Cpro007045.1
Basic Information
- Insect
- Chymomyza procnemis
- Gene Symbol
- -
- Assembly
- GCA_035046065.1
- Location
- JAWNOJ010000021.1:18762567-18765576[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.95 68 4.2 0.1 1 18 343 357 343 363 0.74 2 8 1.4 97 3.7 5.0 1 23 723 746 723 746 0.90 3 8 7.1e-05 0.005 17.2 3.0 1 23 775 797 775 797 0.97 4 8 2e-05 0.0014 18.9 4.7 1 23 803 825 803 825 0.97 5 8 3.7e-05 0.0026 18.1 0.9 1 23 831 853 831 853 0.98 6 8 0.0016 0.11 13.0 1.2 1 23 859 881 859 881 0.97 7 8 0.0027 0.19 12.3 0.0 2 23 888 909 887 909 0.96 8 8 0.004 0.29 11.7 1.2 1 21 915 935 915 936 0.95
Sequence Information
- Coding Sequence
- aTGGAGGCCGCAACGCGCGTTCAATGTGGCGTTGTCTACACTGGAAACTGGCATAGTGCTGGTGACCTGTATGCGGTGGAGTGTGCACTCTGTGAGGATCAGACACTTTGTAGTCTGACGGAATTTGCGCAGCATATGGATATTTGGCATAATGGTTGGCAGACACCTGATAGGGAACAGGCGGAGGATGAGCTGCTGCAGGAGGTGCTTGCTGAATCGCAAATAGACAGTGCAGGCAATGAGCTAAAGGAGCAGCTGGTGCAGCAGCTGAATGAGACCTGTGCAGCACAGCTGAACCCAGTACCACAGACGCCCAGCCTAAGTGCGCAGATCTGCTTTGGTTTGCATGATACACTACCCACGCCGGAGCAGTCTAAACTAACTGCAGCGCATGTTAGTCATCTTATAGACCTCTATCGCGACGAGCCACGCCTTTGGAATCAATCACATGAGGAATTTCGTGATGTAGAGCTTTGTCGTGCTAGCTGGCAGCGCATAACCAATGCTTGGAATGCGCATTGTGGTCGCAGGTTTAGCGTAACGGATGTACGCATACGCATCTCGACGCTGTGTCAGCGTTTTTTGAAACAACGAGAACGCTTAGAAGCCGAAGGCGGTGAACTGGACGAGGGCGCTAAATTCGTGCACTATGAACAGTTGAGCTTTCTATGCGAACAGCAGGAGCTGCTCAAGCGTCGTGAACATCTAGCGCTAGAGAATCACAAGCTTTTGGAAATCTACGAGCACTATCCAGTGCTGTGGCATAATGCGCATAAGCGTGTGCGTAGTGCGGAAACGTTGCACCACCGCGAAGAAGCAATACGCGGCATGCAGCTAGCCTTGCAGCTATGTGGTATTAACCTTTCCGCACTGGCTATGCAGCGGCGTTTGCAATCGCTGCGCAAATGCTACAGGCTGGAAAAGATACGCTACTTGCATAGCGTGGTGGAGGGCAAGCAGGCTGAGTTTATCAGCAGCTTTGAGCACTACGCGGCCATGGAGTTTCTGCATAAGCACATCGATCCATATGTGTGCGCCGCTTGTGGTAAGATATTTGAGAATCTGGTTAGCCATCAAATGCATGTACAGGGCAGCTGTCAAGCGGTTgtagcggcagcagcggcagctgaAACACAAGAGCAGCAAGAAGACTTCGAGACCACAGTGGGGGAGATAATGGCACAGCTTGAAAATGTCGGCGATGAGGCAACAGTTAGTATTGTGGTAATGACACAAACAAAGGCGCAGCCCACTAAGAGCAAGACGCCGGAAGCGACGACAACAAGTGACCTTGTTGTCACAGTACAGTGCGCAGAGTTTGCATATGAACTGCAGCTGCCAGCAGCTAAATCGGTAACCAGCAATACAGAGATACAAGCGGCTGACTCTACTTGTCCAGACGTGGAGGCATACGCAGACACTACAACACTGTTAAGTCTGGCAGAAGCCAGCAAAGCAGCAGATGAGGATGCTGGTCCAACGACGGACGTAAGCAGCAACATCGAGGAACAGAATTCAACACTTAAGGCAAGTGTGCGTCTGAGTGTGCCTCTAACCAACAAACTTATTGAGCTTTACAAGGAGCAAGTGTGTCTCTGGAATCCCAATCATTTAGACTATCATACACGCAGTCTGCGGCGTCAAGCCTGGCAGAGCATTGCACGACAACTAAGTGCCAAAGCCAGTCAACGTTACAGCTGGCAAATGCTGCATCGCAAGCTCACGGATTACACTAAATATTATAGACGTGAGCGGCAACGGCAACCCAATGGAGGCAGTAAATGGTGTTTCTTCAGAGCCTTTCGCTTTCTGGACGACGTGCTACCCATTAGTGGGGAACTGCAAAAGACGTTTCAACAGCGTGATAGCAATCTAAAAATCATTGAGATATATCAGGGGTATGAGCAGCTCTGGTGCACAGATCATCCGGATTATACAAAACGCAAGCAGCGGCTGCGTCATGTGGAATCATTATGCACGCGATTGCAGGAAGAATGCAATATACAAATCACCGTGGAACGCCTAAAGAATCGCATTATAGACTTTCGATGTCAATACCGGCAATGCAAGCGGGAGCGGCTGCTGGCACAGAAGCGTGGCGAGACTTGGCAGCCCAACTATGAGTATTACGAGGCGCTGCAATTTCTGGAGCAGCATGTTGCACCGTTTAACTGCGCGCATTGTACGGTTAGCTTTAAGAAACGATCCGATTATTTGTGTCACGAGCGCAATGTGCATGCCAACGCGGAGCGGCAGGACAACGAGGAGCTGCCGCTGGGCATGCGCACCAGGCGTCAACAGCGCAAGCCTAATATGTTGGAGCACATATGCCATATTTGTGGCATGAAATTTTCGCTGCGCAACAGTCTGCTGGCACATTTGCGTCGTCACCTAGGACAGCGTACACATCACTGCAACGAGTGTCCAAAGAAGTTCTTTAATTCCACTGCACTGCGCGTACATATGCGCAGTCATACCAAGGAGCAGCCCTATGTCTGTGAGCATTGCGCACGTGGTTTTGTCAATGCTAGCAAGCTGAATCAGCACGTGAAGCGACATCGCGGGCAGCGAGATTTTCCCTGCAGTCGCTGCGATAAGGCTTTCTATACGGCCCATGAGCGGGATCGTCATGTACGTGCGCATCTTAATATACGCGATAAAGTTTGTCCGTATTGTGAGCGTGCCTTTGTAGTGGGCTCCGCCTACTATGCGCATATGAATCTACATCGAGGCGACAAGCGCTACAGTTGCTCCTCTTGCTCGAAGAGATTTGCGCAATATGCGGGCTTGTACAAGCATAGAAAACGTTGTATGCCCACAGAATTGATGGAGGAGTAG
- Protein Sequence
- MEAATRVQCGVVYTGNWHSAGDLYAVECALCEDQTLCSLTEFAQHMDIWHNGWQTPDREQAEDELLQEVLAESQIDSAGNELKEQLVQQLNETCAAQLNPVPQTPSLSAQICFGLHDTLPTPEQSKLTAAHVSHLIDLYRDEPRLWNQSHEEFRDVELCRASWQRITNAWNAHCGRRFSVTDVRIRISTLCQRFLKQRERLEAEGGELDEGAKFVHYEQLSFLCEQQELLKRREHLALENHKLLEIYEHYPVLWHNAHKRVRSAETLHHREEAIRGMQLALQLCGINLSALAMQRRLQSLRKCYRLEKIRYLHSVVEGKQAEFISSFEHYAAMEFLHKHIDPYVCAACGKIFENLVSHQMHVQGSCQAVVAAAAAAETQEQQEDFETTVGEIMAQLENVGDEATVSIVVMTQTKAQPTKSKTPEATTTSDLVVTVQCAEFAYELQLPAAKSVTSNTEIQAADSTCPDVEAYADTTTLLSLAEASKAADEDAGPTTDVSSNIEEQNSTLKASVRLSVPLTNKLIELYKEQVCLWNPNHLDYHTRSLRRQAWQSIARQLSAKASQRYSWQMLHRKLTDYTKYYRRERQRQPNGGSKWCFFRAFRFLDDVLPISGELQKTFQQRDSNLKIIEIYQGYEQLWCTDHPDYTKRKQRLRHVESLCTRLQEECNIQITVERLKNRIIDFRCQYRQCKRERLLAQKRGETWQPNYEYYEALQFLEQHVAPFNCAHCTVSFKKRSDYLCHERNVHANAERQDNEELPLGMRTRRQQRKPNMLEHICHICGMKFSLRNSLLAHLRRHLGQRTHHCNECPKKFFNSTALRVHMRSHTKEQPYVCEHCARGFVNASKLNQHVKRHRGQRDFPCSRCDKAFYTAHERDRHVRAHLNIRDKVCPYCERAFVVGSAYYAHMNLHRGDKRYSCSSCSKRFAQYAGLYKHRKRCMPTELMEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00337866;
- 90% Identity
- -
- 80% Identity
- -