Clec009717.1
Basic Information
- Insect
- Cimex lectularius
- Gene Symbol
- Sall1
- Assembly
- GCA_000648675.3
- Location
- NW:396486-427261[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.083 5.1 7.1 0.0 8 23 59 74 54 74 0.95 2 12 3.7e-05 0.0023 17.7 0.6 1 23 80 102 80 102 0.97 3 12 8e-05 0.005 16.6 2.7 1 23 230 252 230 252 0.96 4 12 5e-07 3.1e-05 23.6 1.0 1 23 258 280 258 280 0.98 5 12 4.8e-05 0.003 17.3 1.0 1 23 286 308 286 308 0.94 6 12 1.3 82 3.4 0.1 10 23 312 325 311 325 0.95 7 12 4.2e-05 0.0026 17.5 0.3 1 20 331 350 331 352 0.94 8 12 0.0013 0.078 12.9 1.4 5 23 700 718 699 718 0.95 9 12 5.8e-07 3.6e-05 23.4 0.8 1 23 724 746 724 746 0.98 10 12 4.2e-05 0.0026 17.5 0.3 1 20 758 777 758 779 0.94 11 12 0.0018 0.11 12.4 2.3 1 23 866 888 866 888 0.96 12 12 4.2e-05 0.0026 17.5 0.3 1 20 894 913 894 915 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGAGGATATTGAAGAAGCTAGATGCTGGACTTGGAGGACACGATCTCAGGCAAATTAAACCCCCGACGGAGGCTCAACCCAAGATGCACACTGGACGGCATAAAGGACTGGCGTTCTCGTCGGGCGTCAACAAGGAGAGATATATGCATTCCTGTGCAGTGGgccaaaaaattttcaaagaccGGTATGCCCTGAAGGTTCACTTCAGGATACATACCGGTGAGAAACCGTTCGTCTGTGAAATATGCGCACGTGGGTTTTCTCAGAAAGCCCACCTATTAAAACACAAGGAAATCCACGAAGGAATGTATATAACATATGTGTTTTTGTATGTTGCAGGtaagaaaaaaatggagaatcagACTGAGGAATTTTATGCGTTCCCTAAAATCGAAGTCGAGGAAAACGACTTCATGCACGACAACGGACAGTTGGAGAACAGCCGGTACACATATCACGGCCGGATACCAAATTGTGACGGTATGTGCACCTTCCGTGCATCAAATAATGAAGAATTTGAAGGCATATCTATGCAGTTCCTCCACGTCCTCTTCCACTTGGATGAGAGGACATTACAAAAGATAGATGCAGGAACCCCGACGGGGACGCTACACAGGGTGCATTCTGGACGGCGGAAAGGAATGGCTTCCAAATCAGGCGTAAGTAAAGACAGGTATATGCACTTCTGTACAGTCTGTAGTAAAGGTTTTAAAGACCGGTATGCCCTGAAGGTTCACTTCAGGATACATACCGGTGAGAAACCTTTCGTTTGCGACATTTGTGAACGTGGATTTACACAGAAAGCCCACCTTTTGAAGCATTTGAGGATACATACCGGTGAGAAACCGTTCCTTTGCGAAATATGCGAGCGTGGGTTTTCACAGAAAGCCCACCTTTTAAAACACAAAGAAATCCACTTTAATGGTTTTAAAGACCTGTATGCCCTGAAGGTTCATTTCAGGATACATACCGGTGAGAAACCTTTCGTTTGCGATATTTGCGAACGTGGATTTACACAGAAAGCTCACCTTTTAAAACACAAGGAAATTAACAAagtcaataagaaaaaaatgcagAATCAGATTGATAATATTTATGCACTCCCTGAAATCGAAGTCGACGAAAACCACTTCATACCCGACAACAGACAGATGGAAAACAGACGGTACACATATCACGGCCGGATACCAAAATGTGATGTTACGTGCACTTTCCgtgcattaaataataaagaattagaTGATATTTCTATCCATTTCCTCCACATCCTCTTCCACATGTACGAGAGGACATTACAAAAGCTGCAGATCTCCAGGAAAGCCGAACAAATTGAAAAAGCTCACCATTCTGAAGAAATGAAGCAGGTGACTCAGGAAAATAACTGCGTGTACACATGCTTCCCGTGTGACGGTGCTTTCCGAGCATTACTGATTGATAGGTTGGACGTCATTTCAGTCCATTTCCTCCACATCCTCTTCCACATGGAGGAGAGGATATTGACGAAGATAGATGCTGGACTTGGAGGAAACGAAAACAGGCATATTAAACCCCCGACGGAGACCCAACCCAGGATGCACACTGGACGGCATAAAGGACTTTCAAGGACTCTTCAACGTCGAGAGTCAACAAGGAAAGGCATCTGCATTTCTTTGCAATCTGTCGCAAAGGTTTTGAAGACCGATTTGCTTGAAAAACCGTTGGAATGGAAACTTACGTACGACGAAGAGGCGCTAATCCGCGGTGTTGCCATACGGAAAGGTGTAGCAAAGTCAATCAATATGGAGAATCTGGCTGAAGGTTTTTTACCCCAGATCGACGTAAACGACAGTGACTTCGCTTACGATAATTCTTGCTACAGTACGTGCACCTTCCGTTCATCCACGTTTGACGGATTGGAtgaaagttcaataaatttCCTCCACATGCTCTTTCACACGGATGAACGGATACTACAGAAGATTGACGCCGGTGTTCAAGGAAGCCAGAACAGATGTATGAATCCCCCCACGGGGACGCAACCCAGGGTGCATACTGGACGGCGGAATGGAATGGCTTCCAAATCAGGCGTAAGTAAAGACAGGTATATGCACTTCTGTAATAAAGGTTTTAAAGATCGGTATGCCCTGAAGGTTCACTTCAGGGTACATACCGGTGAAAAACCTTTCGTTTGTAATATTTGCGAACGTGGATTTACACAGAAAGCTCACCTTTTGAAGCATATGGAAATCCACGTTCATTTCAGGATACATACCGGTGAGAAACATTTCGTTTGCGATATTTGCGAACGTGGATTTACACAGAAAGCTCACCTTTTAAAACACAAGGAAATAGTAGCAAAGTCAATCAATATGGAGAATCTGGCTGAAGATTTTTTACCCCAGATCGACGTAAACGACAGTGACTTCGCTTACGATATTTCTTGCTGCAGTACGTGCACTTTACGTTCATCCACGTTTGAAGGATTGGACGAAAGAAGTCAGCCAGAACAGATGTATGAACCCCCTCCCACGGGGACGCAACCCAGGGTGCATACTGGACGGCGGAATGGAATGGCTTCCAAATCAGGCGTAAGCAAAGACAGGTATATGCACTTCTGTACAGTTTGTAGTAATGGTTTTAAAGACCGGTATGCCCTGAAGGTTCATTTCAGGATACATACCGGTGAGAAACCTTTCGTTTGCGATATTTGCGAACGTGGATTTACACAGAAAGCTCACCTTTTAAAACACAAGGAAATAtaa
- Protein Sequence
- MDERILKKLDAGLGGHDLRQIKPPTEAQPKMHTGRHKGLAFSSGVNKERYMHSCAVGQKIFKDRYALKVHFRIHTGEKPFVCEICARGFSQKAHLLKHKEIHEGMYITYVFLYVAGKKKMENQTEEFYAFPKIEVEENDFMHDNGQLENSRYTYHGRIPNCDGMCTFRASNNEEFEGISMQFLHVLFHLDERTLQKIDAGTPTGTLHRVHSGRRKGMASKSGVSKDRYMHFCTVCSKGFKDRYALKVHFRIHTGEKPFVCDICERGFTQKAHLLKHLRIHTGEKPFLCEICERGFSQKAHLLKHKEIHFNGFKDLYALKVHFRIHTGEKPFVCDICERGFTQKAHLLKHKEINKVNKKKMQNQIDNIYALPEIEVDENHFIPDNRQMENRRYTYHGRIPKCDVTCTFRALNNKELDDISIHFLHILFHMYERTLQKLQISRKAEQIEKAHHSEEMKQVTQENNCVYTCFPCDGAFRALLIDRLDVISVHFLHILFHMEERILTKIDAGLGGNENRHIKPPTETQPRMHTGRHKGLSRTLQRRESTRKGICISLQSVAKVLKTDLLEKPLEWKLTYDEEALIRGVAIRKGVAKSINMENLAEGFLPQIDVNDSDFAYDNSCYSTCTFRSSTFDGLDESSINFLHMLFHTDERILQKIDAGVQGSQNRCMNPPTGTQPRVHTGRRNGMASKSGVSKDRYMHFCNKGFKDRYALKVHFRVHTGEKPFVCNICERGFTQKAHLLKHMEIHVHFRIHTGEKHFVCDICERGFTQKAHLLKHKEIVAKSINMENLAEDFLPQIDVNDSDFAYDISCCSTCTLRSSTFEGLDERSQPEQMYEPPPTGTQPRVHTGRRNGMASKSGVSKDRYMHFCTVCSNGFKDRYALKVHFRIHTGEKPFVCDICERGFTQKAHLLKHKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -