Cpro008625.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza procnemis
Gene Symbol
Tufm
Assembly
GCA_035046065.1
Location
JAWNOJ010000023.1:2470809-2482076[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 0.66 47 4.7 3.5 2 23 353 375 352 375 0.94
2 6 0.00044 0.032 14.7 0.3 1 23 382 405 382 405 0.97
3 6 3.3e-05 0.0023 18.3 1.4 1 23 410 432 410 432 0.98
4 6 2.6e-05 0.0019 18.6 0.2 1 23 438 461 438 461 0.91
5 6 7.9e-06 0.00056 20.2 1.3 1 23 467 489 467 489 0.99
6 6 0.00011 0.0078 16.6 3.4 3 23 497 517 496 517 0.97

Sequence Information

Coding Sequence
atgcgATGTTCATACTGTCTCACCGATATAGATATTGCAGAATGGGAGCAATTCGTGCTACACTTCCATGCGATACATAACTCTTTGGATTTAGATGAAAATAGTAAACAACTAGAACCTAGTTTAAACAGCAGTCATGACGAGGATTCCATTCAAGAGGAAGTGCTTGTTGATTGCAATGAGGTTAATATACAAGTAGAAAGTGAGCCATATGAAAACAGTGCCGAtgatatgcaaaatatgcaacagCTACATTCAGAGTCTGACATATTTGACTCTTTCCATGAACGAACTGCATCAGATTCAAGCGGGCTTGAAACAGAACCCGAATCTGAAACTCAACAACACGACGCAGAAGATGTTGAAAATAGCAGTTGGGAATCACCTGCATACAAGTTCAATCCCTCATTCTTTCGCCGGAATAAACAtatgacaaaatttattgaattatacAAAGCCCATAGCTGCCTATGGAGTCCTGAACATATTAACTATAAAGAGACAGCTGCCTGTACGATGGCGTATCAAAACTTTATAACCGATTTTGCTGCTGAAACTGGTGTATCgttcaataaacaaacattaaaagcaGCCATAAGAAAGTTGCACACGCAgtataatataattcaaacCCGTGTAATGAATGGCAGCCAAAAAACCAATTCCGTGGCGTTTTCATATTATACTAGTTGCCAATTTTTGAGGACATGTACAAGTGAAGGTGTTGAAtccaaaaaggaaaaaattcaaTTGGACTTTACATCAACAAATTGGCTTACAACAGagattattaaacaatattcaaaCTTTCCTCAACTGTATGATCACAATCACaaagaattttcaaatgttaatTCCCGAAAACAAGCTTATGAGACAATGGCAGCTGAAATTGATATACCTCATACAGATATAAATAGCGATGATGTATTTCTTGCCATTCAACACCTACGCCAGTGGTATTACAAGGGCTCCAAACATGCGATCTCTGAAGCGgagaaaagttatttaaaaagttgtcgGTTTTTACCGCCCAAAATGTTTAAGCAGAAGCTTACGTGCGAAATATGCCACAAGGCAACCTTTTCAGATCACGTACTCCAGGTTCACCTGCATAAAGTTCATAATATTGGAGAACTACCTTTCAGATGTTTACTGTGTGACCGCAGTTTTATAGGTCGTGGTGAAATGAGCACCCACATGCAGCGTGTTCACATTGGAAAAACCCACAAATGCACCTATTGTGATAGTACTTTTGCAGTCATCTCTGATCTGCGCTTACATATACGAACTCATACTGGTAGCAAGCCGTTTGTTTGCGAGCAGTGCGGCAAAGCTTTTCGACTTAGGTCTCAGCTTAAGCTACATGTTACGGCAATTCATACAAAAATCAGAGCATTTAAATGTACAATGTGTCCAAAGGATTTTATTAAGAAACGAGACCTTACagatcacataaaaagtcatTTGGGAATTCGCGATAAAATATGTGGTACTTGCGGCAAAGGATTCACCAATTGCCACTCACTTATAAGACACCGTCAGATACACGCAGAGGTTAAGAAATTTGCATCTATCACTCGACAAAAACGTACACAGAAGTTAAGTAGAGTACCACTATATTATCATGAGCTCTACAGTTTTTTGGGTCAGCTCGAATATGCTGGCAGTGATAGCGAAGAGGACAGCGAGGAGGATAAAATTAAGTATGGACTAAACTATAGACGAAAAGTCGGCAGCTTGCTGCTAAACTATCATCAAGCGTTAAAATGGAATGGCAATCGTAATTTCAGTCAAAATATTGCTCAAAAGTTACGTGACCGTGAACACTGTAATGTCGGCACAATTGGACATGTGGATCATGGAAAAACAACTTTGACAGCTGCTATTACAAAGATTCAATCCACAAAAGGCTTAGCTGAATACATTGCCTATGATCAAATAGACCGAGCACCAGAGGAGAAGGCTCGTGGCATAACAATAAATGCTTGCCATATTGGGTATGCAACACCAAGCCGCACATACGCGCATACAGATTGTCCTGGGCATGCTGATTATATTAAGaATATGATATCTGGCGCTTCTCAAATGGACGGTGCCATTTTGGTTGTAGCTGCTACAGATGGCCAAATGCCACAAACACGAGAACATTTGCTGCTTGCCAAACAAGTGGGCATTCAAcgtattatagtttttattaataaagcaGATCTTGTGGACCAGGAAGTTCTGGAGCTGGTGGAGATAGAAATGCGTGAAATGTTAACAGACTTTGGCTTTGACGGTGTCGGCAGTCCAGTAATCTGCGGTTCCGCCTTGTTGGCTCTGCGCGATGACAAATCTAAATTTGGCGTGCCTGCTATTGAAACTTTACTGGAACAGTGCGACTCTTATATTCCAACACCGACCCGTGATATAACTGGACCATTTGTTCTTCCCATTGACAATGCATTTACGGTACCTGGACGTGGCACTGTGGTGGTTGGCACAATAAAACGCGGCACAATACTGCGCAACAGCGATGCAGATCTTTTGGGATTTAACCAAAACATTAGAACAACTGTAAGCGATGTACAGATATTTCGCAAGAGTGTTCCTCAGGCACTCGCTGGGGAAAATGTTGGCGCCTTACTACGTGGTGTTAAAATTTCATCCGTTGAACGTGGGATGCTACTATGTTCCACGGGTACAGAAGATATATCGAACCATTTTGAAGGCTCCATGTATTTGCTCTCTCGAGCGGAGGGAGGCCGAACAAAACCGTTGCTTTCAAAATACATTCAACAGCTCTTTAGCATGACATGGAATGTACCTGCACGCATTGATCTCATTCCTAGTGATAGCATGCTCATGCCCGGCGATCATGCTCAGATACGTCTAACTTTGCTGCGAAAAATGGTAATGACTCCAAGTCAACCATTTACTATACGCGAAAATGGTGCAACTGTTGCAACAGGCATCGTCACCAAACGTTTGCCTTCATTGGATttgcctaaaaataaattatcaaaagcCAACATCAACtgctaa
Protein Sequence
MRCSYCLTDIDIAEWEQFVLHFHAIHNSLDLDENSKQLEPSLNSSHDEDSIQEEVLVDCNEVNIQVESEPYENSADDMQNMQQLHSESDIFDSFHERTASDSSGLETEPESETQQHDAEDVENSSWESPAYKFNPSFFRRNKHMTKFIELYKAHSCLWSPEHINYKETAACTMAYQNFITDFAAETGVSFNKQTLKAAIRKLHTQYNIIQTRVMNGSQKTNSVAFSYYTSCQFLRTCTSEGVESKKEKIQLDFTSTNWLTTEIIKQYSNFPQLYDHNHKEFSNVNSRKQAYETMAAEIDIPHTDINSDDVFLAIQHLRQWYYKGSKHAISEAEKSYLKSCRFLPPKMFKQKLTCEICHKATFSDHVLQVHLHKVHNIGELPFRCLLCDRSFIGRGEMSTHMQRVHIGKTHKCTYCDSTFAVISDLRLHIRTHTGSKPFVCEQCGKAFRLRSQLKLHVTAIHTKIRAFKCTMCPKDFIKKRDLTDHIKSHLGIRDKICGTCGKGFTNCHSLIRHRQIHAEVKKFASITRQKRTQKLSRVPLYYHELYSFLGQLEYAGSDSEEDSEEDKIKYGLNYRRKVGSLLLNYHQALKWNGNRNFSQNIAQKLRDREHCNVGTIGHVDHGKTTLTAAITKIQSTKGLAEYIAYDQIDRAPEEKARGITINACHIGYATPSRTYAHTDCPGHADYIKNMISGASQMDGAILVVAATDGQMPQTREHLLLAKQVGIQRIIVFINKADLVDQEVLELVEIEMREMLTDFGFDGVGSPVICGSALLALRDDKSKFGVPAIETLLEQCDSYIPTPTRDITGPFVLPIDNAFTVPGRGTVVVGTIKRGTILRNSDADLLGFNQNIRTTVSDVQIFRKSVPQALAGENVGALLRGVKISSVERGMLLCSTGTEDISNHFEGSMYLLSRAEGGRTKPLLSKYIQQLFSMTWNVPARIDLIPSDSMLMPGDHAQIRLTLLRKMVMTPSQPFTIRENGATVATGIVTKRLPSLDLPKNKLSKANINC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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