Clec001863.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cimex lectularius
Gene Symbol
-
Assembly
GCA_000648675.3
Location
NW:1170973-1178131[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 34 6.1e-05 0.0038 17.0 3.3 1 23 37 59 37 59 0.95
2 34 5.2e-06 0.00032 20.4 0.2 1 23 65 87 65 87 0.98
3 34 0.006 0.38 10.7 5.6 1 23 93 115 93 115 0.98
4 34 8e-05 0.005 16.6 3.8 1 23 121 143 121 143 0.98
5 34 0.00023 0.014 15.2 6.3 1 23 149 171 149 171 0.98
6 34 0.0013 0.078 12.9 7.1 1 23 177 199 177 199 0.98
7 34 9.8e-05 0.0061 16.4 6.5 1 23 205 227 205 227 0.99
8 34 0.023 1.4 8.9 2.4 1 23 233 255 233 255 0.97
9 34 0.00069 0.043 13.7 3.8 1 23 261 283 261 283 0.98
10 34 0.00093 0.058 13.3 2.3 1 23 289 311 289 311 0.97
11 34 0.0039 0.24 11.3 3.0 1 23 317 340 317 340 0.97
12 34 0.12 7.4 6.6 2.9 3 23 348 368 347 368 0.98
13 34 0.9 56 3.9 1.5 1 23 374 396 374 396 0.96
14 34 5.4e-05 0.0033 17.2 0.3 1 23 403 425 403 425 0.97
15 34 0.00034 0.021 14.6 3.7 1 23 431 453 431 453 0.97
16 34 0.00023 0.014 15.2 0.9 1 23 459 481 459 481 0.98
17 34 0.0001 0.0062 16.3 1.7 3 23 489 509 487 509 0.98
18 34 5.9e-05 0.0036 17.1 0.8 1 23 515 537 515 537 0.99
19 34 2.1e-05 0.0013 18.4 0.4 1 23 543 565 543 565 0.97
20 34 1e-05 0.00062 19.5 1.7 1 23 571 593 571 593 0.99
21 34 8.4e-05 0.0052 16.6 1.8 1 23 599 621 599 621 0.97
22 34 0.0037 0.23 11.4 0.2 1 23 627 649 627 649 0.97
23 34 2.6e-05 0.0016 18.2 3.0 1 23 655 677 655 677 0.98
24 34 0.00016 0.01 15.7 3.1 1 23 683 705 683 705 0.96
25 34 0.0005 0.031 14.1 4.2 1 23 711 733 711 733 0.97
26 34 0.00027 0.017 14.9 2.1 1 23 739 761 739 761 0.99
27 34 0.00078 0.049 13.5 1.4 1 23 767 789 767 789 0.99
28 34 0.00014 0.0085 15.9 1.4 1 23 795 817 795 817 0.96
29 34 0.042 2.6 8.1 1.2 1 23 823 846 823 846 0.94
30 34 0.0044 0.27 11.2 2.7 1 20 852 871 852 874 0.93
31 34 1.5e-05 0.00096 18.9 1.3 1 23 880 902 880 902 0.99
32 34 0.0012 0.071 13.0 1.7 1 23 907 929 907 929 0.95
33 34 0.25 15 5.7 1.1 2 23 934 955 933 955 0.96
34 34 0.016 0.99 9.4 0.9 1 23 961 984 961 984 0.96

Sequence Information

Coding Sequence
ATGACATCTGCAGAATCAAATTTGTCTATTGGTTCAAATTGTGAATTCAGTGATGTAGATtccataaattgtaaaaaacaaaatcaatttgatgTAGAAGAAAAGGTATTTTTGTGTAACGATTGTGATTATAAATGTACATCTTCTCAATCTCTAAAAGTTCATATGATGAGGCATACCGGTGAAAAACCTTATGTCTGTACTGAGTGTGATTATGCTAGTATCACTAGTAGTTCTTTGAAAATTCACATGATGAGACATACCGGGGAAAAACCATATAAGTGTAAATTGTGCAGTTATAAGTGCAGAACATCACAGTCTCtaaaaatccataaaatgtTGCATACTGGTGAAAAACCATTTCAATGTACATTGTGTGATTACAGTTGTTCCAGGACTCAACTTTTAAAGAACCACATGTTATCACATTCtgaagaaaaacctttttcttgTGAGCATTGTGACTACAAATGTAAAACCAACAAggcattaaaaattcatatgtaTACACACAACGGAATAAAACCTTACGTCTGTCATGATTGCAGTTATCGTTGTACATCTTCCCAAAGTTTAAAAACACATAGAATGAAGCATACTGGAGAAAAGCCTTATACATGCTCATATTGTGAATATAGATGTACAACTTCGCATTCACTTAAAACCCATATGATGGTACATACCGGTGAAAAACCTCATGTGTGCATGTATTGTGATTACAGAAGTATATCATCTCAATATATGAAAACACACATTTTGAGACATACAGGAGAAAAGCCGTTTTCATGTTTGCAGTGTAATTATAGATGCATTTCTTCCCAGTCTTTACGCAGTCATATGATGACCCATACAGATGAGAAACGTTTTGCATGCACTTTATGCGATTACAAATGTAAAGTTGCTCAATCTTTAAAAACCCATTTGATGACGCATACAGGTGAAAAGCCTTATTCATGTTCGGAATGTGACTACAAATGCATATCAGCGCAAGGTTTGAAAAgccataaaaaatcaaaacatgttGATAGAAAACCATTGTTATGCAGCAAATGTCCTTATGCATGTACAAGTCAACTAAGAATGAAGTCCCACATGTTGAAGCACACCGGAACAAAGCCATTTGTCTGTTCTCAATGTGATTTcaaaaccatgtttataaaatcATGGCAAAAACATACCATGCTTCATAAAAATGGGGAGAAACCATATGCTTGTACTGAGTGTGATTACACTAGTGCAACAAGATATCAACTTCAATCGCACTTATTAGTACATTCTAATCATAAACCTTTTTCGTGCCCTCTCTGTGAATATAAATGCAAAACTAGCCATTCTTTGAAAATTCACATGGTTGTGCATACCGGTGAAAAGCCTTATAACTGTTCATACTGTGATTACCGAGGAACAACTTCTCAGGCTTTAAAAATTCACACAATGACACACACAGGAGAAAAACCTTATGGTTGTAATGTATGCAGCTACAGAACTAGGTCATCCAACTCCCTCAAATCACACATGAGAACTCATACAGGAGAGAAGCCTTATACCTGTACTGAATGTAGTTACCGAACTTCTACAGCACAGGGATTAAAGTCTCACATAATGACTCACACAGGGGAAAAACCCTATGCCTGTGCAGAATGTGGCAACCGTTTTACAACTTCAAATTCtcttaaaattcatattttcaccCATACTGGAGAAAAACCTTTCACTTGTGATGAATGTGATTACAAGACAACATCTTCACAATCTTTAAAAACTCACATGCTGACCCACACCGGAGAAAAACCTTTTGCTTGCACAGAATGTGACTATAGATGTGCAGCATCTCAAGCTTTAAAGAGACATATGAGGAAACACACAGGAGAAAAACCGTTTGCTTGCTCAGAATGTGAGTACCGGGGAACAAAtgcacaatatttaaaaattcacagaATGATTCATACAGGTGAAAAGCCTTATGCTTGCCAGGAATGTAATTATAGATGTTCTACTTCTTATACACTAAAAAAGCATATAATGATACACACAGGAGAAAAGCCTTTCCTTTGTTCTGAATGTGATTACTCATGCACTTCATCTCAATCGCTGAAAATTCATCGAATGACTCATACAGGAGAAAAGCCGTTTTCATGTACAAAATGTACTTATACATGTACAACTTCCCAAAGTTTGAAAAGTCATATGGGTATTCATTCTGACGAAAAACCGTATGTCTGTTTGGAATGTGGCTATAAATGTAGATTACTGAAAAGTCTGAAAGTTCATATAAAAACCCACAAGGGAGAAAAACCATATACTTGTGAAGAGTGTGACTACACATGTGCTGTTTCTTATGTTATGAAAATGCATATGATGACTCATACTGGAGAAAAACCTCATGCTTGCCCTAAATGTGATTATAAAACCTCTGTCAGATACTCGTTGAAATTACATATGATGATACATACAGGTGAAAAGCCGTATGCTTGTACTGAATGTGATTATAAAAGCAGATTTCCACAATCCATAAGAAGacacaaatcaataaaacacCCTGAGTTAAAGCCTTTTATGTGTGTTGAGTGTGGTTATAAATGTTCTTATGCCCATGCATTGAAAAGGCATTTGTGGTCTCATTCGTCATATAAACCTTACTCATGTACTGAATGCGGTTACACATGTTCCATAGCTAAAAGTTTAATTCGTCATATTCAGACTCAtgatattgataattatttatgtacagaGTGTGATTTTGAAGGGAAATCTAAGGAACATTTAAAACAACACATAAAAGAACATAACAATTTTCTCTCCTGCGCTGTATGTGATTTTAAAAGTTCacgaaaatttattatgaaaaaacatatgttatcaCACAAACTTGACAATCCATTTATGTGTATGGAATGTGATTACCAGTCATTTGAAAAAGAGAGTCTAAAGAACCATTTAAAAAGTGTTCATCCAAGGGAAAAATCAATTTCTTGTGTTTTTGGTGACACACAACCCTCTTCAACGGAGAAAAATTTACCAGAGCATTCAGATCAGATTACATAA
Protein Sequence
MTSAESNLSIGSNCEFSDVDSINCKKQNQFDVEEKVFLCNDCDYKCTSSQSLKVHMMRHTGEKPYVCTECDYASITSSSLKIHMMRHTGEKPYKCKLCSYKCRTSQSLKIHKMLHTGEKPFQCTLCDYSCSRTQLLKNHMLSHSEEKPFSCEHCDYKCKTNKALKIHMYTHNGIKPYVCHDCSYRCTSSQSLKTHRMKHTGEKPYTCSYCEYRCTTSHSLKTHMMVHTGEKPHVCMYCDYRSISSQYMKTHILRHTGEKPFSCLQCNYRCISSQSLRSHMMTHTDEKRFACTLCDYKCKVAQSLKTHLMTHTGEKPYSCSECDYKCISAQGLKSHKKSKHVDRKPLLCSKCPYACTSQLRMKSHMLKHTGTKPFVCSQCDFKTMFIKSWQKHTMLHKNGEKPYACTECDYTSATRYQLQSHLLVHSNHKPFSCPLCEYKCKTSHSLKIHMVVHTGEKPYNCSYCDYRGTTSQALKIHTMTHTGEKPYGCNVCSYRTRSSNSLKSHMRTHTGEKPYTCTECSYRTSTAQGLKSHIMTHTGEKPYACAECGNRFTTSNSLKIHIFTHTGEKPFTCDECDYKTTSSQSLKTHMLTHTGEKPFACTECDYRCAASQALKRHMRKHTGEKPFACSECEYRGTNAQYLKIHRMIHTGEKPYACQECNYRCSTSYTLKKHIMIHTGEKPFLCSECDYSCTSSQSLKIHRMTHTGEKPFSCTKCTYTCTTSQSLKSHMGIHSDEKPYVCLECGYKCRLLKSLKVHIKTHKGEKPYTCEECDYTCAVSYVMKMHMMTHTGEKPHACPKCDYKTSVRYSLKLHMMIHTGEKPYACTECDYKSRFPQSIRRHKSIKHPELKPFMCVECGYKCSYAHALKRHLWSHSSYKPYSCTECGYTCSIAKSLIRHIQTHDIDNYLCTECDFEGKSKEHLKQHIKEHNNFLSCAVCDFKSSRKFIMKKHMLSHKLDNPFMCMECDYQSFEKESLKNHLKSVHPREKSISCVFGDTQPSSTEKNLPEHSDQIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-