Clec010606.1
Basic Information
- Insect
- Cimex lectularius
- Gene Symbol
- su(Hw)
- Assembly
- GCA_000648675.3
- Location
- NW:690408-712170[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.2 2e+02 2.1 0.2 2 21 113 132 113 133 0.87 2 13 0.00021 0.013 15.3 1.6 1 23 231 254 231 254 0.98 3 13 1.7e-05 0.001 18.8 1.8 1 23 259 281 259 281 0.98 4 13 1.9e-05 0.0012 18.6 1.1 1 19 287 305 287 308 0.95 5 13 1.7e-07 1.1e-05 25.0 0.3 1 23 319 341 319 341 0.97 6 13 0.0019 0.12 12.3 2.4 1 23 351 373 351 373 0.98 7 13 1.3e-06 8.1e-05 22.3 0.9 1 23 379 401 379 401 0.99 8 13 5.7e-06 0.00035 20.2 1.7 1 23 407 429 407 429 0.98 9 13 2.9e-05 0.0018 18.0 6.5 1 23 435 457 435 457 0.94 10 13 1.9e-05 0.0012 18.6 0.6 1 23 469 492 469 492 0.96 11 13 3.1e-07 1.9e-05 24.2 1.6 1 23 498 520 498 520 0.98 12 13 3.3e-07 2e-05 24.1 1.3 1 23 526 548 526 548 0.98 13 13 2.1e-06 0.00013 21.6 2.0 2 23 555 577 555 577 0.96
Sequence Information
- Coding Sequence
- ATGAGCCCTAAGGGTGTGAAGGCGGCCGCGAAAAGGGCCCCGTTGAAGCCCAAGTCGACGAGAGGGACGAACAACAACTTACTCAAAGATCCGTTGGAAACAGAATCgaaaaaagaagatttgaagGAAAACGAGATCGCAAAGGACAAATCGCCCGTGCAGATGACGAGGGCGAGAAAGCCGCGCGCTGCCAAAGGAGATCCACCGAAGAAACCAACACCCAAGAAAGCCATAAAAAAGAAGATGTCTGTGGGAGCAACGGGAAGTAAAAAGGTAAACCCTGAGAGCCCTGGGAGCGTTAGCAACGATGAAGAGAATAAATTCACCCAACAGGCGAAATGTGGTTACTGTATGACAACATTCAAATCTATCGTGGGCGTTAAAATACATGAGAAGAAATGTAAACTGAAACCCACAGAAAACGGCGAAGCTAGGATCTCAGTGGTAAAAACAACCCAATTACAGACGAATGGCATCAAATCATCTGTGGTGAACAGAGAGCCGTGTACTAATGGAATGGACCAATCTTCATCGCAAGAAGTCCAAAATGGTGTAGAGATGATGTTAAATGACAAAGAATATGAGAGAAATACACCATCCCAACCCTTTGATCAAATGATAGtAAAACTTGATGACAGTCTCTGCACATGCTGCGGCGAAAATTTAGAGACAGCTCATATCTCTGGTGATTTTGAATGTTACGAATGTAAgaagtttttccttttgaaatcgTCACTCGAGCGACACATCAAGACGATACATCAAGGAGATAGCCACAAATGCCCCCAATGCGGTGCAAGGTGTCCCGACAAAGGGACTCTTGCTAGACATATGTACACACACACAGgCCTTAAACCCTATTCCTGCCCTGTTTGTAAACAGGAATTCAGCAGGAAATATCATCTAGTTAGGCACAATATGCAAACTGGTTGTGATGGGAAGGAAAAGCCCATTTTCCCTTGTCAGGTATGTGGTCgtgaatttaatagaaaagACAACCTCAGGGAACATCTGAGAGCACATGCAGGCCAGACCAAACGTAAAAAGCTGTTCTCATGCGATTTTTGTGGAATGGAATTTTGTGGAACCAACCTCCTTCAAATCCACAAAAAAACACATACTGGGGAGAAGCATTACGTCTGCGATTTCTGTCCGAAAAGATTTCCGACAAGTGGCGCAATGAAGAAACACAGAAGAACTCACACTGGTGAACGACCGTACGAATGTGATACTTGCCACAAGCGTTTTGCTGCAAAAGAAACTCTAAACAGGCATGTTCGCATTCACACTGGCTACAAGCCGCATTGTTGCAATTATTGCGGAAAACGTTTCATCCAGTCTTCACAGCTTCGGTCCCATCTTTTCTATCACACTGGGCAAAATGttttacaGCAGAACGAAGCGTTTGTATGCGAATTGTGTGGAAAGAAGTTTAATAGAAGAGCGCGTCTGAACGAACATGTGAAATATGTTCATCTAGGGGCTAAACCGTTTGAATGCGACCATTGCAGTAAAACATTTATAAGGAAAGAAGATTTAAATAGGCACTTGATCATTCATTCTGGTATAaaagcaCACCAGTGCCCAATTTGTAGCAAGTCTTTTGCCATGAAATCTTCCCTCAAAGTCCATCTTTTAACACATACCAAAGAACCTCCGAGGTCGTGTGACGAGTGTGGAAGAGCTTTCATTAGGCAGGACTGCCTGCTCAGGCACATGAGGAACAAACACAGAGACATGCTGGAAGAAATCAGATCGGaggctgaaaagaaaaaactccagCAACAATTGCTCCAGgtggCAGCTGAGGCGAGTATAGTTGAAGGGCTGGAAGACAGGGCTGAACTGGACGAAAAAGGATTAACCGATGCTGTAAGGGAATTGTTGACGTTGCTCGTGGATGAGGCTACTTTAAGAGGCCTAGGTTGGCCGGAAGCCGGCGTTGAAGCTTTGCTCGAAGCCGTCATAAGACGATGCGGTCACGAACCAGCTTCGTTGTCAATTCCTCATCACGAACGTCTCAGGCACAACATCAAGTTACTCTTCACCGTTGTCATCGATGACTCAGCTGTCAAAGCACTACTCAACAACCAATCCGTCGATGAAGTAATACTCCATGTACTCAGATTAGCCAAATCATAA
- Protein Sequence
- MSPKGVKAAAKRAPLKPKSTRGTNNNLLKDPLETESKKEDLKENEIAKDKSPVQMTRARKPRAAKGDPPKKPTPKKAIKKKMSVGATGSKKVNPESPGSVSNDEENKFTQQAKCGYCMTTFKSIVGVKIHEKKCKLKPTENGEARISVVKTTQLQTNGIKSSVVNREPCTNGMDQSSSQEVQNGVEMMLNDKEYERNTPSQPFDQMIVKLDDSLCTCCGENLETAHISGDFECYECKKFFLLKSSLERHIKTIHQGDSHKCPQCGARCPDKGTLARHMYTHTGLKPYSCPVCKQEFSRKYHLVRHNMQTGCDGKEKPIFPCQVCGREFNRKDNLREHLRAHAGQTKRKKLFSCDFCGMEFCGTNLLQIHKKTHTGEKHYVCDFCPKRFPTSGAMKKHRRTHTGERPYECDTCHKRFAAKETLNRHVRIHTGYKPHCCNYCGKRFIQSSQLRSHLFYHTGQNVLQQNEAFVCELCGKKFNRRARLNEHVKYVHLGAKPFECDHCSKTFIRKEDLNRHLIIHSGIKAHQCPICSKSFAMKSSLKVHLLTHTKEPPRSCDECGRAFIRQDCLLRHMRNKHRDMLEEIRSEAEKKKLQQQLLQVAAEASIVEGLEDRAELDEKGLTDAVRELLTLLVDEATLRGLGWPEAGVEALLEAVIRRCGHEPASLSIPHHERLRHNIKLLFTVVIDDSAVKALLNNQSVDEVILHVLRLAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -