Cpro012614.1
Basic Information
- Insect
- Chymomyza procnemis
- Gene Symbol
- zfh1
- Assembly
- GCA_035046065.1
- Location
- JAWNOJ010000026.1:6760232-6802512[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0029 0.21 12.2 1.9 2 23 78 100 77 100 0.95 2 9 0.024 1.7 9.2 0.1 1 23 292 314 292 314 0.95 3 9 3.2e-05 0.0023 18.3 1.8 2 23 328 349 327 349 0.97 4 9 1.1e-05 0.00081 19.7 6.4 1 23 358 380 358 380 0.99 5 9 0.00033 0.024 15.1 1.2 3 21 388 406 386 407 0.94 6 9 0.0018 0.13 12.8 0.5 2 21 682 701 681 702 0.92 7 9 1.5e-05 0.0011 19.3 0.5 1 23 1088 1110 1088 1110 0.94 8 9 5.5e-05 0.004 17.5 7.4 1 23 1116 1138 1116 1138 0.98 9 9 0.0028 0.2 12.2 4.3 1 21 1144 1164 1144 1165 0.96
Sequence Information
- Coding Sequence
- ATGTTGTCCTGTTTGGCGCCGTCGTCTACACGTTTTGGCCAAGAGGATAATATTATACAGCAGAGTATGCCATCGTCCACAGCCTTTACCATGCAGTTTCCCTCTTTGGCGTCCAGtctgcatcatcatcatatgcACAACAAGGCAAGCAATGCACCGAACAACCAGGAGCATGTAGAACATGCAGCAAGTGCCACAGATTTGACCGGCAATGCCGAGGACTATCTGGTTAAATGCACGCAATGCCACAAACGCTTCACTGAGTTTCAGTCGCTCAGCGAGCACATTGCCAGCGAGCATCCGCATGACAAGCTTAACTTTGAGTCTAGTCGTGGCGCCAATCTAGGTGCCGCCACACAGCCGGAGAGCGATGCTGAAGATGCCGAGCAGCTGGATGAGTGCGAtcaaagcaacagcagcagcagtcgaaAATACGCCAAGACACCGCCCAATGCCAGCAGCgccagcaataacaataacaacaataacaatgagaCGGCCAagaatcacaacaacaacaataacagcagcaacagtatTAACAAGCACTCACCCATGTGCTCGCCCAGCTCAGCGCCACATAGCGCCAGTGAGCTTTTTGCACACTTGCCACATGCGGCCGCTGCCGCTGGCACACATCCGCCACATTTGCCCGCCCAATTGCATGCACAGTTTATGGCTGCCGCCTTGGCCATGCAATCCGCACGCACCGCCAGCTCGCCCAGCAATCAACTCTTGCCACCGCCACATCATCCACAGCTGAATGGTGGCAGCAATAGTAGCGTTGGTAGCAGTTCCTCATACGATTTGGATTTGACTGCAGCACGTTCCACCTCCAGTCCCGGTTCAATAACGGGCGATCTCAATGCCAGCTTTCCCTGTATGCAGTGTACGGCTGCGTTTGGTTCACGCGAACAGCTGGAGCAGCATGAGTTGCTGCACACACCGGGCGCACAGCAGTCCACACAGAATGTGACACAGACCTGCAAAATATGCCACAAAGCCTTTGCCAATGTCTATCGCCTGCAGCGTCATATGATCAGCCATGATGAGTCCGCACTGCTGCGCAAATTCAAGTGTAATCAATGCGATAAGGCCTTCAAGTTTAAGCATCATCTCAAGGAGCATGTACGCATTCATTCCGGTGAGAAGCCCTTTGGCTGTGACAATTGCGGCAAGCGTTTCTCGCACTCGGGCTCGTTTAGCTCGCATATGACCTCCAAGAAGTGCATAAGCATGGGCATTAAGTTGAACAACAATCGCGCCATGCTCAAGACATTGGAGAAAAGCGTCAATGTTGGTCTGGGCAGCACTGGTCGCAGCCTCGTcgaacagcagcaacaacagcagcagcagcagcagcaaatgcaacaCAACAAGCGCGCCAGCAATAATAGCCTAAAGCTGCCGGAGCAGTCAGCGGCCTTGGCTGCTTTGCCGCCCAGCTTGCCGAATCCCATGAACTACTTTGCTGGTGATGCGGCAGCCAGTGCAGTGCCCAACAATGCAGCGGCGCCATTTTATCCCAACTACAGTGCCATGAATGCTGCGCTATTGGCCACAAATGCGCTTTATAGCATGGCCATGGATCCACGCATACATCCCTATAGCATACAGCGATTGCTAGAGCTGACAGCTGCaggacagcagcagcagcatcaccagcagcagcagcaacttgaaCAGGAGGAGCAGCTTTACGATGAGCTCAAGCCCAGCGTTAAGGACGAAGAGGAAACACACGATGAGCCTAAATTGGTCATGGACCTGGATGAGGCAGAGGAACGCGCCAAGGAGCTGGAGCATGCAGTTGCGACCACACCGCAGGCAGCACACTCACCTGTCATAGAAACAGCAGCCGATGCGGCGTCTGTTAAACAAGAGCCCAGTCGTGAAGCTACACCTGTTACCAGCATTGGCAGTGCACCAGCCTCACCCAAGCCCATAAAACAAGAGCAATTGGAAGCAGCAGCCTTGGATATACAAGTCGCAGCTGAGGAACCAGCACGTGTCAGTCCAGCCATCGATGTAGATGCTGAGTTACGCTGCAGCCGCTGTGACAAACAATTCAATCATCCCACAGAGCTGGTGCAGCATGAGAAGGTGCTGTGTGGCTTGATTAAGGAAGAGCTGGAACAGCACTAccagctgcaacagcagcaacaacagctgcgcCTGGGCGATGAGCCCAGCAACAACTCCTTTTCATTGCTGCCCTCCGCCAGCGAGGCTGACGAAGAAGAGGAACATGTCGATGCTGATGAGGATCGTAATGACTTGGAGCAGCGTCAGGACTTTAATGGCAGCGATAGCAGCGAACGCAAAGTACGTGTGCGCACAGCCATCAatgaggagcagcagcagcaattaaaGCAACACTATGCCGTCAATGCGCGTCCCAGTCGCGATGAGTTCCGCATGATTGCCGCACGCCTACAACTGGATGCACGTGTCGTGCAGGTCTGGTTCCAGAACAATCGCTCACGTGAGCGCAAGCTGCAAAGCTATGCGGTAAATGCCTCCAACTCAAACTCCAGCGAGCCCGCAGCGGCCACAGTAGTTGGACTACGCGAAGATCAACCTTTGGATTTGTCTGTCAAACGTGATGCCTTGCTGTCCAAGCGCAATGGCGCACAACTGCATTCGCCTTTGTATGGACTGGCGCCACAGCAGGCGGGTCAGGCGTTGCTTAACAATGGCGCAGATTTCCAAGAGGCCATTAATCTTAGCCGCAAGCTGTCCAGCACCGCCTCACTTTCACCGTCTTCGTTGTCGCCTTCCTCGGGCGCCTCTGTGCCAGTGTTTAAGCAGcaagccgctgctgctgcagctgcagcgctTTACTTTGGTGCACCACCGCAACAGACGCCATCACCACCCATGCTGGATGCCAGCGTTACTACAGTGCTGCCGCCACAGCATAGCTCAACACCACGCAGTGCCGCTGGCGCCTTTACACGACTAACTGAACACTTGCCGCCGTACATGCTGCCTAGCGCCATGCAACGCGGCCTAGTACCGATGGAGGCGCTCTTCCAGATGACGCCCAGCGAGTATGCGCGTAATCCGCTTATGAACAGTATTAAATTGCCCGACTATCGCGGCACTAGCCTAAGTCCAGGTGGCTCGGAAAAGCGCTCTTGGCGCGATGATGACTCACGCATAAGCCATGAGGATGACTACAGCGGTGGTTTGTTGCCGCCCAAGCCCAAACGCGCCAAGGCTGAGACACATGGACATGCAGGCGATCCTGATTTGCCTTTTGTATGCGATCAATGTGACAAGGCCTTTGCCAAGCAAAGTTCGCTGGCGCGTCACAAATACGAGCATTCCGGTCAGCGTCCCTACCAATGCATGGACTGCCCCAAGGCATTCAAGCACAAGCATCATCTGACCGAGCACAAGCGTCTGCACAGCGGCGAGAAGCCCTTTCAGTGCTCCAAGTGCCTAAAACGCTTCTCCCACTCGGGCAGCTATAGCCAGCACATGAACCACCGCTACTCCTATTGCAAACCTTACAGGGAATAG
- Protein Sequence
- MLSCLAPSSTRFGQEDNIIQQSMPSSTAFTMQFPSLASSLHHHHMHNKASNAPNNQEHVEHAASATDLTGNAEDYLVKCTQCHKRFTEFQSLSEHIASEHPHDKLNFESSRGANLGAATQPESDAEDAEQLDECDQSNSSSSRKYAKTPPNASSASNNNNNNNNETAKNHNNNNNSSNSINKHSPMCSPSSAPHSASELFAHLPHAAAAAGTHPPHLPAQLHAQFMAAALAMQSARTASSPSNQLLPPPHHPQLNGGSNSSVGSSSSYDLDLTAARSTSSPGSITGDLNASFPCMQCTAAFGSREQLEQHELLHTPGAQQSTQNVTQTCKICHKAFANVYRLQRHMISHDESALLRKFKCNQCDKAFKFKHHLKEHVRIHSGEKPFGCDNCGKRFSHSGSFSSHMTSKKCISMGIKLNNNRAMLKTLEKSVNVGLGSTGRSLVEQQQQQQQQQQQMQHNKRASNNSLKLPEQSAALAALPPSLPNPMNYFAGDAAASAVPNNAAAPFYPNYSAMNAALLATNALYSMAMDPRIHPYSIQRLLELTAAGQQQQHHQQQQQLEQEEQLYDELKPSVKDEEETHDEPKLVMDLDEAEERAKELEHAVATTPQAAHSPVIETAADAASVKQEPSREATPVTSIGSAPASPKPIKQEQLEAAALDIQVAAEEPARVSPAIDVDAELRCSRCDKQFNHPTELVQHEKVLCGLIKEELEQHYQLQQQQQQLRLGDEPSNNSFSLLPSASEADEEEEHVDADEDRNDLEQRQDFNGSDSSERKVRVRTAINEEQQQQLKQHYAVNARPSRDEFRMIAARLQLDARVVQVWFQNNRSRERKLQSYAVNASNSNSSEPAAATVVGLREDQPLDLSVKRDALLSKRNGAQLHSPLYGLAPQQAGQALLNNGADFQEAINLSRKLSSTASLSPSSLSPSSGASVPVFKQQAAAAAAAALYFGAPPQQTPSPPMLDASVTTVLPPQHSSTPRSAAGAFTRLTEHLPPYMLPSAMQRGLVPMEALFQMTPSEYARNPLMNSIKLPDYRGTSLSPGGSEKRSWRDDDSRISHEDDYSGGLLPPKPKRAKAETHGHAGDPDLPFVCDQCDKAFAKQSSLARHKYEHSGQRPYQCMDCPKAFKHKHHLTEHKRLHSGEKPFQCSKCLKRFSHSGSYSQHMNHRYSYCKPYRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339039;
- 90% Identity
- iTF_00338228;
- 80% Identity
- iTF_00339039;