Cpro009438.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza procnemis
Gene Symbol
-
Assembly
GCA_035046065.1
Location
JAWNOJ010000023.1:14193767-14197426[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 5.5 3.9e+02 1.8 3.1 3 20 354 371 352 373 0.90
2 16 0.014 1 10.0 2.3 2 23 418 439 418 439 0.93
3 16 0.061 4.4 8.0 2.0 2 23 508 529 507 529 0.94
4 16 7.4e-06 0.00053 20.3 1.3 1 23 535 557 535 558 0.96
5 16 4.3e-05 0.0031 17.9 1.0 2 23 563 584 562 584 0.97
6 16 0.05 3.6 8.2 0.6 1 21 592 612 592 613 0.95
7 16 0.00085 0.06 13.8 0.4 1 22 633 654 633 657 0.90
8 16 1.1 79 4.0 3.7 3 21 664 682 664 683 0.87
9 16 0.0015 0.1 13.1 0.7 1 23 702 727 702 727 0.96
10 16 0.069 4.9 7.8 1.9 1 23 752 775 752 775 0.95
11 16 0.0045 0.32 11.5 0.5 3 23 782 803 780 803 0.93
12 16 0.00035 0.025 15.0 0.2 2 23 807 829 806 829 0.96
13 16 0.00013 0.0094 16.4 2.7 1 23 835 857 835 857 0.97
14 16 0.019 1.4 9.6 0.4 3 23 863 884 862 884 0.96
15 16 3.5e-05 0.0025 18.2 1.5 1 23 890 913 890 913 0.97
16 16 0.01 0.71 10.5 3.0 3 23 919 945 917 945 0.84

Sequence Information

Coding Sequence
atgtcggaaaacaacaaagcaagtTCAAGCTGCCTGCATTGCAgcacaaacaaaccaaatttaCATTATCAGGCAATTTATGATCAAGTGGGCTTGCAAATTGGCTTGGCCGACTTATTGTCCAAGTATTATAAGCTTAATGTGTCGCCCAAGGTTGATGCTAAGCAGCTGCTGTGCGAGGATTGTGTAAGTAATCTTATACAACTGTACGACATTGATGAGCTCGAAAAAGAACGCAACGCTGCGCAGCAGTCTAAGGCGCCGGCTAAAAGTGAAGCCAAAGTGCCGGAAAGCAATCCGCTTGCCGGTGCTAAGTCGCCTGCTGCAGCACCAAAACCGCCTGTTGCTGCACCTAAGCCGCCTGCTGCGCCCGTGGCTGTTAAAGCCTTTACCAAAGAGCGTGTAACACGTGCAAGTAGCGCAGCGCGTATTGCTGCAAAAACTGCGCTTGTAACAAGTAGCAGCAAGTTGGAAGAGCCCACCAAGCAAGTTAAGTCTTTGGTGACTATTGCTGAAGATGAAAAACCCAAAGTGAAGAGGCTGCTGCTACCCAGGCAGGCAATTATTTCTAAGGTTGCCGCCTCAAAGCGCAATAGTAAAGCAGCCAGCGTCAGCAAGGTAACACCAACTAAGGAACCAACAGAAGTTACTGGCTCACAGGATGCTATTAGTGTTTTGATGCAAAACATATTAGCTGACGATGGCGAAGGTGCAGCAATTAATGCCAATTTAACTGAACATAAATCTTCAGGCAAAACAATATTGGGCAATGATGAAGCCTACtataatatagaaaaactGGAAATTGATTTATCAGACGAGTTTGAAAGCATTGATTCTGATGAGGCCAATGCGCAAGAGCTTAAAATAGATATTGTTGGCGAAGTTGCGCCTGGCAAAAAATCGCGTAGCATCAATAGTCTAGAGGATGCAGCCAGCGTTAATACTTTCGAATTTTTGCCTATTAAAGAGAATGATGATATAGGCGACTTATACGATTACTTGGCGACGGTTGTAAAGACTTCTTTTGAGAGCTTAACTTTCGACTGGGAAACAATTTGTCAGCACTGCACCTACAAGTGCTCGGATTTTCAAGCTTTCTTTACGCATGCTTTAAAATGTAGGAGGCCAGTGAATGGTAATTTTAAGTGTCCCATAAGTGAGTGCACGGCACAGCTGCAGGGACGCAAAAAGCTGGCCATGCACTTGGTAGTACAGCATGCTGTGCACTTAAATGTGCCCATTTATGGCAGCTGTCCGGAATGTCAAATGACCTTTTCCAACATAACGACTTATAACAAGCATTCTTgtgcacatatttttaaaaagaaacgcGGCGCGCTCTTGCATTGTCAACTATGTGCTATAGAATTTCCCTCATGGAAACGCTATCTTTTTCATACACAATTTCACTTTGAAAAACATCGTCCCAAAGCTTGTTTCATATGCAGATACGTTGAGCATGATCTGGACTCACTATTTCATCATTTAAATTACGCACACGAGCCCAAAGCCAGCTTGTGCTGTACCACCTGCGATCGTATGTTTCGCGATCCGCAAATATTCGAAGAGCATAAATTAACGCATACAGTTTCCGGCACCTATACCTGCAATGAATGCGGTATTACTTTTGAGACACGCGGCCGCCTAAATGGGCATTTGcgtACGCATCACGGCGCTTTAATATACTGTGAACTCTGCTCAAAAGAGTTTTCTACAGAAACCACATTTAATATACATATGAAAACACATTTGATTATACAACGCGAACTTTATGTATGCACCAATTGCCATAGATTAAGCGCTAATCAGGATACTATGCGGAAACACGTAAACAACGAAGAAGTTAGCGCCTGTTTTGGCGTTGAAGTCGTCAAAGAAGTGCTACGTGATGCCTATATTTGTGAATATTGTTCTGCTTactttaaaactaaagaagCATTGCGTATGCATCGTCAGTCGGGTATACACACGGATGGGCTCTTCTGGTGTGATCCCTGCGGTAAGCATTTTACCCATGTCAAGCTGTATCGTCATCATtttcgacaacaacaaaagttacgCACGGATACGGCGCacagaaaaattgaaatgtgcATTTACTATATGTGTGATTATGagAACTGCGATGAATCGTATATTAACTGGAACTCGCTGTATACACATAAGCGACGCACACACGATTTAGTAAAATCCACAGATGCAACATCTACAGCAAATGCAGACAAAGCCGCTGCAAATGAGAAACCACTATTCATTTGTCAATTCTGCAAAAAGGAATGCCAGACGAAGATGTCTCTAGCAATACATGTAGCGCGCAGTCATAACAATAataatgTTATATGTTCGCTGTGTAATGCCTCCTATAAGAACGAAGAGCTCTTGCAAAAACATCATGAATACTGGCATGAGCCTACCGAGTGTCCTATCTGCTTAAAAGTGGTCAAAAATCGCCGCAATTATGAAACGCATATTAAAGTGGTGCATTCCAAGAAAAAGCGTTACAATTGCAGCATCTGTAAAAAGGGATTTTATCACAAAAGTGAAATGACTGTGCATGAGCGGTTGCATACCGAAGCACACGGCTGCgagatttgcaattttaaaacgcGTAATAAGGCTTCTTTAGAGCTACATAAGTTGGTGCAACATTTCAAGAAATATCCATTTGAATGCAAGATTTGCTCTAAGGGTTTTGGACGCAAGCAAGGTTTGACCTATCATATGCAACGTAAACATGGTGAAAAACATCGTTGTCGTGATTACCTGTCAGAtggttgcaacaaaatattcacttCAATGACGCACTTGAGCACACATGTACGCAAAGTGCATAAGAGCACCATACAGCTAGAGGAACTCGATGATGCAAGTAACAATGAGGTTTCACAGTCCAAACCTCGCTGTTTTAAGATTGACGATATGCGCATAGAATTTATTGACATAGATGATGAGGAAATCGCAAATGAATCTGCAAATTATGAAACaattgatgatgataatgatatgGAAACTGACTCTAATGTTGTAACGGATGTAATTGAAGAGTTGGAAAATGAGGAGGCGTAA
Protein Sequence
MSENNKASSSCLHCSTNKPNLHYQAIYDQVGLQIGLADLLSKYYKLNVSPKVDAKQLLCEDCVSNLIQLYDIDELEKERNAAQQSKAPAKSEAKVPESNPLAGAKSPAAAPKPPVAAPKPPAAPVAVKAFTKERVTRASSAARIAAKTALVTSSSKLEEPTKQVKSLVTIAEDEKPKVKRLLLPRQAIISKVAASKRNSKAASVSKVTPTKEPTEVTGSQDAISVLMQNILADDGEGAAINANLTEHKSSGKTILGNDEAYYNIEKLEIDLSDEFESIDSDEANAQELKIDIVGEVAPGKKSRSINSLEDAASVNTFEFLPIKENDDIGDLYDYLATVVKTSFESLTFDWETICQHCTYKCSDFQAFFTHALKCRRPVNGNFKCPISECTAQLQGRKKLAMHLVVQHAVHLNVPIYGSCPECQMTFSNITTYNKHSCAHIFKKKRGALLHCQLCAIEFPSWKRYLFHTQFHFEKHRPKACFICRYVEHDLDSLFHHLNYAHEPKASLCCTTCDRMFRDPQIFEEHKLTHTVSGTYTCNECGITFETRGRLNGHLRTHHGALIYCELCSKEFSTETTFNIHMKTHLIIQRELYVCTNCHRLSANQDTMRKHVNNEEVSACFGVEVVKEVLRDAYICEYCSAYFKTKEALRMHRQSGIHTDGLFWCDPCGKHFTHVKLYRHHFRQQQKLRTDTAHRKIEMCIYYMCDYENCDESYINWNSLYTHKRRTHDLVKSTDATSTANADKAAANEKPLFICQFCKKECQTKMSLAIHVARSHNNNNVICSLCNASYKNEELLQKHHEYWHEPTECPICLKVVKNRRNYETHIKVVHSKKKRYNCSICKKGFYHKSEMTVHERLHTEAHGCEICNFKTRNKASLELHKLVQHFKKYPFECKICSKGFGRKQGLTYHMQRKHGEKHRCRDYLSDGCNKIFTSMTHLSTHVRKVHKSTIQLEELDDASNNEVSQSKPRCFKIDDMRIEFIDIDDEEIANESANYETIDDDNDMETDSNVVTDVIEELENEEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-