Clec010345.1
Basic Information
- Insect
- Cimex lectularius
- Gene Symbol
- Zbtb41_1
- Assembly
- GCA_000648675.3
- Location
- NW:729900-735572[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8e-05 0.003 17.3 2.0 3 23 118 138 117 138 0.97 2 13 0.0012 0.075 12.9 0.1 1 23 144 167 144 167 0.96 3 13 9.8e-05 0.0061 16.4 5.9 1 23 173 195 173 195 0.97 4 13 2e-05 0.0013 18.5 0.7 1 23 201 225 201 225 0.96 5 13 3.6e-08 2.2e-06 27.2 0.5 1 23 231 253 231 253 0.98 6 13 7.7e-06 0.00048 19.8 0.2 1 23 259 281 259 281 0.94 7 13 0.00038 0.023 14.5 3.2 1 23 287 309 287 309 0.97 8 13 4.9e-06 0.00031 20.4 4.1 1 23 315 337 315 338 0.94 9 13 1.4e-05 0.00089 19.0 2.5 1 23 397 419 397 419 0.97 10 13 0.0004 0.025 14.4 2.0 1 23 425 447 425 447 0.97 11 13 3.1e-09 1.9e-07 30.5 2.0 1 23 453 475 453 475 0.98 12 13 6.9e-05 0.0043 16.8 0.6 2 23 491 512 491 512 0.98 13 13 4.8e-05 0.003 17.3 4.1 1 23 518 541 518 541 0.98
Sequence Information
- Coding Sequence
- ATGCCAACCGACCTTCCAACTCCATTTGCAAAAGAGACTGAcggaaataatatGCATGAAGGTGATGGCCTTCCATCATTGATTTGTCACCGGTGTCTGTACCATGTTGAACAGATAAACGAATTCAAGATTCAGTGTGAGCAATCGGACGCGCTTCTTCGGCAGATCGTGTCATatcatGGTGTTAAAACGTTCAAAGACATCTCAATGTTAGAAAGACAATGCAATGGCGTCAATGAAAATGACTATTCAGAAGAAGAGTACTgtataaaaaaggagaaaactaGTGACAACGAGGAGGAAATCAATGGAGATGAAAATGAAAcAAAATCGGACGATGGTGTTAACAATTGTCCGACATGCAATAAGCATTTTGACgatgagaaaaaattagaaaggcACCAACTTATTCACTCACAAgatgGTCCCTTTCCTTGTGATTATTGTGAAATGTCTATGTCAGACAAAGCCGAATTGCGACTTCATTGGAGACAGGAACATGCTGGAAGCAATTGTCACATGTGTCAAACTTGCGGTGAGTCGTTTGTGAATAGGGAACATCTGCTCAAACATCACCTTAGGCATGACAAAGTGAAGCCCTATCGGTGTTCGGAGCCTTCCTGCAAGAAAGCTTTTTCATACAGATCTGACTTGAGAAAACATTTAGTAATACATAcagGTTTACGACCTTACGTTTgtccaatttgttttaaagcttTCACAAGGAGCACAAATTTGAACAAACACGCCCGAGTGCATTCGGGGCGGAGGCCGTTCTCATGTGGTGAGTGTGATAAAATGTTCGCAACGAGGGGTGATCTAATCAGGCACTCTTTTATACACACAGGGGTCAAACCTTACTCCTGTCCGATCTGTTGTTTATCTTTCAATCGGAAAGATAAGTTGACCAGGCATGAAAAATTGCATAAAGAACAGAGGGCCCATATGTGCAATATATGCCCTACATCGTTCAACAGGAAAGAAGAACTCACGAAGCACATTCAGTTCCATCACTTTCTACCTCCTTCCtctTATGAAGAGGATTCAACCGAGACCGGTTCTCAacgtgaaaatgaaaaatattcagatgagAATGGTGGTGATCATTTAGAGTTTcctgagagagtgagtgaagaCACTGAAGATGTCGTTATTAATGTAGATCCTTTGAACTGGACAGAAACAAAACACCAGTGTCAGATGTGTGACAGGTCGTTTAAAACAATTGAGGACTTGACAAAGCACAAAGCAAGCCATGAAAAAAGCCGGAACTTCATCTGCGAAATCTGCTTCAAAGGTTTCCACCAGAGGAGGGAGCTTGTGCGGCATTCGCTCACGCATACCGGTTTCAAGCCGTTCTCGTGCGAAACGTGTGGTAAGGCGTTCTCGAGGCGCGATAAGCTCACGAGGCACATGAGAACCCATATAATGCCAAAAAGGACATCGAAGGCCATCTACAAAGAGCCTCCGACTTGTGAAATTTGTTTGAAAGTCCTCTCCTCACCTCATGAATTGTCAAGGCACATTCTCACCCATTCGTTTTTCAAGCCGTACCAGTGCAATTACTGCACATCTTCGTACTGCAGAAAAGATAAACTTGTCAAACATATTAGAAACATTCATTCTGAACAAATCCCAGAAAATGAGATTAAAAACATCAGCCCTTAA
- Protein Sequence
- MPTDLPTPFAKETDGNNMHEGDGLPSLICHRCLYHVEQINEFKIQCEQSDALLRQIVSYHGVKTFKDISMLERQCNGVNENDYSEEEYCIKKEKTSDNEEEINGDENETKSDDGVNNCPTCNKHFDDEKKLERHQLIHSQDGPFPCDYCEMSMSDKAELRLHWRQEHAGSNCHMCQTCGESFVNREHLLKHHLRHDKVKPYRCSEPSCKKAFSYRSDLRKHLVIHTGLRPYVCPICFKAFTRSTNLNKHARVHSGRRPFSCGECDKMFATRGDLIRHSFIHTGVKPYSCPICCLSFNRKDKLTRHEKLHKEQRAHMCNICPTSFNRKEELTKHIQFHHFLPPSSYEEDSTETGSQRENEKYSDENGGDHLEFPERVSEDTEDVVINVDPLNWTETKHQCQMCDRSFKTIEDLTKHKASHEKSRNFICEICFKGFHQRRELVRHSLTHTGFKPFSCETCGKAFSRRDKLTRHMRTHIMPKRTSKAIYKEPPTCEICLKVLSSPHELSRHILTHSFFKPYQCNYCTSSYCRKDKLVKHIRNIHSEQIPENEIKNISP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -