Clec002239.1
Basic Information
- Insect
- Cimex lectularius
- Gene Symbol
- L
- Assembly
- GCA_000648675.3
- Location
- NW:1225460-1375925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.4e-06 0.00021 21.0 1.0 1 23 108 130 108 130 0.98 2 23 0.039 2.4 8.2 6.5 1 23 136 158 136 158 0.97 3 23 1.6e-06 0.0001 21.9 0.9 1 23 164 186 164 186 0.99 4 23 7.5e-06 0.00047 19.9 0.3 1 23 192 214 192 214 0.98 5 23 0.00014 0.0088 15.9 0.1 1 23 229 252 229 252 0.97 6 23 0.068 4.2 7.4 1.0 2 23 327 349 326 349 0.92 7 23 0.036 2.2 8.3 0.1 1 23 359 382 359 382 0.95 8 23 0.12 7.3 6.7 0.3 3 23 448 468 447 468 0.98 9 23 0.01 0.62 10.0 0.1 2 23 487 508 486 508 0.96 10 23 0.00035 0.021 14.6 0.4 1 23 516 539 516 539 0.95 11 23 0.17 11 6.1 0.3 1 23 544 567 544 567 0.96 12 23 2.4 1.5e+02 2.5 0.2 2 23 618 639 617 639 0.89 13 23 7e-05 0.0043 16.8 1.4 1 23 643 666 643 666 0.98 14 23 3.5 2.1e+02 2.0 1.7 3 23 745 767 744 767 0.82 15 23 0.051 3.2 7.8 0.8 2 23 789 812 789 813 0.95 16 23 0.0017 0.11 12.4 4.1 2 23 825 846 824 846 0.95 17 23 0.0029 0.18 11.7 1.7 1 23 856 878 856 878 0.99 18 23 3.2 2e+02 2.1 2.4 2 23 886 907 885 907 0.95 19 23 0.0022 0.14 12.1 1.0 2 23 985 1007 984 1007 0.96 20 23 0.00064 0.04 13.8 0.9 3 23 1013 1033 1011 1033 0.97 21 23 0.35 22 5.2 0.1 2 23 1044 1065 1043 1065 0.95 22 23 0.00048 0.03 14.2 0.1 1 23 1073 1095 1073 1095 0.97 23 23 0.23 14 5.7 0.7 1 23 1102 1124 1102 1124 0.92
Sequence Information
- Coding Sequence
- atgtccagAAGAAAACAAGCCAAGCCGAGATCGCTAAAACgtgAAGACGACAAAGAAGAGTGGGACGTAGAAAAACTGGAAGacAAGGATGAGCTTCCTGTGGAAGCAGAGTCGGCCATGTCTCCAGCCAGCTCTTCGCCCATCTCATCCCTTCACAATTCCGAGGACAGCGATTCAGaggCTCTTGGTACAGAAGCGGGTTCATCGTGGAGTTCAGAAGGACACAGCTCGCCCCCTTCATCATGTGCAACACCCAACTCTGCGTCCGATCTTCCTGATTCCGAACTTACTTTCACTGTCGGTGTTACAGATGCGACACCTTACGCATGTCAGTTCTGTGACAAAGCTTTTCCTCGACTCAGCTATCTTAAGAAACATGAGCAGACCCACAGTGAACACTTGCCATTTGTCTGTGAATTTTGCAAAAGACGTTTTAAACACAAAAGAAGTAAAGACCGTCATTTAAAACTTCATACAGGTGATAAAAGATACAAATGTGCTCAATGCGAAGCTGCTTTTGCGAGAAGcgACCATTTGAAAATTCATATGAAAACCCATGACAATCAAAAGCCTTTCCAATGTACTATTTGCAATAGAGGTTACAATACAGCAGCTGCTCTCACCTCACACATGCAGAACCATAAAAAGATATCGGACTTAGAGACTCAGTCATCTGGAAGTAGTTACAGGTGCCTCGAATGCGCTCAGATTTTTTCCAAACCCGATGACTTGACGgCACATATTATGAACGAGCATCGACGTGGTTCATCGCCGCCTAAGAAGCATAAATCACCTCGGCCTCGATTAGCATGCATTTATTGCACCAAGGATTCTTTTCATTCAATGGAAGCGCTTCAGATTCATGTGCAAGCCATGCATGGTTCTATATTAAACGGGTCGCAGCCATTTATCTTCTCACATGCCCagttaaataatagtaattgttCGACTACTTCGTCGGCCAATTCGAGAAACATGACCTGCCATTTGTGTACAATGACATTCCCGACAGTTCAAGCTTTGCACATTCACGCTACGTCTGCTCATGGATTGGGACAGAGCTGCGAAAATGATTTCCAGTGTTCAAGATGTGGAATCACATTGCCATCTTACGCTTGGCTTGTGgaacattttaacatttctcACCGATCCATCACATCGACCCTTTCTTCCTCTGCTGCCGAACAGTCAAAACCGACGGATTTGAGTGTGAATCGGAAGGAGCAGCAAGAAAAACTGCCCTCGGCAAAAAAGTTCAAGAGTTCTTCCAATTCATTAACTCCACCCAATATCACCAACGCCAGTCAGggaGCTCTTTACGACCATCCTGGCGTTTTACTTTGCAATCAATGCAATGCTGCACTTCCAGACTTTGAATCATTTCGAAGTCATTTAAAATCTCACTTGGAACAgtcagtatttttaaaaatgcctcAGTTGAGACACACCCAAACATCCGTCTGCCCTTATTGTGGAGTACACATAGTTTCATCTCAAGAAATGATTCAGCACATGGAAATCCATTTCAAGTCTTTAACTGAAGATTTTGAATGTCAAATTTGCTTTCAAGCTTTTAAATTATCTGAGGAGTTGCAGAAACATCTTCTTGAAACCCACACTCAACACCTCTACAGGTGCTCATTGTGCAAAGACATGTTTGAATCCAAAGTAGCTATACAGgttCATTATGCAATGAAGCATTgcaatgaaaagaagaaaattaggtGTTCGGTCTGCTTGAGTTTAGGTCCGTTTCAATCCGAGACAGAGTTCAGTCATCATGTCAAGTCAATTCATTGTTCCTCTATTTCAACAGCCTCATCGCCGAGTGTATCTcCGCCAAGAGTGTTAAGGTGTGTCTTTTGCAATGCAACATTCGCCACGGATGTTGATTTCCAATTCCATTTGGCAATACACACTAAACAGTTCCAATGTAATATCTGCAATGAATCTTTTCATGTTGAGTACTTGTTGGAAAAACATGTGCAAACAAATCATTCAAGCACAAAgGGGTCAACAGTAAAATGCGAAGAGGCAGACGAGAAACCTAACGATTTAACATATGAGCCTAATACGACCAACGACTTCCCGTCTAATTCCATGAAAGTATCGACAGACAATATTGGGAATGGAACAGTCGGAAATATCACCAGCAATAACGTGAACAGTACAAATGAAAGTCCTTTAAAAAGGCAAGACTACATGATGAATAACAATGTTTTCAATGGTGTCTGTGATATATGTGAATGTGGGAATTTCACATCAGAATGTGATCTCCAAGCCCACAGAAAATTACTGCATAATGTGAAAACATCATTGAACAAaATACCTAACATAAATTCATCCAGCACCATATTTAAGGGCACTTGTGATATTTGTGagttgaaaaacttttcttccGAAGCGGAACTACTGTCTCATAGGCAAATGATGCACCACTTAAAACCAAATAGTAATTCCAAGttgAGCCTGCACTGCGCATACTGCAAAGAAACGTGCAAAAGCAGGACAGATTTGGAAAACCACATGAAGGCCCACTGTCAATCCGCAATGAGTTCGAATAAGTACAAATGCAACATTTGTGATGAAATGTGCCACTCTGCGAGCGTTCTGGCTGAGCACAAACTCACTCATTGTAAGGTTGTTTTTGGATCCGTTTGTACTCATTGCAAAGCGCAGATTCATAACGAAGAAAGTTTCATTAAACATGTAATGCAGCATACAAATAATGCTGGCAACACAATGAGTAAAGGTCAACAACAATTGGTTCTTCCAGTCGCTTGCGTCATTTGCAGGCAGACTTTAGGTAGCGAAATGGAAACCCGACTTCATGCCAAGTTCCACCTGCAAGTTGAATTGATCCCATGCTCCATGTGCCTTCagggttgtgataaaaaagaacTTAAAGACAGAATATGCACAacatgtcaaaaattaaataaaacatccaCTAAATGTTCCAAatgcaatattaaatttgaGACCCATGGAGCTATGGAGCTCCATATGCTTATGGTTCATGACCAGAGCGACAATTGCAAGAAGTGCAATGAAAAATATGAATCTCAAAAAGAGTATGAACTTCATATGGAaactcatttttcaaatgaaaacaacAATTCTGGAACCAAGTGCAACTTGTGTATGCTCGTCTTCCCCGGCTCAATACAACTCCAGCTGCATTTAATCGAACATACATTCATGGGCTGTTCAAACTACACTTGTTATATTTGTAGTTCAGTATTCACAACGGCAGTCGGCCTTCAATCTCATATTTTAGAGCATGGACTTTCAGCAAGGCCGTACGATTGCCCAAAATGcatgaaaaaatttttcttcaggGCTGAACTGGACAATCATTCTGCACTTCATGCTCAGACTTTTATTCCTAAAACATCTCAGTATGATAAAAGTTCAAGGCAGACAGAAACGCCGAAAAATGATGGGATGAAAGAGCACGATGTTGCGAAGCTGGCTTACAACGACACCAAGAAAAAGCTTCACTCCTTCGAATCTAATAACTTCGACCAAGATAAAACGCACAATGAAAACAGTAATTACACGAATAAATCTTCATCAAAGGAAGTGCATAAATGCGAAGGAGCCTCGATAAAATTGGAAGTTGACTCTGtggaaaattcaaatatttgttcGAGTCAGTATGAAACAATTAAAGGAGCTATGGTGAAAAGGGAAGATGAATGA
- Protein Sequence
- MSRRKQAKPRSLKREDDKEEWDVEKLEDKDELPVEAESAMSPASSSPISSLHNSEDSDSEALGTEAGSSWSSEGHSSPPSSCATPNSASDLPDSELTFTVGVTDATPYACQFCDKAFPRLSYLKKHEQTHSEHLPFVCEFCKRRFKHKRSKDRHLKLHTGDKRYKCAQCEAAFARSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKISDLETQSSGSSYRCLECAQIFSKPDDLTAHIMNEHRRGSSPPKKHKSPRPRLACIYCTKDSFHSMEALQIHVQAMHGSILNGSQPFIFSHAQLNNSNCSTTSSANSRNMTCHLCTMTFPTVQALHIHATSAHGLGQSCENDFQCSRCGITLPSYAWLVEHFNISHRSITSTLSSSAAEQSKPTDLSVNRKEQQEKLPSAKKFKSSSNSLTPPNITNASQGALYDHPGVLLCNQCNAALPDFESFRSHLKSHLEQSVFLKMPQLRHTQTSVCPYCGVHIVSSQEMIQHMEIHFKSLTEDFECQICFQAFKLSEELQKHLLETHTQHLYRCSLCKDMFESKVAIQVHYAMKHCNEKKKIRCSVCLSLGPFQSETEFSHHVKSIHCSSISTASSPSVSPPRVLRCVFCNATFATDVDFQFHLAIHTKQFQCNICNESFHVEYLLEKHVQTNHSSTKGSTVKCEEADEKPNDLTYEPNTTNDFPSNSMKVSTDNIGNGTVGNITSNNVNSTNESPLKRQDYMMNNNVFNGVCDICECGNFTSECDLQAHRKLLHNVKTSLNKIPNINSSSTIFKGTCDICELKNFSSEAELLSHRQMMHHLKPNSNSKLSLHCAYCKETCKSRTDLENHMKAHCQSAMSSNKYKCNICDEMCHSASVLAEHKLTHCKVVFGSVCTHCKAQIHNEESFIKHVMQHTNNAGNTMSKGQQQLVLPVACVICRQTLGSEMETRLHAKFHLQVELIPCSMCLQGCDKKELKDRICTTCQKLNKTSTKCSKCNIKFETHGAMELHMLMVHDQSDNCKKCNEKYESQKEYELHMETHFSNENNNSGTKCNLCMLVFPGSIQLQLHLIEHTFMGCSNYTCYICSSVFTTAVGLQSHILEHGLSARPYDCPKCMKKFFFRAELDNHSALHAQTFIPKTSQYDKSSRQTETPKNDGMKEHDVAKLAYNDTKKKLHSFESNNFDQDKTHNENSNYTNKSSSKEVHKCEGASIKLEVDSVENSNICSSQYETIKGAMVKREDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -