Cpro005613.1
Basic Information
- Insect
- Chymomyza procnemis
- Gene Symbol
- ZNF219
- Assembly
- GCA_035046065.1
- Location
- JAWNOJ010000016.1:8911300-8917477[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00016 0.011 16.1 6.8 2 23 212 233 212 233 0.98 2 13 0.0029 0.21 12.1 0.1 1 22 238 259 238 262 0.91 3 13 1e-05 0.00075 19.8 1.4 3 23 268 288 266 288 0.97 4 13 2.4 1.7e+02 3.0 2.9 1 23 294 316 294 316 0.84 5 13 2e-05 0.0014 19.0 1.7 1 23 322 344 322 344 0.97 6 13 4.3e-05 0.0031 17.9 3.3 1 23 350 372 350 372 0.98 7 13 0.0038 0.27 11.8 2.0 1 23 377 400 377 400 0.92 8 13 3.1e-06 0.00022 21.5 0.9 1 23 557 579 557 579 0.98 9 13 1.4e-06 0.0001 22.6 0.9 1 23 585 608 585 608 0.98 10 13 2.4e-05 0.0017 18.7 2.4 1 23 614 637 614 637 0.95 11 13 0.00052 0.037 14.5 5.0 2 23 644 665 643 665 0.97 12 13 0.0001 0.0074 16.7 2.8 1 23 671 693 671 693 0.95 13 13 0.0023 0.17 12.4 0.7 1 23 699 722 699 723 0.95
Sequence Information
- Coding Sequence
- ATGGCCACCGAAACACAGATGGTACCCATCTTTAATAGATACTCTACTATGGAGAAGAATCAACCCAGTTTGGTTACAATGCTGAGGCAATGCACCAATTGCGAAATAGAACAAACGGATGGTTTGCCGCAGcagatttgcttaaaatgcgCCAAAGCAACACGTGAGGCTTATAATTTTAAGCGCCTTTTTATAGAGAATGATAAGTTGCTACGCCAGCCAGCTACTAGTGAAGCGTCCACCTCGCCACTGGTACAACTGAAGCAGATTGAAAAAATCATTCAGTCTCCCAAGATTAAACAGCAAGTATTGCAGGATGAACAGTGTCAGCGTCACTGGGGAATAAAGTACAAGTTACCAGGCATCAAGAAAGATGACGGTTTGGTCGATCCGGTCATAGTCAATTTAGGCCAGTTGGAAGAGGATGGCAGCTTTGAAATAACCATTGAAAATGATCCATTTGCTGGATCGGATGCAACTTCAGAAGATTTCAATGTACCACAAAGCAACAATTTAAGTCAGGATAAATTGACAGCTTGCAAAAGCAATAGCGGTCTGCCGGCCACAAACCGCTCTCCAAATAATCCAATCCACGACTCTAACGCAGAGTCAACCGACAAAGATTCCCGTAATACCTGCCACATTTGTCAACGACATTATAAAACGCGTTTCAATTTAAATCGCCATTTAAAGGTGCATGGCTCCAAACGTTTCGACTGCAAGGTGTGCAACATTGGCTATGACAACCGTAAAGAGTTGGTTGCTCATATTAAGGAACAGGGCCATGAAAAGCAGCTTGCATGTCCCCAGTGTGAACGGTGCTTTCAGACCAGCACTAATTTAATCGTTCACTTGCGACGTCATAATGGCGAAAAACCTTTTAACTGTCAGTTCTGCAACAAAGCCTTTCCATGTGCAAATGAGCGACGCGTGCATGAAAAGTACCATACCGGAGAGAAGAAGCACTCTTGCGATATCTGCAGCAAGCAATTTGTACGAAAATACGATCTGTCTCAACACTTGCTCGTGCACACTGGGGAACGTCCGCATAAATGTCCCCACTGTTCCCAAGCCTTTTCGCAGATGAACAGTCTCACATTACACATTCGTCTCCATACGGGTGAacgtttttattgtaaacacTGTCCTGCTAGATTTGTACAGCTCTATCAAATGCGCCAGCACAATATGGAATTACACGGTATTTGGAAGGAAACACCCATTTCGCGATTACCGAAATATAGAACGCCACGTGAACAGCAGGAACAAGTAAATCatctaaaacaacaacaacgacaggaGCACGGATTGCTGCATTTTGAAGAGCTCGAATGCAAAATTCAGCGAGCACGCGAGGAAATACTCTGTATGTTTGAAAATGCTGACACTGCAGCGTCACCATATGGAATAGAGTGGAGCAAGACTAAAAGTATCATAAGTGAGACTGAACGCAATTTGCAGTCACCAGACGTGGTTCCCATAGAAACTAATAAAGCTCAGCAAAATAGCGCTTTATCGGTTCAGGAATTATCTGGAGGAATCATTGATAGCTCCAGTGAAAATGATACAGCTAACCAACCATCAGACAGCAATGACTGCGCACAAACATTATCCAGAAAGTTGGCACTTGACCACGATGCTCGCCGCAATGATTTGTCcgaaaaaaagtttagctGCGAGTTCTGTAGTCAAAGCTTTGTACGCCGTGAATACCTAGAAGTGCATATTCGCACTCACACGGGCGCACGCCCGTACAAATGTAGCCTATGCGACGCCACATTTTCACAACGCTCCAATGCGCGTACTCATATGAATACCATACATCTCAAGCAGGCGAAATTTTTATGCGAAACCTGTGGCAAGTGTTTTAAACGTCGCCGACTGCTGGACATTCACATCAAGTCTGTGCACACACAGGTGCGTGATATTAAATGCAAGCAATGCGATGCCACATTCTGTCATTCAGCTTCGtataaaaagcatttgttATCCCATGCTGGCATCAAACCTTTCAGCTGTGAAGTGTGTGGCAAGCATTTTAGTCGCCAAGAGAATCGCAATGTGCATCGCTTTTTGCACAGCAATAACAAGCCATATACCTGTGGAGTTTGCAATGTTGGCTTTATGCGCAAAGCACAGATGATGATGCACATGGAAAACAGTCATCATGCAGGCGGTGAAATTGTGACTAACATTTCTACAGCCTGGCCGCGTACCACAACGCCACCCAATCTTTTATATCCAAACCACAAGAACCCACTGTTGCAGCCATAA
- Protein Sequence
- MATETQMVPIFNRYSTMEKNQPSLVTMLRQCTNCEIEQTDGLPQQICLKCAKATREAYNFKRLFIENDKLLRQPATSEASTSPLVQLKQIEKIIQSPKIKQQVLQDEQCQRHWGIKYKLPGIKKDDGLVDPVIVNLGQLEEDGSFEITIENDPFAGSDATSEDFNVPQSNNLSQDKLTACKSNSGLPATNRSPNNPIHDSNAESTDKDSRNTCHICQRHYKTRFNLNRHLKVHGSKRFDCKVCNIGYDNRKELVAHIKEQGHEKQLACPQCERCFQTSTNLIVHLRRHNGEKPFNCQFCNKAFPCANERRVHEKYHTGEKKHSCDICSKQFVRKYDLSQHLLVHTGERPHKCPHCSQAFSQMNSLTLHIRLHTGERFYCKHCPARFVQLYQMRQHNMELHGIWKETPISRLPKYRTPREQQEQVNHLKQQQRQEHGLLHFEELECKIQRAREEILCMFENADTAASPYGIEWSKTKSIISETERNLQSPDVVPIETNKAQQNSALSVQELSGGIIDSSSENDTANQPSDSNDCAQTLSRKLALDHDARRNDLSEKKFSCEFCSQSFVRREYLEVHIRTHTGARPYKCSLCDATFSQRSNARTHMNTIHLKQAKFLCETCGKCFKRRRLLDIHIKSVHTQVRDIKCKQCDATFCHSASYKKHLLSHAGIKPFSCEVCGKHFSRQENRNVHRFLHSNNKPYTCGVCNVGFMRKAQMMMHMENSHHAGGEIVTNISTAWPRTTTPPNLLYPNHKNPLLQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -