Clec000672.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cimex lectularius
Gene Symbol
-
Assembly
GCA_000648675.3
Location
NW:2729794-2734488[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 9.9e-06 0.00061 19.5 0.2 2 23 20 41 19 41 0.97
2 21 0.00061 0.038 13.9 6.6 1 23 47 69 47 69 0.97
3 21 0.00015 0.0094 15.8 1.5 1 23 75 97 75 97 0.94
4 21 6e-06 0.00037 20.2 4.6 2 23 104 125 103 125 0.97
5 21 0.00015 0.0095 15.7 8.1 1 23 131 153 131 153 0.98
6 21 1e-05 0.00062 19.5 1.6 1 23 159 181 159 181 0.98
7 21 1.2e-06 7.3e-05 22.4 2.0 1 23 187 209 187 209 0.98
8 21 0.00071 0.044 13.6 2.2 1 21 215 235 215 236 0.96
9 21 0.00026 0.016 15.0 4.9 1 23 304 326 304 326 0.98
10 21 0.00031 0.019 14.8 2.1 1 23 332 354 332 354 0.98
11 21 1.8e-05 0.0011 18.7 2.5 1 23 360 382 360 382 0.99
12 21 0.00048 0.03 14.2 2.8 1 23 388 410 388 410 0.97
13 21 3.3e-05 0.002 17.9 1.5 1 23 416 438 416 438 0.98
14 21 3.7e-05 0.0023 17.7 4.3 1 23 444 466 444 466 0.98
15 21 3.8e-05 0.0024 17.6 2.9 1 23 472 494 472 494 0.96
16 21 7e-05 0.0044 16.8 4.5 1 23 500 522 500 522 0.97
17 21 0.00089 0.055 13.3 3.7 1 23 528 550 528 550 0.97
18 21 1.3e-05 0.00082 19.1 3.4 1 23 556 578 556 578 0.97
19 21 7.5e-06 0.00047 19.9 1.3 1 23 584 606 584 606 0.99
20 21 8.6e-05 0.0053 16.5 8.9 1 23 612 634 612 634 0.98
21 21 4.7e-05 0.0029 17.4 6.2 1 23 640 662 640 662 0.98

Sequence Information

Coding Sequence
ATGGAGCCTGAGAGCGGTGGGAgcgttgagaagaaaaattccaAGGCGAAGCTACTCCCCTGCCCAGAATGCGATTTCAAGAGCAAGAGCAAGTGGTCGCTGACAGCGCACATCCGCACGCACACGGGTGAGAGGCCATTTGCGTGCACGCTCTGCAGTTACAGGTGCACGCTGAAGAGCCACTTGAAGAAGCACATGATGAGCCATACAGGCGAGAAGCCATACAGCTGCGACTTGTGTGACTACCGTTGCTCGAGCCAGGGCGACCTGAGAAGGCACAGCGTCATCCACACTGGCGAGAAGCAGATCTCATGTAGCCTTTGCGATTACAGGTGTTCGCAGCAGAGCCACCTCAAGCGTCACATGATGGTCCACATGGGCGAGAAGCCATTCGAGTGCACACACTGTGACTACAAGTGTTCGCAGCACTACAACCTCAAAGTCCACCTGCTCACGCACACGGGCGAGAAGCCATACTCTTGCGGCCTCTGCGACTACAGGTGCTCGCAGCAGAGCTCGCTCAGGATGCACATGATCGTACACACAGGGGAGAAACCATACGCTTGTGACCTGTGCGACTACAAGTGCCCGAGGCAGAGCGACCTAAGAAAGCACATGATGACGCACACAGGTGAAAAGCCATATTCGTGCTCGTTCTGCCCGTACAGGTGCAGCGTACCAAGCAGGCTCAAAAGGCACATGAAAAGCTGCACAAAGAAGACAAACCTTAAAAGGCCATGGCGATGTAGATGTAGATTTGAAGGGCGTCGGATGGATGTAGAAGGGATCGCCATGGAGCCACACTGCAGCGCCGAGACGCCGTCTAAGCCGTTGTCGTGCGAGGAGAGCGGCGGTTCAGATGCGGAGCCCAGACCAACCGACGTCCACAAGCCTAATGGCATGCTCGCATATGAGTGCAGCCTGTGCGACTACAAATGCAGCCAGAAGACGACTTTCAAATCACACATGTTATCGCACATAGGCGGTAAGCCGTTTACATGTGGCCTCTGCGACTTTCGCTGTGCCCAACAGAACAGCCTACGTTCGCATATGACAGTTCATTCGGGCGAGAAGCCGTACACGTGCCGGCTTTGTGATTACAGATCGACATACCAGAACGACCTGAAAAGGCACATGATGACTCACACCGGCGAGAAGCCGTATGCTTGCGGATTCTGCGACTACCGATGTTCCCACCCCGGATATTTAAAGACACATGTCATGATGCACACGGGTGAGAAGCCGTTCTCCTGCACGCTCTGTGAATACAAGACAACACGCCAGggacttttgaaaaatcacaTGATGAGCCATACGGGGGAAAGGCCATACTCGTGCTCGTACTGTGAATACAGAAGCTCGCATAAAAGCTACCTCAAGACGCACATGATGATACATACAGGGGAGAAACCGCATTGTTGCAGCCTCTGCGGATACAGCACAACACGACCAGCGGATCTTAGAAGCCACATGATGAACCACACGGGCGAGAAACCATTCGCGTGCACTTTCTGCGATTATAAATGCAACAACCAGAGCTACCTCAAGTCTCATATGATGTCGCATACAGGGGAGAAGCCGTACGCGTGCACCCTGTGCGATTATAGGTGCACCCGCCTTGGACATTTAAGGGGACACATGACAAACCATACGGGTGAGAAACCATTCGCGTGTACGTACTGCGATTACAGGTGCGCGCAGCAGAGCTACCTCAAAACACACCTGATGACGCATACAGGGGAGAAGCCGTACTCATGCAGCTTCTGCGAGTATAGGTCGGCGAGGCAGGACGACCTGAGGCGGCACATGATGACGCACACGGGCGAGAAGCCGTACGCGTGCACAGTCTGCGACTACACCTGCTACCACAAGTCTCACCTCAAGCGTCACATGTTCACACACACTCGTGAAAAACCTTTTTCGTGTACGTCGTGCAGTTATAGGTGCTCGCGCAAGTCCCAGCTCACGAGGCACATGTCGACGCACAATATTGTACTTTGCGaatga
Protein Sequence
MEPESGGSVEKKNSKAKLLPCPECDFKSKSKWSLTAHIRTHTGERPFACTLCSYRCTLKSHLKKHMMSHTGEKPYSCDLCDYRCSSQGDLRRHSVIHTGEKQISCSLCDYRCSQQSHLKRHMMVHMGEKPFECTHCDYKCSQHYNLKVHLLTHTGEKPYSCGLCDYRCSQQSSLRMHMIVHTGEKPYACDLCDYKCPRQSDLRKHMMTHTGEKPYSCSFCPYRCSVPSRLKRHMKSCTKKTNLKRPWRCRCRFEGRRMDVEGIAMEPHCSAETPSKPLSCEESGGSDAEPRPTDVHKPNGMLAYECSLCDYKCSQKTTFKSHMLSHIGGKPFTCGLCDFRCAQQNSLRSHMTVHSGEKPYTCRLCDYRSTYQNDLKRHMMTHTGEKPYACGFCDYRCSHPGYLKTHVMMHTGEKPFSCTLCEYKTTRQGLLKNHMMSHTGERPYSCSYCEYRSSHKSYLKTHMMIHTGEKPHCCSLCGYSTTRPADLRSHMMNHTGEKPFACTFCDYKCNNQSYLKSHMMSHTGEKPYACTLCDYRCTRLGHLRGHMTNHTGEKPFACTYCDYRCAQQSYLKTHLMTHTGEKPYSCSFCEYRSARQDDLRRHMMTHTGEKPYACTVCDYTCYHKSHLKRHMFTHTREKPFSCTSCSYRCSRKSQLTRHMSTHNIVLCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-