Cpro004046.1
Basic Information
- Insect
- Chymomyza procnemis
- Gene Symbol
- -
- Assembly
- GCA_035046065.1
- Location
- JAWNOJ010000013.1:18179216-18180754[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5e-16 7.4e-13 48.0 0.0 2 44 343 385 342 386 0.94 2 3 0.06 90 2.9 0.0 28 37 416 425 415 430 0.89 3 3 1.4e-19 2.1e-16 59.4 0.0 2 42 452 492 451 494 0.95
Sequence Information
- Coding Sequence
- ATGGGCCATTCATCCACTATTATGGATATACAACGCGCTTTGCGCAATGACAACGATACTTGCGAAGTGACGCTAGTTGCAAAAGATGGCATCAATGTACGGGCTCATCTTTTTGTGCTCAGCACTTGCAGTGACTTAATGCGTAATTTGCTGGTTGATGTGCCAGCGGGTCATGAGGCTACCATTGTATTACCCGATATACGTGGAAGCCTTCTGGAGAGCATGTTATCGTTTATTTACATGGGCGAAACCAGCCTACCCTCCTCCTGTCTCACAGAATTCCTTGAAGCTATAAGCTTGTTGGGCATTAAATCGGCCATTAGTTTCGAGTGTAACACGAGTGCCAATAATAACCTAAATGTCGTGGCCAGTAACGTGGCTATAGAGGCGGCAAAGTCCATTAGTGGCCTGCAAATTGCACAAACCGAACTAATGGAAGATGACGAGGAGGATCCTAATGGTGTGGTAGCCAAATTGTCGGTTTCCAATTCAGTTTTGTCAGGCCAACAGCAAATACATCAGACACAAGGGTCGCGAGCAATAGAATATATTGATGTTTACAATACTCAGCCAAAGATAACGTATTCTATTGAACATATGAGCGGCACACAGAATGGAGATCAATATATTCTCACTGAAAACACCGGAACTTTCACAATCACACAATCGGCTACACCTGTGAGCAAATTAGAGGTCTCTTCTGGCACTGTGTCGGAAGTTGGACATTCCAATGTATCTCACGGTATGGTTGAAGATGAAGTTGAAGGCGAAACCACGGAAGACGTAGAGGAatcaaatattgaatatattacaCCGTCGGATCCTCTAACAGATATGCACACAGAAGTCGACATAGGCAATGATGACGATGGCATGCCAGAAGGTGAAGTTGAAGACGATATGCTTGACATAAAGCCACGAAAATccgaattaaaaataagagcaCGTAAATTGGTAAAAAAGCTTACAAACAAGCAACAGCATCAATTTACTACGCTTAAAAGCGAAATAAAGACTGGAAGCGGAAATGAATCACTCGATTTAGCTGCTCAAGCTGTGCTACATGAGGGGCTAAGTTTGCAAAAGGCTGCCGATCGATTTGATATATCTAAAACTGTTCTTTGGCGACGTGTGCGTACCAATCCAGATTATATGAAACACAGTCGGGAAAAACCTTCACTAACAGAGGCCTACGAAAGATTGAAAAACGGTGAttcactaaaaaatataagtcaAGATTTGCAAATTCCCATGTCCACATTACATCGCCATAAGGTTCGCTTGGCTGCTCAAGGACGCCTGCCAGAATTTGTATCGTGTCGAAGGCGCGATACCACGCCAAAGGATGAGTTACGCGATAAGCTAGCCAAAGCTGTACATGCTTGTCTTAACGAAGGAATGTCACAGAACCATGCGgcaaatctttttgaaatacCCAAGAGCACGTTGTGGCGTCATTTGCAACGGCGTGTAGCCGAATCGGGTCAAAAAGTAAAACGGGAGGAGGAGCCAGTCGACGAAGATGACATGCTCAATTAA
- Protein Sequence
- MGHSSTIMDIQRALRNDNDTCEVTLVAKDGINVRAHLFVLSTCSDLMRNLLVDVPAGHEATIVLPDIRGSLLESMLSFIYMGETSLPSSCLTEFLEAISLLGIKSAISFECNTSANNNLNVVASNVAIEAAKSISGLQIAQTELMEDDEEDPNGVVAKLSVSNSVLSGQQQIHQTQGSRAIEYIDVYNTQPKITYSIEHMSGTQNGDQYILTENTGTFTITQSATPVSKLEVSSGTVSEVGHSNVSHGMVEDEVEGETTEDVEESNIEYITPSDPLTDMHTEVDIGNDDDGMPEGEVEDDMLDIKPRKSELKIRARKLVKKLTNKQQHQFTTLKSEIKTGSGNESLDLAAQAVLHEGLSLQKAADRFDISKTVLWRRVRTNPDYMKHSREKPSLTEAYERLKNGDSLKNISQDLQIPMSTLHRHKVRLAAQGRLPEFVSCRRRDTTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRRVAESGQKVKREEEPVDEDDMLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339288;
- 90% Identity
- iTF_00338513;
- 80% Identity
- iTF_00339288;