Basic Information

Insect: Cimex lectularius
Gene Symbol: SCRT1
Assembly: GCA_000648675.3
Location: NW:991761-1000568[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.092 5.7 7.0 0.1 1 23 294 316 294 316 0.94

2 12 4.8e-05 0.003 17.3 0.9 1 23 324 346 324 346 0.99

3 12 0.0024 0.15 12.0 0.4 1 23 353 375 353 375 0.97

4 12 0.00019 0.012 15.4 2.9 1 23 381 403 381 403 0.99

5 12 0.0026 0.16 11.9 5.5 1 23 410 432 410 432 0.98

6 12 7.4e-05 0.0046 16.7 0.7 1 19 438 456 438 460 0.93

7 12 7.4e-06 0.00046 19.9 0.2 1 23 466 488 466 488 0.98

8 12 3.5e-06 0.00022 20.9 0.8 1 23 494 517 494 517 0.96

9 12 0.0002 0.012 15.4 0.3 1 23 523 546 523 546 0.95

10 12 6e-05 0.0037 17.0 3.3 1 23 552 574 552 574 0.99

11 12 6.3e-05 0.0039 17.0 0.4 1 23 580 602 580 602 0.94

12 12 0.00036 0.022 14.6 0.1 1 23 608 632 608 632 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.092	5.7	7.0	0.1	1	23	294	316	294	316	0.94
2	12	4.8e-05	0.003	17.3	0.9	1	23	324	346	324	346	0.99
3	12	0.0024	0.15	12.0	0.4	1	23	353	375	353	375	0.97
4	12	0.00019	0.012	15.4	2.9	1	23	381	403	381	403	0.99
5	12	0.0026	0.16	11.9	5.5	1	23	410	432	410	432	0.98
6	12	7.4e-05	0.0046	16.7	0.7	1	19	438	456	438	460	0.93
7	12	7.4e-06	0.00046	19.9	0.2	1	23	466	488	466	488	0.98
8	12	3.5e-06	0.00022	20.9	0.8	1	23	494	517	494	517	0.96
9	12	0.0002	0.012	15.4	0.3	1	23	523	546	523	546	0.95
10	12	6e-05	0.0037	17.0	3.3	1	23	552	574	552	574	0.99
11	12	6.3e-05	0.0039	17.0	0.4	1	23	580	602	580	602	0.94
12	12	0.00036	0.022	14.6	0.1	1	23	608	632	608	632	0.92

Sequence Information

Coding Sequence: ATGACGGCCGACGGCGACAGAGGGACGCCCGTCTGCCTCATCTGCAACGCGAGCATCGGCGTTTCGACGAGAAACAACTGCCCGATATTTCAATACAACGTAACCTCCTCGGAACAGCCTGTCGCAAACATCCTCAGCGTTATCTTAGGCCAGGAAGTCAGGAAAGAGCTGATACACAGCGAAATCATTTGCAAGAAATGCTACAAACTCTGCAATGAGGTGGACGAGCTCCAGGAGAGGCTCACAGAAATCAAAATGGAACTCAACAATTATTACCAGAGGACCCTCAGGAAAGTTGGTGGTGCACAGGAAGACGATGTGGAAACGCCATCGAGAGTTATTTACCTTACCAGTAATAAAGACAAACCATCCCCGTCCACCAAGAAAGCACCGGGGCGTCCAAGAAAAAATGTGCAAAGTGCAGAAAATGGAACTGCCTCTGAAGTAGTTGAAGCTGTTTTGGACGATGTTGAAGAGGAAGATATGGCTGAAGATGATATCCTGGGAGTTGGAGTGGATGATGATCCCACAGCTGACTACGTGccgaaaatgaataaaaaaagcgATGGGATCAAGAGATCACAGGAAGGACTCGTAGAGGGAAATTCCAGTGGGGTGGATATGAAATTAGAAGAATCGGATGAGGACAATCAAGGCGATGATGACGACGATGCCGAAGAGAAACCATTGGCACCTCGAAGGAAGCCGATACCGAAGCCTAAAGTTACCGACACTGACTTTAGCAACATTATTCCTCAAATGATTATAAGCAGAGACGGGAAAATTTACACTTGTTTGCTGTGTTCAGCCGATGAGAAAGTACAAGGCGAGGCTAAGTCTATTGTAGCCCATATGAAAACGACACACAACATAAGGCTTTACATCTGTGATATGTGCGGAATGGAGTTCCTCAAAAGGGCGGATATGTCACAGCACATTGACGAACATGTAGGGAATGATGAAGGTGAGTATGAGTGCGATGTATGCCAAAGGGTATTCACAAACATCCGCCTCTACAGAGTGCACAAAAGAATGCACTTCCCACAGCAAAAAAATCACGTCTGTGAAGCATGCGGCAAAGCATTTTTaTCTAGAAACATGCTTGATGAGCATATGAATACGCACACAGGGGCAAGACCTTATAAGTGTTCTGAGTGCGGGAAGGATTTTGCATCTAAATATTCTCATAAAGCTCATGAAAAAACACATGTCGAACGGCCGAGACCTTTCAAATGCTCTCATTGCAGCAAAACATTCGCCACCGAATCCAGCCATGCCCAGCATGAAAGGACCCACACCGCTCCTAGAAATTTCCCCTGTCAGATCTGcgGGAAATCTTTCAGTTCCGGTCGTAATTTAGAAGTCCACTGTGTAATCCATACAGGATTTAAGCCGTTTGTCTGTAGGATGTGTGGAAAAGCATTTGCAAGAAAAGCTGAAATCAGGGATCACGAAAGGACGCACACCGGAGAAAAGCCTTATCAGTGCGAGTTCTGCGGTGCAACTTTTGGacAAAGAAGCAATTTACAATCTCACAAAAGAGCCACTCATTATGATGATAAACGCTATCAGTGTATTGAATGTGGTAAAGCGTTTAAAAGGCGACGCCTGCTGGATTACCACATCAAGGCGGCTCATACGGGTGAAAGGCCTTACAAGTGCCAGCTGTGTAGCGCAACTTTTATTTATcctgaacattttaaaaaacatagacGAATTCACACTGGTGAAAAGCCGTATCTCTGCGAGgttTGCGGAAAAGCTTTCAACAGCCGTGACAATAGAAATGCCCATAGGTTCGTCCATAGCGATAAAAAACCCTATGAATGTTTGGTATGTGGTGTCGGTTTCATGAGGAAACCGCAACTCTACAATCACATGCAATCTcagGGCCATATTAATGACACAATAGTGGTGAATCAGCCAAGACTTACGACAGACGATGAACTCATAGCGCAACAAGAGCAAGAATCTCGAATGGAAATGATAATAACTGAAAATCAAGAGACTGGGCTTGAAGAAGGGgataatCCAAATGATACCAAAATGTATATTAGAGAATTAAAAGAACACGTCATTATACAAGGAAAGGGGCAAGAAATTGGAGAAGACGGCCAGTACACAGAGGAAGTTGGCCATCTAATTATCGATGGACAGGTACAATTCGCCGATGGCGAAGCCCTTGAGATCGAGTCGACCGCTATTGCTGAGGGCCTTGACGGCCAACATGCACTCGTCATTCCTGCTTCGAGGCACACAGGTGAGTTTTCGGTCGAGGCCGCAGAGGGCGGCACGACTGTACAGACACCAGACGGGCTCCATTTAGTCATCAGCCTACCTGATTCTGATACAAACCAGCCCAATACATGGTTCAACATAGTCCAACAACAATAA
Protein Sequence: MTADGDRGTPVCLICNASIGVSTRNNCPIFQYNVTSSEQPVANILSVILGQEVRKELIHSEIICKKCYKLCNEVDELQERLTEIKMELNNYYQRTLRKVGGAQEDDVETPSRVIYLTSNKDKPSPSTKKAPGRPRKNVQSAENGTASEVVEAVLDDVEEEDMAEDDILGVGVDDDPTADYVPKMNKKSDGIKRSQEGLVEGNSSGVDMKLEESDEDNQGDDDDDAEEKPLAPRRKPIPKPKVTDTDFSNIIPQMIISRDGKIYTCLLCSADEKVQGEAKSIVAHMKTTHNIRLYICDMCGMEFLKRADMSQHIDEHVGNDEGEYECDVCQRVFTNIRLYRVHKRMHFPQQKNHVCEACGKAFLSRNMLDEHMNTHTGARPYKCSECGKDFASKYSHKAHEKTHVERPRPFKCSHCSKTFATESSHAQHERTHTAPRNFPCQICGKSFSSGRNLEVHCVIHTGFKPFVCRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFGQRSNLQSHKRATHYDDKRYQCIECGKAFKRRRLLDYHIKAAHTGERPYKCQLCSATFIYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGVGFMRKPQLYNHMQSQGHINDTIVVNQPRLTTDDELIAQQEQESRMEMIITENQETGLEEGDNPNDTKMYIRELKEHVIIQGKGQEIGEDGQYTEEVGHLIIDGQVQFADGEALEIESTAIAEGLDGQHALVIPASRHTGEFSVEAAEGGTTVQTPDGLHLVISLPDSDTNQPNTWFNIVQQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -