Basic Information

Gene Symbol
Kdm5
Assembly
GCA_000648675.3
Location
NW:230471-256533[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 6.9e-25 9.9e-22 76.5 0.0 3 89 95 177 93 177 0.95
2 2 1.2 1.7e+03 -1.1 0.2 4 54 1300 1349 1298 1372 0.76

Sequence Information

Coding Sequence
ATGGAGAGGAAAGCCTCGAAATCCGGGCCCCAGACGGACGTCCTCGACAGCTTCGAGTTTGTCATGCCTCCGGAAGCGCCTTTCTTCCAGCCGACGAGAGACGAATTCAAAGATCCTTTGGCCTTCATCGATAAAATAAGGCCGATCGCCGAAACGTCTGGCATCTGTCGGATAAAACCTCCTCAGgATTGGCAACCACCATTTGCAGTGGATataggaaaatttttatttactcctAGAGTCCAACGCCTAAATGAACTTGAAgCTAAAACCAGAATACGATTGAACTTCCTTGATCAAATAGCTAAATTTTGGGAACTTCAAGGTACACCTTTGAAAATTCCAATGGTCGAAAGGAAAATTCTTGATCTCTATACATTacatcaaattgtaaaaaatgaagGAGGATTTGCTACTGTAACCAAACAAAAACTTTGGGGTAAGGTTGCAATACGAATGGGAATGCCCAAGGGTAGAGGCATTTCTTCGGTATTAAAGGGTCATTATGAAAAGATTTTAAGCCCATTTGACATATTTGAAGAGACTAAAGTAAGCAAGGACAAAATAGATGAGCATTTAAAAGACAGTTTGACTGGTagcaaaaatgaattaaaacgtCTTCAGATATATGGCGCAGGGCCCAAAATGGCAGGATTTAATATTGAAacagataaaaaagataaatcaaagaAAGCCACTTACGATCAACAAGATCCTcttgcaaaatatatttgccAAGTGTGTGAACGAGGAGACGAAGAGGAAACAATGCTTTTATGTGATGGATGTGACGACAGTTACCACACTTTCTGCCTAGTTCCACCACTCACTGAGATTCCAAAAGgTGATTGGCGTTGTCCAAAATGCGTTGCTGAAGAAGTCAGTAAACCTATGGATCCATTTGGTTTTGAACAAGCTCAGCGAGAATATACCTTGCAACAATTTGGAGAAATGGCtgatatttttaaagcaaactATTTTAATATGCCAGTACATagaGTACCACTCCCATTAGTTGAAAAGGAATTCTGGAGGATTGTTTCTTCCATTGATGAAGATGTTACTGTCGAGTATGGTGCTGATCTTCACACAGTGGATCACGGATCAGGTTTCCCCACAAAGGATTCCCACAGTTCTGAAATGgagAATCCAGACATATTACAGTACATAGAGTCACCatggaatttaaataatatgccAGTATTACAAGGATCGGTACTCAGTCACATTTCAGCAAATATTTCCGGGATGAAAGTACCATGGATGTATGTTGGAATGTGCTTTGCAACCTTTTGTTGGCACAATGAGGATCATTGGAGCTATTCCATTAACTATTTGCattgGGGAGAACCAAAGACATGGTATGGTGTACCAGGTAGTTATGCAGAACAATTTGAAGCAACAATGAAACAAGTGGCTCCAGAATTATTTCAAACTCAACCAGATCTCCTACATCAGCTTACTACCATTATGAATCCGAATGTATTAATGAAAGcagGTGTTCCTGTGTACCGCACAGACCAAGAAGCTGGTGAATTTGTAATTACATTTCCTCGAGCTTATCATGCCGGTTTCAATCAAGGATACAATTTTGCAGAAGCTGTTAACTTTGCACCTGCTGATTGGctATCAATGGGTCGAGAATGTATTACACGTTATGCTTCTTTACACCGCTTCTGTGTATTTTCTCATGATGAACTTGTTTGCAAAATAGCTTTGAATGCATCATCGATAGATCCTAAAATTGCAGCTGCAACTTATGATGATATGTTGAAAATGGTAGAGATGGAGAAAAATCtaagaaaaaagttattggGTTGGGGAGTTTGTGAAGCAGAACGCGAAGCTTATGAACTTGTACCTGATGATGGAAGGCAATGTTATTGTTGTAAAACAACATGCTTCCTTTCTGCTGTCACTTGTAAATGCTCGACAGATAAACTGGTTTGCCTTCATCATTTTGATTCATTGTGCGATTGTCCGCCCAAAAACCATATTTTGAGGTATAGGTATACAATGGATGAGCTGCCTGCAATgctgcaaaaattaaaagagaaagcTGAAATATTCGAAGTTTggataaaaaaagcaaaacggATTTTAAACCATGAAATGTGTCGATCCATAGatttaAACGGGTTGAAAGCACTATTGACAGAAGCAAAAGATAGGCAATTCCCGGATTCAGAATTATTGCACTCTCTCATTAATGCTGTTCAAGAAGcagaaaaatgttcaaatattgCTCAacgtttaaattcaaataaagaaagagtAAGGACTAGAATTTGTCCTGAAAAAAAGATGACAGTGGACGAgctaactttatttataaaagaagtcAATAATTTAGTGTGCAAAATTGAACAAGGAGACAGTTTAAACTCTTGGCTGCACCAGGCTTTGCACTTCCAAAAACATGCATCTCTACTATTAAGTATGGATAGTGTATTATTGGAACAATTGAAAACAGCTAAGCAAGAGGGAATTTCATTAAATCTTGAATTTGAAGAACTCGATCTCATAAACAAGgaAATAGAAATAAGAAGTTGGATAGAAAAAGCAGATGCAATGTTGGTTTTTGACCAAGATACTGAAACAAGTGATTTAAGCGACATGATCAAGAACGGCATtagtttgttaaaaacaaacatcCATAGTATGAAACATCAACAAACTTTGGAGGACTGCATATCAAAGTTGCAAATTTTGCTACGTTTAGCAGAAAAATGGGAATCAAAAGCAAAACATCTATTAAATGCAAAatCTGAAGATAAACTTTATGAGTTTGAAAATCACTTGATAGATGGAAAGTATATTCCAGTGAAATTGTATTCACATAGTAAATTAGCAAATGCTATTGCACTTACAAAAGCTTGGTACAAAGACGTTGAAAGTATTTGTgaagTGAATATGATTTCTAATAAGAATGAATTGCAACATTTAATAGAGCGAGCCGCTTCCTTAcccataaatattaatgttgataaattaaaaaataatttggtattCAGGGATAAGTGGATCGCAGAAGTTTGTAAAGCTTTCTTAAAAAATGGTGATCAAGAGTTAATTGAAGTATTGTTTCCTCGTATCAGAAATTTATTGCAGGATGAGAAACAATTCACTACTTCTTGGAGTAAAGATTTCTCTCTTTGTGATATTCCATCTTTGAAAACTGAGTGGTTTACCTCTTTTTATAAGaaagcaACTGCTAGAgaactttcaaatttaaagtctttgcgaattaaaaataaacaagttatgATGAACAGCAAAGACGTTTCGCggcattgtttttgtaaaagtaagaaaaaaggtGCTTTGGTCAAATGTATTCTATGCTCTATCACAAGTCATGAAATATGTGTATCAAAAAATTGGAAGTGCAAAGATAATATGAAATCCAATTACCTAATAATGAACTACATTTGTCAAGATTGCGAGAGATCTAAGAGACCTCCTTTGAATGTTATAAAATCCCTTATCGCCGATTTACAAAACACGAACATAAAATTTCCAGAAGGTGAAGCTTTGAAGCTACTTATGGAAAGGATAAAAGCTTATAAGacCAAAGTTGAGAAAGTATTAcagaataaaaacttaatagaaGTTAAACCGTTTGGAGACcataggaaaaaaagaaaaattaaagaagagaCAGATGATGTATGTAAGgAGGATCTCAAATTACCAAAagaaatttcaaccaataaaaaTTGTGATGAAACAAGTGATACTACAGGAGTAAACCAGGAAGAGGATGAACCTCCCAAAACTTTTTCCCattcagttaatattttaaaatccggCTTAAAATTGTCCAAAGATGATTTGTCTGTAATCAAGTCACTTTTACACGAGGGGAGTGCTATCGAAGCTTCTATAATACACACATCatttttactaaaattgttaaaagTTGCAAAGCAGAAACCTATTGAGAAAAGGAAACCCAACCAAGATAGcgtattaaatgtatataaaaaagatcaaaatatgaaaacaaatggAAACCTTAAAAAGGTGGATTACAAACAGAGAAAGAATAAAGGTATATTAAGTCTTGTAGATAATAAAAACACAGTTAGATTAAATTCGCACGGCAATTCTTCGAAATCGAATCTTACGAAATCGTCTGTTACACTGATGAGCAAAGTGAAAACAAAAGATGCGAAAGGCCTTCGGAATGAACGGAGGCTAAACAAACATTCACAAGAAGAAAGTTTATCGGCAGATGAAAATACTtgtgataatttattaaaaccatcAACCGAACCGTTAATCAAAGATAAACCAAAAAGGGATAAGCGTCcacaaaaaacaagcaaaaaaggTTCACATGAAGGAGACAACACACAGGAAgatggtggtggtggtggtgatgatgatgaagattGTGCGTTACCAAATTGTCTTCGTCCTGTAGGAGTCAAAGTTGATTGGGTGCAATGTGATCAATGTCTTTGCTGGTATCATTTGCTgtgcataaaattaaaaaaaagtgatgttAAAGAGGaccaagattttttttgccaCGAATGCAAGAAAAATTCCCGCTTTCCAAGGAAATGTaaaaaataa
Protein Sequence
MERKASKSGPQTDVLDSFEFVMPPEAPFFQPTRDEFKDPLAFIDKIRPIAETSGICRIKPPQDWQPPFAVDIGKFLFTPRVQRLNELEAKTRIRLNFLDQIAKFWELQGTPLKIPMVERKILDLYTLHQIVKNEGGFATVTKQKLWGKVAIRMGMPKGRGISSVLKGHYEKILSPFDIFEETKVSKDKIDEHLKDSLTGSKNELKRLQIYGAGPKMAGFNIETDKKDKSKKATYDQQDPLAKYICQVCERGDEEETMLLCDGCDDSYHTFCLVPPLTEIPKGDWRCPKCVAEEVSKPMDPFGFEQAQREYTLQQFGEMADIFKANYFNMPVHRVPLPLVEKEFWRIVSSIDEDVTVEYGADLHTVDHGSGFPTKDSHSSEMENPDILQYIESPWNLNNMPVLQGSVLSHISANISGMKVPWMYVGMCFATFCWHNEDHWSYSINYLHWGEPKTWYGVPGSYAEQFEATMKQVAPELFQTQPDLLHQLTTIMNPNVLMKAGVPVYRTDQEAGEFVITFPRAYHAGFNQGYNFAEAVNFAPADWLSMGRECITRYASLHRFCVFSHDELVCKIALNASSIDPKIAAATYDDMLKMVEMEKNLRKKLLGWGVCEAEREAYELVPDDGRQCYCCKTTCFLSAVTCKCSTDKLVCLHHFDSLCDCPPKNHILRYRYTMDELPAMLQKLKEKAEIFEVWIKKAKRILNHEMCRSIDLNGLKALLTEAKDRQFPDSELLHSLINAVQEAEKCSNIAQRLNSNKERVRTRICPEKKMTVDELTLFIKEVNNLVCKIEQGDSLNSWLHQALHFQKHASLLLSMDSVLLEQLKTAKQEGISLNLEFEELDLINKEIEIRSWIEKADAMLVFDQDTETSDLSDMIKNGISLLKTNIHSMKHQQTLEDCISKLQILLRLAEKWESKAKHLLNAKSEDKLYEFENHLIDGKYIPVKLYSHSKLANAIALTKAWYKDVESICEVNMISNKNELQHLIERAASLPININVDKLKNNLVFRDKWIAEVCKAFLKNGDQELIEVLFPRIRNLLQDEKQFTTSWSKDFSLCDIPSLKTEWFTSFYKKATARELSNLKSLRIKNKQVMMNSKDVSRHCFCKSKKKGALVKCILCSITSHEICVSKNWKCKDNMKSNYLIMNYICQDCERSKRPPLNVIKSLIADLQNTNIKFPEGEALKLLMERIKAYKTKVEKVLQNKNLIEVKPFGDHRKKRKIKEETDDVCKEDLKLPKEISTNKNCDETSDTTGVNQEEDEPPKTFSHSVNILKSGLKLSKDDLSVIKSLLHEGSAIEASIIHTSFLLKLLKVAKQKPIEKRKPNQDSVLNVYKKDQNMKTNGNLKKVDYKQRKNKGILSLVDNKNTVRLNSHGNSSKSNLTKSSVTLMSKVKTKDAKGLRNERRLNKHSQEESLSADENTCDNLLKPSTEPLIKDKPKRDKRPQKTSKKGSHEGDNTQEDGGGGGDDDEDCALPNCLRPVGVKVDWVQCDQCLCWYHLLCIKLKKSDVKEDQDFFCHECKKNSRFPRKCKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-