Clec000058.1
Basic Information
- Insect
- Cimex lectularius
- Gene Symbol
- -
- Assembly
- GCA_000648675.3
- Location
- NW:911220-919053[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.1 1.9e+02 2.2 0.6 1 22 359 380 359 381 0.78 2 18 0.06 3.7 7.6 0.2 1 23 387 409 387 409 0.97 3 18 0.00086 0.053 13.4 0.3 3 21 416 434 415 435 0.95 4 18 0.0079 0.49 10.4 4.7 2 23 442 463 441 463 0.94 5 18 0.0041 0.25 11.3 0.1 2 23 470 492 469 492 0.89 6 18 2.5e-05 0.0015 18.2 0.8 2 23 498 519 497 519 0.97 7 18 1.8e-06 0.00011 21.8 0.3 1 23 527 550 527 550 0.95 8 18 0.0039 0.25 11.3 0.3 1 23 559 582 559 582 0.96 9 18 0.039 2.4 8.2 1.4 1 23 605 627 605 627 0.92 10 18 0.0065 0.4 10.6 2.4 1 23 633 655 633 655 0.98 11 18 7.5 4.6e+02 1.0 5.6 1 23 674 696 674 696 0.92 12 18 0.0053 0.33 10.9 0.6 1 23 702 724 702 724 0.98 13 18 2.8e-06 0.00017 21.2 2.4 1 23 739 761 739 761 0.99 14 18 1e-06 6.2e-05 22.6 0.5 1 23 767 789 767 789 0.97 15 18 0.00033 0.021 14.7 0.3 1 23 795 817 795 817 0.98 16 18 0.0005 0.031 14.1 3.4 1 23 823 845 823 845 0.98 17 18 5.2e-06 0.00033 20.4 0.9 1 23 851 873 851 873 0.99 18 18 3.2e-05 0.002 17.9 0.5 3 23 881 902 880 902 0.95
Sequence Information
- Coding Sequence
- ATGAAGCTCGTAGTTAAGAACAATTTTGGGGAGACGGTCACTCTTCAGATCCAACCCGAAGAGACATTCATCGATTTGAAGAAGAGAGTGGAATGCGAGGCCGGGATTTCTTTGGACCTCACTGACATCACGTCGAACGGAAAGAACATGCTCGATACGCAGAAAGTGATGGAATATTTCATGTCTGGAGTGACGCTTTCGGAAGGTGAGAAGGAAGAAGAGGTGAACAACGTGGCCTGCTCGGTGCCTGGCTGCGGAAACACCAAAGCTTCCAACGACGACAAGGTGTTCTTCGACTTCCCTCAGGAGGAGATTAGGTGCCACCAGTGGGTGCTGTATTGTCAACGGCTCTCCATGATATCGGGTAAGCATCGGTTGAGCCTGTCAAACGACTCGGCGATTTGCAGCGATCATTTCAGGACTGATCAGTTCGTCAAAAATACGACTACACTTCTTAAGAGGACGGCGGTGCCCTGCATCAATCCCGAGCTCCCGGCCGTCGACAGCCTGAAATACGGCAACATACAGAAGATACGGCCGACGAAATCGGACGATACGACGGCCGACGAGCTCATCTGCAGACTCTGCGCCAAAGGTTGCAGGGACTGCATTTTCATTTACAGCAAGGAGGGTCGCCGCTTGGAACTGGCGGAGAAAATCAATAGTATTTTACCGGTAAATGTTAAAATGATGGACAATCTTCCCAAACAGGTTTGCGGACCGTGTATAGAGCAACTGAACTCGTTGTCGTATCTGGCCAAGCTTTCTACTACTTCGGAAAGCCGGCTGAACGAGGTGATGAGCGAAAACACCCCTAAAAATATCGTACTGACGGACGGAAGGGACGTGACTTTGCAGCCGACGGAACAGTCTTGTCCACTGTGCTACGAAGGCTGGATAGGGAAGCTGGAAGAAGAGAATAAAGAGAAGGAAGAAAAGGAGCCGGAACCCGAACAGGCGCCATTGCCAGAAGAAGCCCCTTTTCCGGCTTCACAGATAAAAAGTGAAATCAACCAAATTTCGACCGACGAATCGACACAAGAGACGACGTTAAGCAGTACAGAAGAAAAAACCTACAAATGCCGAGTGTGCAGAGAAGAGTTCGAAGAGTTCCCGTCAGTCGTGCAgcactctttctctcatttcGAGGACGGCTTTTATCAGTGTGTTCTGTGCGAGGTCTGCTATCCTTCTCCTACGGCGATGGTGGACCACCTATTTTCTCACAAGCCGCAAAACAACGCATGCCAAGAATGCGAGATGTCTTTCAAAACAGAGGCCGAATTGACCAATCATATCTGTGACACCAACAAACCCTTGATAAAGTGCAAGATGTGCAGTAAGTCTTTTAGGTCCCAATCTAGGCTAGAATTTCATATgcattttcacaataatataaatcaagTATATTGCGAAACTTGTGGGAAAGGATTTCCGGACGAAATCAAACTTTACAAACACACTGTTCAATTGCACGGGAACGAGAAAAATAAGTGCGACGACTGTGGAAAAATATTCAGCACCGTCAACTCTTTAAAGTATCACGAAAAATCTCATCAAGGAACCAATTGTAAACCTTACGTTTGCGAATGGTGCGGTAAAGGATTTATACGCAAAAGTATGCTCAGGAACCACGTTACATCAACGCACAGGCTGATTCAAGAAGTGACTTGCTTCACGTGCAAAAATTGCAAAGAAGCTTTCGCGACGACGACTCTCGCGGTGGCCCACATGGAATCGAAACACGGAGAAACCGAAGGCAAAGGTGACGAACAGTCCTATAGTTTCGAAATGCACACGGTCTCACGACTGTTTATTTGCGAGTACTGCGAAAAACATTTTGCCCaagggaaaattttaaacaagcaCAGGGAAGACCACGTTACGGACAACCCCTATTCCTGCAAGTACTGTTCTCAGACTTTCCCGTCCTTCGCGGAGCAGTCTAAACACAAAAGCACTCACAAGGATACCGACATCCCTCTCGAGTACCACTCGGAGATCAACATCCCTGTAAACTACCTTTGCGAGTTCTGTAATAGatgttttttaaaccatttgaaGTTTACCGAGCATTTGACGATTCATTACGGCCCGGAACCGTATGTTTGCAGGTTGTGCAATCTCAAGTTCGCGACGTTGCAGGAAGTCAGTCAGCATCGTCTCACACACGGTTCAAACGAGCCGTTCGAAGAGTTCGATTTCAACAGGCCTTACGAATGCCACTACTGCAACAAATGCTTTGCCATCGAGGACGCCCTTGTCAAACACATCAGGATGCATACTGGGGAGAAGCCATTCATCTGTGACCAATGTGGCAAAGGCTTTTCCCAGAGCTCGGGTCTCAACACTCACAAGAAGGTCCACTCGGACCTCCGCCCTTATTCTTGCCCGCTCTGCCCCCGGACCTTCAAGATCAAAGGCGACCGTGACGTCCACATCAGAAAACACTCCGGCGACAGGCCGTACAAGTGTGAGTTCTGCGGTAAGGCGTTCATGACCCAACACGTGTACTCGCAGCACAGGAAGATCCATACCGGAGAGCGTCCTTACAAGTGCGACGTCTGCGGTATCGCCTTTAGGCGCTCTCACGTCCTCACCGTCCACAAGAGAATTCATACAGGTGAGAAACCCAACATTTGCGACATCTGCGGAAAAAGATACAGGCAGAAAGGTGACATGCTCAAACACCGCAGAGCTCAACATGGAAATATCAAAATCCAGGGAGCTCACTTTTTAAATCTACCAATTGttgaagttttaaataaaattgtataa
- Protein Sequence
- MKLVVKNNFGETVTLQIQPEETFIDLKKRVECEAGISLDLTDITSNGKNMLDTQKVMEYFMSGVTLSEGEKEEEVNNVACSVPGCGNTKASNDDKVFFDFPQEEIRCHQWVLYCQRLSMISGKHRLSLSNDSAICSDHFRTDQFVKNTTTLLKRTAVPCINPELPAVDSLKYGNIQKIRPTKSDDTTADELICRLCAKGCRDCIFIYSKEGRRLELAEKINSILPVNVKMMDNLPKQVCGPCIEQLNSLSYLAKLSTTSESRLNEVMSENTPKNIVLTDGRDVTLQPTEQSCPLCYEGWIGKLEEENKEKEEKEPEPEQAPLPEEAPFPASQIKSEINQISTDESTQETTLSSTEEKTYKCRVCREEFEEFPSVVQHSFSHFEDGFYQCVLCEVCYPSPTAMVDHLFSHKPQNNACQECEMSFKTEAELTNHICDTNKPLIKCKMCSKSFRSQSRLEFHMHFHNNINQVYCETCGKGFPDEIKLYKHTVQLHGNEKNKCDDCGKIFSTVNSLKYHEKSHQGTNCKPYVCEWCGKGFIRKSMLRNHVTSTHRLIQEVTCFTCKNCKEAFATTTLAVAHMESKHGETEGKGDEQSYSFEMHTVSRLFICEYCEKHFAQGKILNKHREDHVTDNPYSCKYCSQTFPSFAEQSKHKSTHKDTDIPLEYHSEINIPVNYLCEFCNRCFLNHLKFTEHLTIHYGPEPYVCRLCNLKFATLQEVSQHRLTHGSNEPFEEFDFNRPYECHYCNKCFAIEDALVKHIRMHTGEKPFICDQCGKGFSQSSGLNTHKKVHSDLRPYSCPLCPRTFKIKGDRDVHIRKHSGDRPYKCEFCGKAFMTQHVYSQHRKIHTGERPYKCDVCGIAFRRSHVLTVHKRIHTGEKPNICDICGKRYRQKGDMLKHRRAQHGNIKIQGAHFLNLPIVEVLNKIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339936;
- 90% Identity
- iTF_00339936;
- 80% Identity
- iTF_00339936;