Basic Information

Insect: Chymomyza procnemis
Gene Symbol: -
Assembly: GCA_035046065.1
Location: JAWNOJ010000026.1:61436821-61439010[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00044 0.032 14.7 2.7 1 23 397 419 397 419 0.98

2 7 7.6e-05 0.0054 17.1 0.2 1 23 425 448 425 448 0.98

3 7 0.64 45 4.8 1.3 1 23 454 477 454 477 0.90

4 7 0.00034 0.025 15.1 1.4 1 23 503 525 503 525 0.97

5 7 0.00041 0.029 14.8 1.5 1 23 531 553 531 553 0.97

6 7 2.2e-05 0.0016 18.8 2.0 1 23 558 581 558 581 0.96

7 7 0.00099 0.071 13.6 1.7 1 23 587 611 587 611 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00044	0.032	14.7	2.7	1	23	397	419	397	419	0.98
2	7	7.6e-05	0.0054	17.1	0.2	1	23	425	448	425	448	0.98
3	7	0.64	45	4.8	1.3	1	23	454	477	454	477	0.90
4	7	0.00034	0.025	15.1	1.4	1	23	503	525	503	525	0.97
5	7	0.00041	0.029	14.8	1.5	1	23	531	553	531	553	0.97
6	7	2.2e-05	0.0016	18.8	2.0	1	23	558	581	558	581	0.96
7	7	0.00099	0.071	13.6	1.7	1	23	587	611	587	611	0.90

Sequence Information

Coding Sequence: atgaaatgcgcagtttttaattgcaaaaatgagCGTCGCAATATAAGTCCagttgaaaatgaagaaaacatttatttctttcgtTTTCCTAAAAAAGAAGAACTTTTAAAGCAATGGTTGTCGTTTTGCCGCACTGGCCCAGAAAACGCACAGAAAGGCGTTGTTTGCAGTAAACATTTTCGATCTGAAGATGTAGAAGGCATTTTACAGTGTGAAATGGGTTTACGTGGCAGACCCTATCTGAAAATAGGAGCCGTTCCATGCATAAACATAATAAGCCGCGAGCGTGCAAAACgaattgaaaaaagaaataataaaaaattggtgAAGGAGCTTCTAAAGAGCCCTAGTGTAAGTCCCATACCTGAACAGATTATGAATAATCCCTTTGACGAAGTGTCACTGGACCCGGAAAAAATCGAGGCTGATTTGAGCGATGAAGACCAAGCAAAGGCTGAAAGCGATGCTTTAGCGCTGTCATCgaACGCAActgttacaatattttatcCCAAAGAGGATAAAGTCAGGAATATCAACAAATGCCGCACTTGTGATCATTATTTTGTTGCCGATATAAACGCGAAGGATCTCTACGATCAGCAAAACGCAGATTTACTTGGCCACATTGAATTAATAACGGGTGTCAAGCTTATGCTTCAAGATGGCTTGCCAAGACACATTTGTTCTGGTTGTTCTTCTGACTTAAATAAAGCCATCGAATTTCGAGAAAGATGTATTAAATTGGAATCAGAGATTATATTACAGATGCCTTTAAAAAGATCACCAGTTGATATTAGTTTCtctgataacgaggaaaagtGGGATTATTCAGACACCGTTGCCAGGATCGCTGAAAATAGTAGCAGTTCCGACGAGGAGTACTGTCCTATTAGTTTTGGTACAAGCAAAACCGAAGAATCCAAAAAGGAATGCAAATCAAATCTAGATAAGGCGAATCTTAATATGAAAGAGGAAGGCTCGGACGGTCCTCCAACTTATGATCCTCTTCAGTTTCCAAATCTTTCTTTGGgagaaacaattttaacatGTTTGAAAAACCGACCAGCCGCAActgaaaaagataaaaagaaaaaacagaaGCGATGCCCTCAAAAAGTGAAAgatccaaaagaaaaaaaagaaaaaccattaCAAGGTCGCCGtatcagaaaaaataaacccgGCGTCTACGTTTGTGACCAGTGCGGAAAAATTTGTCGTTATAGAGCAAGTTTTGTGTTACATAAGAGACGGCATGCAGGCGATAAACCATATAAATGTAGCGAGTGCCCAAAAAGTTTCCTTGTTAACAACCTTTTGAGTATTCACATTCGAACTGTTCATAGGGGCGAAAAGCCTTTTCCTTGCCGTTACTGTCCAAGTTCATTCAGTGAGTATGGCGGCAGACGAGTCCATGAAATaCGATGTCATGGTGCACCGTCGCGCATAATATGTACCAGCAAAACAACAGATGGAGACAGCGGTGGTTCAAGAAGTAATGGTAACTTTCCTTGTCCACAGTGTCATAAGACTTATTTATCgcaaaatagcttaaaatggCATTTAAATTGGCACAACGGAATTTTTCCCTATCCATGTAAATTTTGTGACAAAGGATTTACAAGTCCGCACAGGGTCAAGGTACATGAGATGTCACACAAGCCGAAACCGCATGAGTGTGAAGAATGTCCAAAATGTTTCAGCACGACTATTTTGCTGGAAAGGCACAAACAGGTAGCGCATTCTGGACAACGTCCCTATAAttgCGATATTTGTAATACCAATTATGCGACCCAGGCACATTACCTAAGGCATAAAAAGAGTATAATGCACAAGCAAAATTTGGAAAAGCGTGCAAGTGCTGAAAATACGGAGGAGCCCACATAA
Protein Sequence: MKCAVFNCKNERRNISPVENEENIYFFRFPKKEELLKQWLSFCRTGPENAQKGVVCSKHFRSEDVEGILQCEMGLRGRPYLKIGAVPCINIISRERAKRIEKRNNKKLVKELLKSPSVSPIPEQIMNNPFDEVSLDPEKIEADLSDEDQAKAESDALALSSNATVTIFYPKEDKVRNINKCRTCDHYFVADINAKDLYDQQNADLLGHIELITGVKLMLQDGLPRHICSGCSSDLNKAIEFRERCIKLESEIILQMPLKRSPVDISFSDNEEKWDYSDTVARIAENSSSSDEEYCPISFGTSKTEESKKECKSNLDKANLNMKEEGSDGPPTYDPLQFPNLSLGETILTCLKNRPAATEKDKKKKQKRCPQKVKDPKEKKEKPLQGRRIRKNKPGVYVCDQCGKICRYRASFVLHKRRHAGDKPYKCSECPKSFLVNNLLSIHIRTVHRGEKPFPCRYCPSSFSEYGGRRVHEIRCHGAPSRIICTSKTTDGDSGGSRSNGNFPCPQCHKTYLSQNSLKWHLNWHNGIFPYPCKFCDKGFTSPHRVKVHEMSHKPKPHECEECPKCFSTTILLERHKQVAHSGQRPYNCDICNTNYATQAHYLRHKKSIMHKQNLEKRASAENTEEPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00339190;
90% Identity: iTF_00339190;
80% Identity: iTF_00339190;