 62 0.94 2 2 2.5 7.1e+03 -2.4 0.4 52 79 196 224 189 225 0.58
Sequence Information
- Coding Sequence
- ATGGCCAAACGCGTTTTGGACCTATACACACTGTACAAGTTGGTCGTTCAGAGAGGCGGTATCGTGGCGGTCATAACCAAAAAACTATGGCAGGAAATCATCCGAGGACTTGGACTACCGCCGTCCATTACGAGCGCCGCATTCACGTTACGGACACAATACGTCAAGTACTTGTACGCGTACGAGTCGAGAATGAACCAGTTCAGTACGTTGGACGAGCTGAACATGGCCATAGCGGGCAACCGGCGCGAAGGACGGCGGAATAAGTCGCTAATGTATTCGGACATGCCGCCACCGCCGTCCGGACACCCGCATCCCCTACACCAAATGCACGGTGGCGGACACCCGCACTCGATGGTACAGTCCGGCGGTGGCAGCGCCGGCGGAAGCGCCCCGTCCGCACCGCCGTCTCACCACCATCAACATTACGCCAACGTGTTGGCCGCCGAGGACCGGTTCAGGCACCTGGCCGCCGCCATCATTGACAATCACCATCAGGCGGCCGCGGCCGCTGCCGCCGCCGCGGCGGCTGGCGTAGGAGTCGACCACCCCAGACTTCGGCGGCAGTCTTGCAGTCCGCCGCAACAGCAACAGCATCACCAACTTTTGCAGCAACAGCAGCACCACCAACTACAAGAGTGCAAGACAACGTCCGCAGCGTCATTGCAACAGCATCAGACGCCCCGATCGCCGGCCACCGTCGGTTTGCCACCCCCGCCGCCAATGCCGCCGTCGTCCTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAGAGAGGTGAGTGA
- Protein Sequence
- MAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESRMNQFSTLDELNMAIAGNRREGRRNKSLMYSDMPPPPSGHPHPLHQMHGGGHPHSMVQSGGGSAGGSAPSAPPSHHHQHYANVLAAEDRFRHLAAAIIDNHHQAAAAAAAAAAAGVGVDHPRLRRQSCSPPQQQQHHQLLQQQQHHQLQECKTTSAASLQQHQTPRSPATVGLPPPPPMPPSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -