Clec011886.1
Basic Information
- Insect
- Cimex lectularius
- Gene Symbol
- -
- Assembly
- GCA_000648675.3
- Location
- NW:1567096-1570120[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.3 1.5e+02 2.6 1.5 2 23 207 228 206 228 0.89 2 18 1.1 71 3.6 3.6 1 23 234 257 234 257 0.95 3 18 0.3 19 5.4 1.4 1 23 263 286 263 286 0.92 4 18 0.33 20 5.3 7.5 1 23 292 314 292 314 0.98 5 18 0.00088 0.055 13.3 0.3 1 23 374 396 374 396 0.99 6 18 0.048 3 7.9 7.5 1 23 402 424 402 424 0.92 7 18 1.3e-06 8.3e-05 22.2 2.2 1 23 430 452 430 452 0.97 8 18 6.6e-05 0.0041 16.9 1.6 1 23 457 479 457 479 0.98 9 18 1e-05 0.00065 19.4 2.2 1 23 485 507 485 507 0.97 10 18 0.028 1.7 8.6 1.0 1 23 513 535 513 535 0.95 11 18 0.0002 0.012 15.4 1.9 1 23 541 563 541 563 0.98 12 18 6.5e-07 4.1e-05 23.2 4.2 1 23 569 591 569 591 0.99 13 18 0.00059 0.036 13.9 3.8 1 23 597 619 597 619 0.98 14 18 0.043 2.7 8.0 0.5 1 23 625 647 625 647 0.94 15 18 1.1 65 3.7 1.9 2 23 652 673 651 673 0.93 16 18 0.0029 0.18 11.7 1.2 1 23 679 701 679 701 0.98 17 18 0.00062 0.038 13.8 0.8 2 23 708 729 707 729 0.95 18 18 0.0019 0.12 12.3 1.3 1 23 735 758 735 758 0.97
Sequence Information
- Coding Sequence
- ATGCCTACTTTGTGCTTCTTGACCCGCCCCACCGCCCAACTAAACCAGGACTGCTCTCCCTACCGACAGCCTCAGCCGCCACCGTCATTCATGCTTCGGCTTCTAAATTTTAGAGAGCAGACAAGCCATCCTCAagaaattgaaaagaaaatgGATTTTGAAGAAGACAAACCAGCGGACGAAGATGGTGAAAAAGCTAATGACAGCGAACAGCACGAAAAGGTCAACGGTGTtgccaaaatgaaaaatgaaaatgatggGAAAACAAATTCACATTTCAATGAGAAAGATATTCAAGAGGGGGAGAAAGCTGAAAACTTATTGAAAGAAGCTTCTTACATATCTCCAGCTTTGAAATATATTCTTGGTGGAAGTCATGATAACACAGAAGTGGCGTTGATTCCCGTCAGCAATCCGCAGAACAAAGATGGACCTAATGTTTTGTTCAGCGGTCAAGATGGAggaaatttagatttaaataagattttatcaaaaatatctaaaaatccAATTCTCGACGAGATTGAAGAATCTGATGGTGAAGGGGACCAAGGATCGGATCATGAAAGTGATTACAGTTTAAAAGACATCGAGATCGAAGACATCGCCAATTTATTGTACTGTCCAAAGTGTAGTTTTAAATGTTTGCTTGAAACGGATCTAAACGATCACTTGAAAGTGCACGATGTCGATAAAACGTACTGCTGTCCCAAGTGTAGTTTTCGGTGCCAGATGCTGAAAGTTCTCCGAGAACATATTAGGGCGGTTCACTCATCACTGACCCCTTTTAAGTGTTCATTATGCGATTTTAAGTGCAGCGAAGGTATGGCCCTGAAGGATCATGTTTTAGAGAAGCACAATATGGTGCAAAATTTTGTCTGCACCCATTGTCATTTTAGTTGTAAAACAATGCCCCAAATTTTCCAGCATCTCATGTCCCACCCTGAAACGAATAAAATGATCAGAGCTAAAAAAGATATCACACATTTGAAGAAACAAATCAATCTAATGGTAAATGGGAAAAATAGGACTGTCGATAGAAGTCCTactgaagatggagaaattaaaaagggtgaaATAGAAGAAGATAACGATATGGTGAAAAAAGACGATGATATTTATGTCTGTTCGTTTTGTGATTTTCAGGCAAATAATAGTGAACAGTTAATGGAGCATATTAACACCCACACCGGTGAAAAACCGTTTAAATGTCCTCATTGTGATTTTTGCTGTGgtgataaaaaatcattaaatgaaCATAGTGAATTTCATCTCCCTCCAGATTGTTTTAAATGTGATTTGTGTGGGGAGACTTTCAGTTCTAAAAAAGATTTGAAAGTTCACATACATCAACATGATATGAAACCTTATACGTGTGACCAATGTATGGCAGCTTGTAGCAGTGCGTCAAATTTAAAACGGCACATGATGCGACACACCGGAGAACGACCGTTTGCTTGTACTTTATGCGATTACAGATGCATTCAACCGTCCAGCCTTAAAATGCATATGAGAAGGCACACGAGGCAGGTGACGTTCTCCTGTTCGTTATGCCCGTTCCAAACATCAGACAGGGATGAGTACAGAAACCACAAAGATCTTCATAGAGGATCTAAGCGGTTTAGTTGCAACTTGTGCGATTACAGAAGTGTCACTCATGCCAGTTTGAAAATCCATATGATGAAGCACACTGGTGAGAAGCCTTTCCAGTGTGATCACTGCGATCAAAAATTCACTCAGTTAGCCAACCttaagaaacatttaaaaaggcACACTGGTGAAAAACCATTTTCCTGCCCTCATTGTGATTACCAATGTATACAAAGGTCGAGTTTGGACGGCCATTTGAGAAAGCATACAGGAGAAAGGCCTTTTGTCTGTATAGACTGCGACTATACAAGCTTGCAACTATCAACATTAAGAAAACACATGGCAAAACATGTTAAACCTTTGTCATGCACGCAGTGtgattttttgtgtttacaCTTAGCAGCGTTAAAAGAACACATGATGGTTCATTCTGAAGTAACAATGTTTTCATGCTCAGAATGCGAGTATTCATCCCTTTTGCCGTACAGTCTTAAAAAGCACATGCGAAGGCATTCGAACGAAAAGCCTCTTTACTGTACCGAATGCGATTTCATGTGTACCAACCCTGTAAGCCTCGATAGGCACATGGAAGATCACACCGAAGAGATCATGTTCTCTTGTATGGAATGCGATTTCCTGTGCAAAGATCTCAACAATTTAAACGCCCACATGGAGAAGGAACACGCATACGTTGATAGAGCGGAAGATATCGGGTATAAAGCCGAAGAAGACTTCGCTACTGAAGACGGTATCGAAAGTTTTGCTATGGAAGAAGCTGAGACCGGAATAGAAATGAAAGATCTGCTGCATGCACAATCTGGAGTTACCACTTTTTGTGTAGATATGacgtaa
- Protein Sequence
- MPTLCFLTRPTAQLNQDCSPYRQPQPPPSFMLRLLNFREQTSHPQEIEKKMDFEEDKPADEDGEKANDSEQHEKVNGVAKMKNENDGKTNSHFNEKDIQEGEKAENLLKEASYISPALKYILGGSHDNTEVALIPVSNPQNKDGPNVLFSGQDGGNLDLNKILSKISKNPILDEIEESDGEGDQGSDHESDYSLKDIEIEDIANLLYCPKCSFKCLLETDLNDHLKVHDVDKTYCCPKCSFRCQMLKVLREHIRAVHSSLTPFKCSLCDFKCSEGMALKDHVLEKHNMVQNFVCTHCHFSCKTMPQIFQHLMSHPETNKMIRAKKDITHLKKQINLMVNGKNRTVDRSPTEDGEIKKGEIEEDNDMVKKDDDIYVCSFCDFQANNSEQLMEHINTHTGEKPFKCPHCDFCCGDKKSLNEHSEFHLPPDCFKCDLCGETFSSKKDLKVHIHQHDMKPYTCDQCMAACSSASNLKRHMMRHTGERPFACTLCDYRCIQPSSLKMHMRRHTRQVTFSCSLCPFQTSDRDEYRNHKDLHRGSKRFSCNLCDYRSVTHASLKIHMMKHTGEKPFQCDHCDQKFTQLANLKKHLKRHTGEKPFSCPHCDYQCIQRSSLDGHLRKHTGERPFVCIDCDYTSLQLSTLRKHMAKHVKPLSCTQCDFLCLHLAALKEHMMVHSEVTMFSCSECEYSSLLPYSLKKHMRRHSNEKPLYCTECDFMCTNPVSLDRHMEDHTEEIMFSCMECDFLCKDLNNLNAHMEKEHAYVDRAEDIGYKAEEDFATEDGIESFAMEEAETGIEMKDLLHAQSGVTTFCVDMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -