Basic Information

Insect: Chymomyza procnemis
Gene Symbol: -
Assembly: GCA_035046065.1
Location: JAWNOJ010000026.1:35592637-35599096[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.0014 0.097 13.2 5.6 1 23 201 223 201 223 0.99

2 28 0.19 14 6.4 0.2 2 23 298 319 297 319 0.94

3 28 3.5 2.5e+02 2.5 0.8 1 23 394 418 394 418 0.92

4 28 0.46 33 5.2 1.1 1 21 425 445 425 446 0.77

5 28 0.43 31 5.3 1.5 1 23 455 478 455 478 0.91

6 28 0.0031 0.22 12.0 6.1 1 23 485 507 485 507 0.98

7 28 0.0071 0.5 10.9 2.5 2 23 515 536 514 536 0.96

8 28 0.0014 0.097 13.2 0.2 3 23 564 584 563 584 0.97

9 28 0.046 3.3 8.4 4.7 1 23 623 646 623 646 0.93

10 28 0.02 1.4 9.5 0.7 1 23 683 706 683 706 0.96

11 28 0.00076 0.055 14.0 0.6 1 23 731 754 731 754 0.96

12 28 0.00095 0.068 13.7 2.6 1 23 765 787 765 787 0.96

13 28 4.9e-05 0.0035 17.7 4.3 1 23 793 815 793 815 0.99

14 28 0.00015 0.011 16.2 0.6 1 23 1026 1048 1026 1048 0.99

15 28 2.1e-06 0.00015 22.0 0.9 2 23 1056 1078 1055 1078 0.96

16 28 0.056 4 8.1 0.4 2 23 1111 1132 1110 1132 0.95

17 28 0.00022 0.016 15.7 3.7 1 23 1216 1239 1216 1239 0.97

18 28 0.026 1.8 9.2 3.5 1 23 1246 1268 1246 1268 0.96

19 28 9.4 6.7e+02 1.1 0.4 1 23 1276 1298 1276 1298 0.73

20 28 0.013 0.95 10.1 1.4 3 23 1307 1328 1305 1328 0.92

21 28 0.0031 0.22 12.1 1.4 3 23 1337 1358 1335 1358 0.95

22 28 0.0073 0.52 10.9 1.0 2 23 1385 1406 1384 1407 0.94

23 28 0.001 0.075 13.5 2.4 1 23 1448 1471 1448 1471 0.95

24 28 0.014 1 10.0 0.4 2 23 1509 1530 1508 1530 0.96

25 28 0.0012 0.086 13.3 3.5 2 23 1552 1574 1551 1574 0.95

26 28 0.00035 0.025 15.0 0.3 1 23 1589 1611 1589 1611 0.96

27 28 0.00016 0.011 16.1 1.0 1 23 1617 1639 1617 1639 0.98

28 28 7.6e-07 5.4e-05 23.4 1.2 1 23 1645 1667 1645 1667 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.0014	0.097	13.2	5.6	1	23	201	223	201	223	0.99
2	28	0.19	14	6.4	0.2	2	23	298	319	297	319	0.94
3	28	3.5	2.5e+02	2.5	0.8	1	23	394	418	394	418	0.92
4	28	0.46	33	5.2	1.1	1	21	425	445	425	446	0.77
5	28	0.43	31	5.3	1.5	1	23	455	478	455	478	0.91
6	28	0.0031	0.22	12.0	6.1	1	23	485	507	485	507	0.98
7	28	0.0071	0.5	10.9	2.5	2	23	515	536	514	536	0.96
8	28	0.0014	0.097	13.2	0.2	3	23	564	584	563	584	0.97
9	28	0.046	3.3	8.4	4.7	1	23	623	646	623	646	0.93
10	28	0.02	1.4	9.5	0.7	1	23	683	706	683	706	0.96
11	28	0.00076	0.055	14.0	0.6	1	23	731	754	731	754	0.96
12	28	0.00095	0.068	13.7	2.6	1	23	765	787	765	787	0.96
13	28	4.9e-05	0.0035	17.7	4.3	1	23	793	815	793	815	0.99
14	28	0.00015	0.011	16.2	0.6	1	23	1026	1048	1026	1048	0.99
15	28	2.1e-06	0.00015	22.0	0.9	2	23	1056	1078	1055	1078	0.96
16	28	0.056	4	8.1	0.4	2	23	1111	1132	1110	1132	0.95
17	28	0.00022	0.016	15.7	3.7	1	23	1216	1239	1216	1239	0.97
18	28	0.026	1.8	9.2	3.5	1	23	1246	1268	1246	1268	0.96
19	28	9.4	6.7e+02	1.1	0.4	1	23	1276	1298	1276	1298	0.73
20	28	0.013	0.95	10.1	1.4	3	23	1307	1328	1305	1328	0.92
21	28	0.0031	0.22	12.1	1.4	3	23	1337	1358	1335	1358	0.95
22	28	0.0073	0.52	10.9	1.0	2	23	1385	1406	1384	1407	0.94
23	28	0.001	0.075	13.5	2.4	1	23	1448	1471	1448	1471	0.95
24	28	0.014	1	10.0	0.4	2	23	1509	1530	1508	1530	0.96
25	28	0.0012	0.086	13.3	3.5	2	23	1552	1574	1551	1574	0.95
26	28	0.00035	0.025	15.0	0.3	1	23	1589	1611	1589	1611	0.96
27	28	0.00016	0.011	16.1	1.0	1	23	1617	1639	1617	1639	0.98
28	28	7.6e-07	5.4e-05	23.4	1.2	1	23	1645	1667	1645	1667	0.99

Sequence Information

Coding Sequence: atgagcaaaatatgCAGAACTTGCTGCAGCAGACACTCGAAAATGTTTTACGCGCTGGACACTTCACAGGAGCACAACTATGAGAATAAAACACTTGGTCAAATGCTGCAGGAGCTGATGAGTGTTGAGTCAACAGAgcaatgcaaaaaactttcttCGTGGATTTGTGGCAACTGTTGtaggaaattgaaaaatgcttatgGCTTTGTGCTGCAAGCGCTCAAGGcacaaaaatatctattacAGGAGAGCTTAGCCAGCACAGAGCACGGCAAGCAAATAGATATAGATGAGGATTGTCTAGATGAAACACCAGTGCCTATGCAATTGGATGATAGCATCGATAGCAGCACGCCTTTGTTTGAAGATTCTTTGGTAAACATTAAAGTGGAGCAAATACTAGAAGCTGATGATACTGTAGAGCCCAGTTCCCCTCAATCAGTTTCTTACGATCCTTTGGTGCCAAAACTGGAAATGGCCGCTGACAGCAATACTAGTTCTgaCGATCTTGATGATATTCCACTTACAATACTTAAAcgcaaagaaattaaaacaagagCTTTGAAACAGAGTACGCTTGATAGCGCCTCAAAACCGCCCTATAAATGCGAACAGTGTTCCAAATCctacaaatatttagaatGCCTGCGAAAGCATGCTAAAAAACATGAGAACAATGAACAATTTGTTGAACAAATTactaaattacaaaatgaacGTAGTGCAGATAATCAATACGAAGCCAAAAATATAGAGCAACAAAGCAAGAGTAACGcggaaaaagttaatttaactCAAAGTAATCCAAAGAAAAAACGCGAGAGACTTAAAGATGTAAGATTTactgattttaatttacaactgTGCAAACCCAATGGCTGCAAGACGATTAAATGTATGATTTGTTTGCTTGATTTTGCAAAACTCTCAGAGCTGCGTAGTCATTTCGATGTACATCCAACGAACATAGATTTTGAAGCACATGGCCATCCCATAGGACGCATAGCAGAGGGATTCTATAGAAATGCAGTAGAGTCCACAGCAGAGGGTCTAAAGAATCGCATTCTAAATGATCTAGATGATCGAAATTATTCACGTTATTATTCTATAACAAATGAAGCTGGCTATGAAATGAGTTTGGATAGTTCCGACACGGATGGTGATGAGGAGCACAAAAATTACACTTGTGACCTATGTCCGGCAAAAAGCTGGCCTAGAAAATACCTGCTCTTTGAACATCACAAAGCAACGCATAGCTGGATTGAAGCGCCCCATCCCTGTCGACGTTGCGGAGCGCGATTTCTAAATTCGAACCTGCTCTCACATCACTTAAATACGCAATGCTATAATGCTCTGAAGCGTTATCGCTGCGAAAAATGTCCATTAAGGTTCTTTTGGCGGCAGAACCtttataatcataataaacTAGAGCATAAAAACAAGagagaaaattttcaatgcgACAAGTGCCCACGCTGTTTTCTTAACCAGCATTCCTACACCAGGCATATGTTACTACACGAGGAAACTACAAAACTCATACCCTGCCGTTGGTGCACGCGCAGTTTCTATCGTCTGGGGCTGTATCATAAACATTTGAAGCGTCATGGTCTTGAAGCAGCAGACATACCATTGGCTGAGACTTTGCTAATGGCTATGGCTAAGACAGTTGAGCCAAAGactattttatgtaaattatgtGATGTTACATTTGATTCCCTGGATGACTTACGCAGTCACATAGGCATGCATCCAAAGTCGCACAACAATGCACCTAGCAATTATATAATAGCCACAAATGCCGGTATAGAGATTGACTTGAACGATACGGAttgtgaaaataatgaaactgGTTTTCCCAAGTCATACAAATGCAATCTTTGCGGAGTAACGTGTAAACACAGACATGACATGCTGGAGCATCAGTATGCAATACATACTTTTGAGAAAATGCCTTTTTCCTGCGAagattgcatatttaaaagtgTCGATAAGCGCATTATGGACTATCATCAACGCAGTCAATGCTTAAATAAGGAAAAACCATTCAGCTGTCCGCaatgtaaatacaaatttcaatggGAAGAAAATCTGCAGCTGCATCTAAGTACATTACATGCGGACACGCCAGAAACTGCTGTCAACAAAGTGAATAAGGTGAAAACCACAGAACTAAGTGAGcgttacaaatttaaatgtcCACATTGCGTACGCGCATTTGTACTACAAATAAGCCTTGATAAGCATATACGTGATATGCATGTTGTTAAAAGATTCGCCAATAATAAGGTATATCTATGCTCTTTATGCGGCTTAAAGTGTACATCACAAAGCAAACTGGACATACATATGAAACGTCACAACAAGATAAAACCATTTAAGTGCGATCACTGCGATATGCGCTTTACGGTCTTTTACGAATTAAAAGTACATCAACGCAAACATACGGGTGAGCGACCATATCACTCGAAGCAGGCAAACATGCACTggttgcaaaaaatacaaccaaTACCACCGCTgcattattttacaaataccAACGACGCGACGAGCTGTACGCAATTGCGTATAAAACATGAAGTGGTTCTGACAGAGGAGCAAACCGAATATGCCATTGAAAGCAATCTACCAACACAAGAAGGTGACTGTTGCCATAGCATAGCCCCGCATGATCAGCAAAGCCCCAAGCCCATGTTTGTAATACGCAAACTATCCAACACCGATTTGGAAATATGTGATTCTGTAACCCATGAAAACTCTAGCTTCACTAGAGGTTGCCCAATTAATACACTGTCAACTGGCATGGACCATGCCGCCGACTACACACAAGATACTTCCAGTCGCGTTTCTAATGCTACAAGCGACAATACAACACTTTTGGATTTACCTATTGAAACTAATGACGAAGTCCTGGATGACATGCCACTGAAAGAAGTGCAACTATTATTGCGCAGCCAGCAAGCAGCTACAATTGATCCCTTAGCAACTAAGCAAACGGAATTAGTTGACAACAAACACGCATCAGCGGACGTAAGTCACTCAAAACCGTATGCTAGGGAAACTACAGGTAGAGAATACAAATGCACTCAATGTGATAGATCCTACAATTGGCCAGCGGGCCTCAAAATGCACATGCGCAAGCACACGTCCAAAAGCGAATGGCTAACTTGTCCAGATTGTCCTCAAAAGTTCTATCGCAAGGACAACATGATGGCGCACATGCGTAAAAAACATGGCGCTCCCAAAGCATCCAAACGCTCTGGTTCAACGCTAGCTAAGATAACAGAGCTGGACATAAACTTGTGTCTGCCAAATGGAGTCAAGCAGATAAAGTGCATGCTCTGCTTGCAAAGATTTGAACGCATTTGGCAACTGCGTAAACATCTGGAAGAGCATGCCAGCAATGTTAAgcagtttaaaatttctaacGAAGCCTTAAATGAACTTGCTGGCAGCTTCTTTGCCAACGTAAATGATATTgacaaaaatgaattgaaagaACGCATAGCAAACTGTCTGGCGGTGCAAAACTATGAACGCTTTTACTCAATTACAAATCAGGCTGGACGTGAATTGAGCTTGGATAGCTCGGAAACAGAAAGTGACTTTGAGGAAGAGTCGAGCAAAAGTATTAAAGATGAGCGCTACGTCTGCGAGCTGTGTCACAGCAGTTTTTCGCGGAAATATCAACTCTATGAACATCAGCGACAACAACATGCCTGGTTGGATGCGCCGCATGTCTGCACACGCTGTCACATGCGGTTTGTGAGCTCCCAACTGCTGACGGTGCATAGCATTAGGCATTGTCATAATATGCTAAAGttgtatatatgcaaatattgtcGAGCACGTTTTCTTTGGCGTCAAAACTGGAGTGCACATTATGCCACTCACAGAGATAAGAATAGCCTAGTTCATTGTGAGCAGTGTAATCGCAGCTTTCGCGATGTACGTGGTCTTAATTCGCACAATCTGAGCATGCATGCCGATAAATCTCAATTCCTGGACTGTAGTTGGTGCAGCCTGAAGTTCTCCAATCGGGATTTTCTGcttaaacatttgcaaaaacgTCATGCTATGAAAGCAGAGCATTTGCCACTGGCGCAGACACATTTGGCAGCGTGTGCCGAGCCAAATGGTCAAAAGCTTATACGCTGCAAAGTTTGCGAATTAACATTTGGCCGAATTCGTGAATTAAGGCTACATCTGGCAAAGCACCACATCAATTTACAGCGCAGTTACGATGCGCCATTGAACTATTCCATAAGCAATGAAAAAGGATTTGAGCTGGCACTAAACGACAGCGATACTGATGAAGAAAGCGAAGCATTAGAAGTTAGATACACCTGCTCCCTGTGTCAAGTGCAATGCAGGCGGCAGTACGAACTGCAGCGGCATCAGCTGGCACTACATCCTTACGATGCACTGCCGCATAGCTgcagaaaatgcatttttaaatgcgCCGCAAAGCGCATACTGGAACGTCATGAGCGTAGCcaatgtttaaataaagataaaaagttAAGCTGCACCAGCTGTGGATACAAGTTCATGTGGCAGGAAAATCTTGAACTTCATCAACGCCTACACAAGGCATCCAACGACTTGATGAAGTCAACGGAGCAAATAGCACTGACCAGCGCTAAATTGCTAACTTGTCCTCACTGTGAACGCACTTATAAGCACAACACGCGTCTGAGCAATCATATACGCGATGTGCACAGCCAAGAGGGACAACAAAACAAGCCCAAAGAGCCAGGACGCTTTTTGTGTTCCCAATGCGGCGTAAATGTGCGTTCCAGAGGAGAACTGCAATTGCATATGAGACGTCACAACAATGACAAACCCTTTAGTTGTGACATGTGCGATATGGCGTTTGTTTCCTTCTTCGAGCTAAAAATTCATCGCCGAAAGCATACTGGCGAGAAGCCTTACCAATGTACAATGTGCCAAAAGTCATTTGCGCGTTCCGATAAGTTAAGAGTGCACCAGGCCACGCATaggaataaaaaaaccaagctGCAAGCGTCCAAATAA
Protein Sequence: MSKICRTCCSRHSKMFYALDTSQEHNYENKTLGQMLQELMSVESTEQCKKLSSWICGNCCRKLKNAYGFVLQALKAQKYLLQESLASTEHGKQIDIDEDCLDETPVPMQLDDSIDSSTPLFEDSLVNIKVEQILEADDTVEPSSPQSVSYDPLVPKLEMAADSNTSSDDLDDIPLTILKRKEIKTRALKQSTLDSASKPPYKCEQCSKSYKYLECLRKHAKKHENNEQFVEQITKLQNERSADNQYEAKNIEQQSKSNAEKVNLTQSNPKKKRERLKDVRFTDFNLQLCKPNGCKTIKCMICLLDFAKLSELRSHFDVHPTNIDFEAHGHPIGRIAEGFYRNAVESTAEGLKNRILNDLDDRNYSRYYSITNEAGYEMSLDSSDTDGDEEHKNYTCDLCPAKSWPRKYLLFEHHKATHSWIEAPHPCRRCGARFLNSNLLSHHLNTQCYNALKRYRCEKCPLRFFWRQNLYNHNKLEHKNKRENFQCDKCPRCFLNQHSYTRHMLLHEETTKLIPCRWCTRSFYRLGLYHKHLKRHGLEAADIPLAETLLMAMAKTVEPKTILCKLCDVTFDSLDDLRSHIGMHPKSHNNAPSNYIIATNAGIEIDLNDTDCENNETGFPKSYKCNLCGVTCKHRHDMLEHQYAIHTFEKMPFSCEDCIFKSVDKRIMDYHQRSQCLNKEKPFSCPQCKYKFQWEENLQLHLSTLHADTPETAVNKVNKVKTTELSERYKFKCPHCVRAFVLQISLDKHIRDMHVVKRFANNKVYLCSLCGLKCTSQSKLDIHMKRHNKIKPFKCDHCDMRFTVFYELKVHQRKHTGERPYHSKQANMHWLQKIQPIPPLHYFTNTNDATSCTQLRIKHEVVLTEEQTEYAIESNLPTQEGDCCHSIAPHDQQSPKPMFVIRKLSNTDLEICDSVTHENSSFTRGCPINTLSTGMDHAADYTQDTSSRVSNATSDNTTLLDLPIETNDEVLDDMPLKEVQLLLRSQQAATIDPLATKQTELVDNKHASADVSHSKPYARETTGREYKCTQCDRSYNWPAGLKMHMRKHTSKSEWLTCPDCPQKFYRKDNMMAHMRKKHGAPKASKRSGSTLAKITELDINLCLPNGVKQIKCMLCLQRFERIWQLRKHLEEHASNVKQFKISNEALNELAGSFFANVNDIDKNELKERIANCLAVQNYERFYSITNQAGRELSLDSSETESDFEEESSKSIKDERYVCELCHSSFSRKYQLYEHQRQQHAWLDAPHVCTRCHMRFVSSQLLTVHSIRHCHNMLKLYICKYCRARFLWRQNWSAHYATHRDKNSLVHCEQCNRSFRDVRGLNSHNLSMHADKSQFLDCSWCSLKFSNRDFLLKHLQKRHAMKAEHLPLAQTHLAACAEPNGQKLIRCKVCELTFGRIRELRLHLAKHHINLQRSYDAPLNYSISNEKGFELALNDSDTDEESEALEVRYTCSLCQVQCRRQYELQRHQLALHPYDALPHSCRKCIFKCAAKRILERHERSQCLNKDKKLSCTSCGYKFMWQENLELHQRLHKASNDLMKSTEQIALTSAKLLTCPHCERTYKHNTRLSNHIRDVHSQEGQQNKPKEPGRFLCSQCGVNVRSRGELQLHMRRHNNDKPFSCDMCDMAFVSFFELKIHRRKHTGEKPYQCTMCQKSFARSDKLRVHQATHRNKKTKLQASK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -