Cpro014381.1
Basic Information
- Insect
- Chymomyza procnemis
- Gene Symbol
- -
- Assembly
- GCA_035046065.1
- Location
- JAWNOJ010000026.1:35599240-35603584[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.35 25 5.6 2.7 2 23 402 423 401 423 0.95 2 13 0.00048 0.034 14.6 2.3 1 23 503 526 503 526 0.97 3 13 0.027 1.9 9.1 1.2 1 20 533 552 533 554 0.93 4 13 0.015 1.1 9.9 5.2 1 23 563 585 563 585 0.98 5 13 0.00032 0.023 15.1 0.1 1 23 592 615 592 615 0.97 6 13 0.002 0.14 12.6 1.0 2 23 623 644 622 644 0.96 7 13 0.034 2.4 8.8 0.0 2 21 671 690 670 691 0.93 8 13 0.0075 0.53 10.8 4.7 1 23 736 759 736 759 0.98 9 13 0.0011 0.081 13.4 0.8 1 23 796 818 796 819 0.95 10 13 0.01 0.73 10.4 5.0 2 23 840 862 839 862 0.95 11 13 0.00054 0.039 14.4 0.4 1 23 876 898 876 898 0.95 12 13 3.8e-05 0.0027 18.1 0.7 1 23 904 926 904 926 0.99 13 13 1.9e-05 0.0014 19.0 2.4 1 23 932 954 932 954 0.95
Sequence Information
- Coding Sequence
- atgaaTTTGCCAAAGTTTTGCCGTACTTGTGACAGAGAAGATACGGGAGAGCTTTACGGACTCTCAACACTCTCAAAAAACTATCCGAAACGAACGCTTTCAGAAATGCTAAGTGATTTAACCAAAATTGAAgcAACTGGTGACTCCCTCAAAAAGCTGCCCCAATGCATATGCGACAATTGTTGCCATAAACTGAACAACGCGTATGAGTTTGTTGTACAAGCGCGTAAAGCCCATGAACTCTTAATCGGATGCCGGTTGGAGGATGGTTTTGAGCAAAACGATGATTGTTTACACAATGCCGGTTGCTTCTCCAGTGAACTTGAAACATTTGAGACTGTACAAGTTGAAATTATGGAATTTGATGACAAAATAGCTGAAAATGAGTTTTTGtggaataataatattgatcCACTGTTGgataacataaattttctagacgaaaatttaagtaaagctACAGCCAAACATCATCATATGCCACAAACAAGCTTTATTGATAACGTATGTGAAAATACAACTAACGCAGAACCTTTTATGGAGCATACACAGGTTCTGTCAGCTTTTGAGCCACAATTACCTCCATGTACATCCcctgtttcaaattttatacaaaatccCGCCGTTGAGTTAGAACCTGTAGCGCAAGAACTTCcagcaacatttaatttttacccaTTGAAGCATCAATcagttgctttaaatattcCCGAAATAAATGCTAGTGATTTAGATCCATTGCTTATAGATGTTAACGATTTGCAGCATACTCAAAGGAATGAGCGCTCAGATGTCAGTGATCCTTCAGCTGTGGGCGTGTTTAATAAGACACAAAATCCTACAACTGCCCGCATTGATCGCAGAAAACCGAATGCAACAGCTGAACAAAAGAGCGTGAATACCCGCACAGCTCGCAGctCGACTTCGAATCATAAGAAAATGGGCTCTGACGATAACAGAAAACAGGATCAAGCTGCCAACCAAAACAGCGTGAATACCCGCAATGTACATAGctgtaaTCCCAATCATATGAGCTTCTACGATAATAGAAAAACAGCTAAGCTAACGAAAGACGAGGCAGCGCAACAGAGACTACTTCAAAATTGTGCAGTTCCCTCCCGAATAGGTacaaaaaatctcaaaaagaAAGTAGtgccaaaaattgatttaaatatgtGCAAGCCACACGGACTGAAGCTCATACAGTGTATGATATGTCAGCAGacttttagaaaaatcttCGAGTTACGTTGTCATCTCAAGGAACATCCAGCGGTAAATAGCACAGATAGTATTGGTGAACTTAAGACCCTGCTGTATCCGGATCTGCAGCAATTAAATAGTCCACAGTTGTGCGAACGCATAGCTAAAGATTTGAGTGCAGAAAACTATGCACGTTTCTACTCCATCACCAGCCAATGTGGCTATGAATTGGATCTGTACAGTTCGGAGACAGAAAGCGAAACAGCGGAGCCAGATGAGCTGTTCCTTGAGCACAAAACCAATTATGTTTGCGAACTTTGCCAGCAAAGCTATGGACGCAAGCATCAGCTTTATGAGCATCAACGATTGCAGCATCCTGGTAGCGTGGCTCCACATATTTGCAGCCGCTGTAATGCGCGTTTTGTCAGTCGTCAGCTGCTCAATCATCATTACATCAACCAATGCAAGAATACCTCAAGACGTTATGCTTGTCGCCATTGTCCACAGCGTTTTTACTGGAAGCATAATTTTAAGGCTCATATcaaaagtcacaaaaaatTGGAAGAAACTTTTACTTGTGTGGCCTGCGGCAGAAGTTTTGCGGAACAAAAGTCCCTAAGCGTGCATCTACTCACCGTTCATGCTGACGAAGATCATTTGGTGCCATGCCTTTGGTGCAGTCGCAAATTTTATCGACGCGATTTAATGCTCAAGCATCTGAAGCGTCATGGCCTAAGCGAACAGAATCTACCATTAGCTGAGACTTTGCTAGCGGCTACATCAAACCCCCATGGTCTTAAGGATATTAGCTGCAAGATTTGTGAAATACAATTCGAAACTATGGCAGAATTGCGTCTACATCTACAACTGGAAGTTAAGATGGCCGATTCCATGCATTTTCCGTATGAGTCGGCGCAAAACTATTCCATAACCAATGAGTTTGGTTTTGAACTAGAACTGAATGACTCGGAAACAGATGATGAAACGACTGTGCCCTCTCTCTATACATGTGATCTTTGCCATATACAATGTCAGCGCAAATTTGAACTGATGCTGCATCAACGCACCATACACAGTTTTGACAGGATGCCCTACGAATGcgaatattgcatatttaaatgtgTTTCCAAGAATATTATGGATCATCATAAGCTTGGTCAATGTCTAAATGATGAAAAGCGATTCATTTGCCCCAAGTGCAATTACAAATTCATGTGGCCGGAAAATCTGCAACAGCATATATTATTGCATCACGAAGGATACGACGATGAGTCTACTAAGCCCCAACCTGTTATTAACTCAAGCAAATTACTGCAATGTCCGCATTGTGAGCGCAGTTTTCGTTGGCGCACCTGCCTCAATAATcacatcaaaaataaacatctcAAAGACAATGGAAAATCTAACATATCAGCTGGACGATTTCTTTGTTCGCTTTGTGGAATGACAATGCGTTCCAGAGCCAGCTTAATCATACACATGCGACGTCATACGGGTGAAAAGCCCTTTAAATGTGAATTATGCGACATGGGCTTTCCACGCCATGCTGATTTGGTATATCATCAGCGTATGCACACCGGTGAAAAGCCCTTCCTATGCACCATTTGTGCCAAGAGTTTTGCGTATTCACATAAACTCAAGCGTCACATGGCTACACACAGTACACTAAAACCACATAAGTGA
- Protein Sequence
- MNLPKFCRTCDREDTGELYGLSTLSKNYPKRTLSEMLSDLTKIEATGDSLKKLPQCICDNCCHKLNNAYEFVVQARKAHELLIGCRLEDGFEQNDDCLHNAGCFSSELETFETVQVEIMEFDDKIAENEFLWNNNIDPLLDNINFLDENLSKATAKHHHMPQTSFIDNVCENTTNAEPFMEHTQVLSAFEPQLPPCTSPVSNFIQNPAVELEPVAQELPATFNFYPLKHQSVALNIPEINASDLDPLLIDVNDLQHTQRNERSDVSDPSAVGVFNKTQNPTTARIDRRKPNATAEQKSVNTRTARSSTSNHKKMGSDDNRKQDQAANQNSVNTRNVHSCNPNHMSFYDNRKTAKLTKDEAAQQRLLQNCAVPSRIGTKNLKKKVVPKIDLNMCKPHGLKLIQCMICQQTFRKIFELRCHLKEHPAVNSTDSIGELKTLLYPDLQQLNSPQLCERIAKDLSAENYARFYSITSQCGYELDLYSSETESETAEPDELFLEHKTNYVCELCQQSYGRKHQLYEHQRLQHPGSVAPHICSRCNARFVSRQLLNHHYINQCKNTSRRYACRHCPQRFYWKHNFKAHIKSHKKLEETFTCVACGRSFAEQKSLSVHLLTVHADEDHLVPCLWCSRKFYRRDLMLKHLKRHGLSEQNLPLAETLLAATSNPHGLKDISCKICEIQFETMAELRLHLQLEVKMADSMHFPYESAQNYSITNEFGFELELNDSETDDETTVPSLYTCDLCHIQCQRKFELMLHQRTIHSFDRMPYECEYCIFKCVSKNIMDHHKLGQCLNDEKRFICPKCNYKFMWPENLQQHILLHHEGYDDESTKPQPVINSSKLLQCPHCERSFRWRTCLNNHIKNKHLKDNGKSNISAGRFLCSLCGMTMRSRASLIIHMRRHTGEKPFKCELCDMGFPRHADLVYHQRMHTGEKPFLCTICAKSFAYSHKLKRHMATHSTLKPHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -