Cpro014385.1
Basic Information
- Insect
- Chymomyza procnemis
- Gene Symbol
- -
- Assembly
- GCA_035046065.1
- Location
- JAWNOJ010000026.1:35613664-35616503[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0006 0.043 14.3 1.8 1 23 222 245 222 245 0.96 2 13 0.26 18 6.0 0.2 2 23 274 295 273 295 0.93 3 13 9.9e-05 0.0071 16.8 1.3 1 23 385 408 385 408 0.97 4 13 0.038 2.7 8.6 1.2 1 19 415 433 415 436 0.91 5 13 2.4e-05 0.0017 18.7 2.8 1 23 474 497 474 497 0.98 6 13 1.4e-05 0.001 19.4 1.0 2 23 504 525 503 525 0.96 7 13 0.027 1.9 9.1 0.1 2 21 552 571 551 572 0.94 8 13 0.37 27 5.5 1.1 1 23 622 645 622 645 0.96 9 13 0.061 4.4 8.0 1.7 1 23 682 705 682 705 0.94 10 13 0.0025 0.18 12.3 1.7 2 23 737 759 736 759 0.95 11 13 0.00038 0.027 14.9 0.1 1 23 770 792 770 792 0.96 12 13 0.0016 0.12 12.9 2.6 1 23 798 820 798 820 0.99 13 13 4.6e-07 3.3e-05 24.1 1.9 1 23 826 848 826 848 0.98
Sequence Information
- Coding Sequence
- ATGAAGCTACCAATAATTTGTCGCACTTGCGATGCAAGGGACAgcgacaatttatttaaactaacaACGCCCACAAAAAAGTATCCAGACAAAATGCTATCAGATCTGTTGACGGAATTAACCGAAATAGATCTAAATGGATGCTATGCACAAGAACTGCCGCAATCCCTGTGCAGCAGTTGCACCATGAAGTTAATCAGTGCTTATTACTTTGTTAGGCAAGTTCGTGATGCCAACGAACTATTAATGAATCATCTAAAGAATAGTCAATTAAATGCGCATCCTACCTGCTTGCAAGAACTACCAATGGAGTTGTGCGCGGAACAGCATGTGGAAGTTAAAATGGAAACTAAAGATGATGAAGTAAATGGTGTTATTACCTGCACAGAGCTGCCAGAGTTGGCATTGATACAGCAGCCCGAAGCGGTGGATGCACTTGAGGAAATTGACACAGTGACTGCCAAACCCATAGAAGAAATACTAATATCACCAGAAATACTGAAGCAAGAGCAGGATACGGATACGGATACATGCTCCATAGGCTTAGATGAAACATATATGCCTAGCAAAGATTGTGAAGACGAAGATTCACTAGACGATTTGCCATTAAAGCAACTTGCACGCAAATGGAAAGTTAAGAAGCGTTCGGGTGCtaagaaaaaatacaattgttaTGAATGCTCTGAAAGttttacaaatgcaaattttttgaaacaacatTACTCACGCTTACATAAGACCAAATCAACGCTGAATGAGCTGCAAAAAGCCAAGGATATCAATATCAACCTTTGCAGGCCAAATGGTTATAAGTGCATTGAATGCATGatatgtcaaaataaatttggtaaaatagCAGAACTACGACGGCATTTCGAGGAGCACGCTGCCACAATTGATACTGAAGAGCAGCTCACATTAAAGTTTAATGAGCTAGCAGAACTTTTGTATCCCGATTTAAAGAACTTGACAGAGCAGCATTTAAGAAGTCTTATTCGAAAGGAACTAACAGCTGGTGCATACGGTCAATTTTATTCCATAACGAATGAGTTTGGTTACGAAATGAATTTGGACAGCTCGGAAACGGAAAGCGAAGATGAACTGGCCGCCGAAGAATCTGCAGCTAAACAAGAAAGCAATAGGGAAGCAAAGTACACATGTGAGCTGTGCCAGCTAAGCTATCCACGCAAATATCAGCTCTATGAACATCAACGTCTAACACATGCTTGGTCGGAGGCGCCACATGTTTGCAGTCGTTGTGATGCGCGTTTTGTAAGCTTTGAACTGCTGAAGCATCACAACGAAACACAATGTAAGAATTCGCAGAAACGCTTTCTTTGTCGCAAATGTCCCATGCGTTTTCGTTGGAGGCACAATCGTTTGGCGCATTCACGCGATCATCACACTGCTGACCAAACTTTCGAATGCAACAAATGCCATCAAGTGTTTGATAAGAAACGTTCGCTATCTGTACATTTACGTACTGTGCATGACGATAAACCAATTATACCCTGCCAATGGTGTAATCGCACCTTTTTCCGTAATGATTATTTGATAAAGCATCTAAAGCGTCATGGCATCAATGAGCAGGATATACCATTGGCCGAAACGCTTATAGCGGCAACAACTAAACCTAATGGTCTGAAGCATATTACCTGTAAGGTTTGCAATCTGCAGTTTCAACGCATTGCTGATTTACGTGGACATATGCAATTGGAGTTAAAGTTGGCGCTTTCTCAGCATCAAAATTACGAATCCTTTGAGAATTATTCCATAACAAATTGCTCTGGTTTTGAGCTGCATCTAGATGACTCTGAAACTGAAGATGAATGTACTGCTATGCCCTATAAATCGCAGACAGTTTATATTTGTGAGCTCTGCCAGGTGCAAGGTCGAcgcaaatatgaaataatgcAGCATCAACATTCCATGCACCGCTTTGACAAAATGCCATACAATTGCGATCGTTGCATATTCAAAAGTGTTTGTAAGAGCTTAATGGAGCATCACAAGCGCGTGCAGTGCCTCAGCGAGCAAAAGAAACATGCCTGCAAGCGgtgtagttttaaatttatgtggcCAGAGAATCTGGAAAAGCATATGCAATTGCAGCATGCTGGTTGTGAGCAGGCAACCCCCGAGCACGACGCACAAAAAGCTGACGCTGAACTCAAAAGCGAAGAGTCTGAGGTTGGCGCACAACTACTGCAATGTCCACACTGTGATAGAACTTATAAGCTGATGAAACGTCTCAATTATCACATACGCGATGTGCACACCAATCAAAAGCGTAAGGCCATGAAAAATTACCTATGCTCACTATGCGGCAGGGGTACGCAGTCGGCGGCCAGCTTGGCGACTCATATGCGCAGGCATACCGGCGAAAAACCCTTTAAATGTGATTTGTGTGAGATGGCCTTTCATAACAATTCGGAAATGGTATATCACAGACGTAAGCACACCGGCGAGAAACCATATCATTGTTCAATTTgtggtaaaaattttgctcGTTCCGATAAACTTAAGCGGCATCAGATCATACACAGCAGTGCGAAACGTTTGAAATAA
- Protein Sequence
- MKLPIICRTCDARDSDNLFKLTTPTKKYPDKMLSDLLTELTEIDLNGCYAQELPQSLCSSCTMKLISAYYFVRQVRDANELLMNHLKNSQLNAHPTCLQELPMELCAEQHVEVKMETKDDEVNGVITCTELPELALIQQPEAVDALEEIDTVTAKPIEEILISPEILKQEQDTDTDTCSIGLDETYMPSKDCEDEDSLDDLPLKQLARKWKVKKRSGAKKKYNCYECSESFTNANFLKQHYSRLHKTKSTLNELQKAKDININLCRPNGYKCIECMICQNKFGKIAELRRHFEEHAATIDTEEQLTLKFNELAELLYPDLKNLTEQHLRSLIRKELTAGAYGQFYSITNEFGYEMNLDSSETESEDELAAEESAAKQESNREAKYTCELCQLSYPRKYQLYEHQRLTHAWSEAPHVCSRCDARFVSFELLKHHNETQCKNSQKRFLCRKCPMRFRWRHNRLAHSRDHHTADQTFECNKCHQVFDKKRSLSVHLRTVHDDKPIIPCQWCNRTFFRNDYLIKHLKRHGINEQDIPLAETLIAATTKPNGLKHITCKVCNLQFQRIADLRGHMQLELKLALSQHQNYESFENYSITNCSGFELHLDDSETEDECTAMPYKSQTVYICELCQVQGRRKYEIMQHQHSMHRFDKMPYNCDRCIFKSVCKSLMEHHKRVQCLSEQKKHACKRCSFKFMWPENLEKHMQLQHAGCEQATPEHDAQKADAELKSEESEVGAQLLQCPHCDRTYKLMKRLNYHIRDVHTNQKRKAMKNYLCSLCGRGTQSAASLATHMRRHTGEKPFKCDLCEMAFHNNSEMVYHRRKHTGEKPYHCSICGKNFARSDKLKRHQIIHSSAKRLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336171;
- 90% Identity
- -
- 80% Identity
- -