Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: ci
Assembly: GCA_949987675.1
Location: OX465092.1:5077547-5089342[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.002 0.21 12.7 1.2 3 23 451 474 449 474 0.94

2 5 4.7 4.9e+02 2.0 0.1 8 22 494 508 482 508 0.80

3 5 0.0025 0.26 12.4 2.8 1 23 515 539 515 539 0.95

4 5 0.00039 0.041 14.9 0.4 1 23 545 570 545 570 0.97

5 5 1.6e-05 0.0017 19.2 0.3 1 23 576 601 576 601 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.002	0.21	12.7	1.2	3	23	451	474	449	474	0.94
2	5	4.7	4.9e+02	2.0	0.1	8	22	494	508	482	508	0.80
3	5	0.0025	0.26	12.4	2.8	1	23	515	539	515	539	0.95
4	5	0.00039	0.041	14.9	0.4	1	23	545	570	545	570	0.97
5	5	1.6e-05	0.0017	19.2	0.3	1	23	576	601	576	601	0.96

Sequence Information

Coding Sequence: ATGTCTGAAACACTCAGGATGAGTTctaaggtagaggagtctataaAGTACTCAGAATTACAGTTCCTCGCTTCAAGGCGTGCGGCAGCAGTCGCAGCTGCATCAACTGCACTATCAAGTTCACCCAAAAACAATATTTCTACAGATATTCACAACAGAGTTGCTTTGCCGCAAGAGACTACATTGGCGACTGCTTCTCCAGACACTGCCATCTCCACACCAGCGAATGATAACATAAGCGTATATGCGAATACAAATGAGAACTCCCAGTCTCTCCTCAGAAATACAAgccatcaccatcatcatcaacataTCCATGGTAGCCTAGCAGCTATTGCAGCCCAGCCACCACACGATTTTCATCCAGCCTACAGAGTTCCTGGTTATGTGGATCAATTTTACTCATTGCAACGAAGCAGCCCCAACGCGTCCTATCACGATCCTTATGGAAACTGTACACCAAATTTTCATTTAGCGGGACTTGGATTAGGATCTGGTGATTATTTAAACGCAAGTAGTATTGGATCCTTAAGTGACTTGCATCATGCGGCTGCGGCAGCTGCTGCTGGTTCTTTGGCGAGTACTGATTTTCATTTAAGTTTCGACGGAAATGGGCGGATAAATAGCCCTCGCAATGGCACAGGAAGCATTCGAGCAAGCATTAGCCGAAAACGTGCATTGTCGTCGTCGCCATACTCCGACTCTTTCGATATTAATTCTATGATTCGTTTCTCGCCCAATTCCTTGGCCACAATTATGAACGGTTCACTCACGAGCAGTGCAGCAAACGGATCATACGGTCATTTATCTGCAGGGGCAATTGCTCCCTTAGCCCACAGTGCGCATTTGCAGCAGTTACAAGCTCACTTGTTGCGTGCTAGCGCTGGGCTGCTTCATCCAATGTCAACACATAATGCACCAACTGCAAACTTTTCTATAAACCAAGCAAATGCTGCTGTTATTGGTCTAAGTGAATCTAGTATACTCAATAAGGAACTAATAACAAGCAATCAAATCTCCGAAGTTGAAAAAGATTCCAAGCACTTGAGCTCTAATAAGCATTATGATGATTGCAAATTGCGATCAGGAACTGACAAGCTAATGGAGCAACCATCATCTACATCTGATAGTGTTGCACAAGTTGAAGCCGATAGCGCATCTGCAAATCTGCTAGATGGGAGACAACAAAGTAGAGTTTCTGGAAATTTATTGAATAGCCGAGCCCAAACGGCTAGGCTGGATCCTCAGTTTGCTCCAACGACAACATCCGCTCCGGGTAATGATTTCGAATGCCTTACTGCAGACACAACTGACATCAAAGATGAGCCAGGAGATTTTATTGAAACCCATTGTCATTGGCGAAATTGCGGTATTGAGTTTATAACCCAAGATGAGCTTGTGAAACATATAAACAACGACCACATTCAAATTAACAAGAAAGCATTTATTTGCCGTTGGGACAATTGCTCTCGTGGAGAAAAGCCGTTTAAAGCCCAATACATGCTGGTGGTTCATATGCGCCGTTACACCGGTGAAAAGCCTCACAAATGCActTTTGAGGCTTGCTACAAGGCTTACTCTCGTTTGGAAAACCTTAAAACACATTTGAGGTCACATACCGGTGAAAAGCCATATACGTGTGAGTACCCAGGCTGCAGCAAGGCTTTCAGTAATGCTAGTGATCGCGCAAAACACCAAAATCGTACTCATAGCAACGAAaagCCATATATTTGCAAAGCACCCGGATGTACAAAACGCTATACCGATCCCAGTTCTTTACGTAAACATGTAAAAACAGTTCACGGCGCAgagttttatgcaaataaaaagcaCAAGGGCTTGCCGCTTCACAATACTAGCTCTGACTTTGATAATAATCATCAACGAAAACGTCATAATCAAAGCTCGATACATTTGCAAGAACAACATCACCACATAGATTCCAGCCCTTGTAGCGATGAAATTTATTCCGGCAAAGCAACAAGTATATCCAGCCCCAGCATTAAATCTGAGTCTGATGCAAACTCTCCTCACCAACAAAACACTGGTATTATGCATGGAGCTGCTAGGAATCGTCTCATTACTTACACACAAGAAGATTATTCATCCGAGTGTATCCCTGGGTTGGACGACGTTTGGGCCTACGATGACGATGTCGACGCGGTAGACCTTCCCATTGTTTTGCGTGCCATGGTAAATATTGGCAATGGAAGTAGTACAGGCGTAGGATCTGAAAGCAGTGCAATGGTACGTCAGAGGTTTCGCAGTCGTCTGCAGACAAAGGGCATAAGTTCTACCACATCGACGCTTTCTAACATACCAGAAGTTAATAGGGTCATTGGTATAAGTGAGTTGAACCAACGTATAACCGAATTAAAAATGGAGCCTGGTACTACCTCACAAACACCAATTTCCTCACCACAACCTTCAGACATAAAAGATCTTCTTTTGTCTGATATTAAAGGCCGTGCGCAGCACCAAATCACTGGTCAGAGTTACGACCAAAACAATCAGACCTTGCATTCACAGTCCCAAATACGCCGCGACAGTCAAAACTCTAACGCGAGTACTTATTATTGCAGCATGCAAAGTCGTCGGAGTAGTCAATCATCACAACTTTCTTCAATATCAACAATGCGACCTTTATACAATGCGTCTTCCTTATATGATCCCATATCCCCGGGAGGTTCTAGGCGATCCAGCCAAATGTCAACTATACCGTCTGCTCACAGTGCAGTGGCTGAATCAAATGTTCATACTGCcgcaaacattttgaaaagtgggGCTGGTGACTTAGGGACTTGCCAATATTTTAGCGTTCATAATAAATGTCTTCCGCCGCCGCCTTCATCACATCTTGTTGCTACACATCTACAAAGACTGCAATCTGATGTAACTTATCAACAAAAGCCGGCTCACTACGACGGACGCTATTCCATCCCAAATAGCTCGCCATCTCACATCATTAGGAATCTGCATCAAACAGAAACTTGTAAGACAACTGCAAGCGGAATTTGTCGACGTCAATCGGAGCCAGTTACTTCGCAAGCTAGTGAGCTTCTTGTTACATCTCCTACTTTATTTACTACCTTACATAACATGCGAAACCCATATTCTCGAATAAGGGCACCTCAAGAGACTAATTCAGCAACTATTGGCTGTAATATTAGGGAAAACGGTATTAAGAATCATAACGATGCgattaataatacaaataaaataggTACACCGCAAGAGCAGCATCCCAATGAAAAAGTTAATCTTGATCAAGTTGAAGAGGACGAGCTTATAGAAAATATTGAGAACTTATTATTGCCTGATGAGATGCTACAGTACCTCAGCTTAGTACAAGACGTTGATAAACCTGTTCAAAACGAACGGGATGCATCGATAATTCCTTCAGTTGCTACTAATAATGGAGTCGTTGGCAACCAAGTAGGAGGCGCAATAGCGCCTTTCGAAAGTGGGTCGATACATCTTCCTTTATCTGTTTCAACGATGGTATCACCCCATTCGGAGCCCAATATATCTGTCCTTGGGAGTCCATACTCGCAACGAAATATTGTGTCCAATGTTCAGGAACAAActtttcaatgtaatacaacgTATTTTAGAGACAGTGACTTTAACAGAACCCTTACGTCCCGTATTGTTAGTTGCGACCTTCAGACACAAGGATTGAGCCAACATCAAATTTTAGATTCTTCCATGACAAGTCTACATGAGATTCCAATATTGACAAACCCAGGGATCTCTTTTAGGCATCACAACAGCGATTCCGATCCTATTACTAACAATGGAAATGAAATTCAATGTCGTATTATAAGCCAATCACAAATTTCACCTGCTATACATCTTAATTGTTCGAAAGTTACACAACTGCgggttggcaaaaatcctatagctgaaccctccacgagggtgccgactgAGAGACCTAAGGAGGACTCCAAGCAACCAAAGCGACAACGCTCAATTGAGACCGCAGCCCCAAATGCTCCAAAGAGAGCTAGGGCGAATACTCATGTGGTCACCAGAAGCTTTGCAGAAATAGCAAAGGAAAAGATTCTTTTGGGGGTCTTAGACCAAGGAAATTCCGATGGTAGGATCCCAAAAAATCAGTGGAAGTGGgtagaggcagcactggctgttcaCTGCTTCGAGGTGCTAGAGGCGGATCCAGGGCCACTACCAGTCTGTAAAGACGTCGGGTGGTACCAGGGAAACGTTAAAGTAATTGCCTGTGAGGGTGTTAGGTCGGCAGAGCTCTTCAAAGCGGCCGTTCTAAGAGTGGGCGAGGTCTACCCGGGCGCCAATCTTGTTGCAGTAGATTGGAAGGACACGCAGTCCCCAATGAAGAAGATCCTTCTGATCCTCAATAAGGATTCGCTGGCTCCGATAGACGCGaagcacggagagctaaacttcggttttagctcggtgcaaaTTCGAGTCTACAAATCGGATGCCAAGCAGACAGAATGCTCGGAATCTATGGAGGCACTGGCCTCAGAGATAGAAGAGCCGGAGAAAGATCCCGAGGTCGAGGACTGcgagtcggtgatgtccgatgcgTCCTTGGTCAGGGGCCTCAATGCGCTGTGtcaggagagtgctgactccgctgatgaaaGCATCACCACCGCTGCcctaatgcttcgcctggcTGGTGGCGAAGTTGATCTGGTGCTGATACAGGAACCCTGGATTATATCCAATAGGGTATCCGGACTCAGCACACGAGAGTATAGGCTGTTTGCAGCCCAAGAAGAAGGTAAAACCCGTACCTGCATATTGGCAAAAAAGAACCTCAGTGTATTTTTGCTTTACAACTACAGTGACGGGAACACTACATCGGTAAGTCTGGAACTCCAGAGCAAACCGATCCGGTTAGTGTCGGCATACCTGGTTCATGATATCCTGGACCCTCTTCCGGGTCATAAACTGCGCCAACTGATCAAGGACAGTGAAGATCTTGGCACTGGCCTACTGGTTGGATGCGACGCAAATGCCCACCATGGACAATGGGGGAGCTCTAACACAAATGTGAGAGAAGCTGCAAGACTTCGCAAAATTCTCTCAAAGTCGCCCACAAATTTGGGCTATCTTAAGAAACCGGATGACTCCTGGACAAATTCCAGCGAAGAGTCACTAGAACTACTCCTGGACACGCACTTTCCTGGTAGTTCAACAGTTGCACCAACATGCAACCCCTCCTACCTCCCGCGCCTGGATCTAAGTCATTCAAAACATTTAGAGGTACAATCAACATCTACACAATTTGATTCTAAGCTCTTACCAGCGAATTCAAAAACAAGTGTCGAAGATCACAGCGGCGAAATAATGCACTTAGATACTTATCAGCGAACACTAGAATATGTCCAAAGCTGCCAAAGTTGGATGGAAACCAACAATGTTGTCTGTGGTCAATCAATAGTTAACACCAACGTGCCTAAACCAAATACCGACAACAACTCGTTGTGGCCATCGGTTTCCAGTTCGACTCACCCTAACGCAAATATGATTATCAATGACATGACCACATCCCTgatcaattga
Protein Sequence: MSETLRMSSKVEESIKYSELQFLASRRAAAVAAASTALSSSPKNNISTDIHNRVALPQETTLATASPDTAISTPANDNISVYANTNENSQSLLRNTSHHHHHQHIHGSLAAIAAQPPHDFHPAYRVPGYVDQFYSLQRSSPNASYHDPYGNCTPNFHLAGLGLGSGDYLNASSIGSLSDLHHAAAAAAAGSLASTDFHLSFDGNGRINSPRNGTGSIRASISRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSLTSSAANGSYGHLSAGAIAPLAHSAHLQQLQAHLLRASAGLLHPMSTHNAPTANFSINQANAAVIGLSESSILNKELITSNQISEVEKDSKHLSSNKHYDDCKLRSGTDKLMEQPSSTSDSVAQVEADSASANLLDGRQQSRVSGNLLNSRAQTARLDPQFAPTTTSAPGNDFECLTADTTDIKDEPGDFIETHCHWRNCGIEFITQDELVKHINNDHIQINKKAFICRWDNCSRGEKPFKAQYMLVVHMRRYTGEKPHKCTFEACYKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLHNTSSDFDNNHQRKRHNQSSIHLQEQHHHIDSSPCSDEIYSGKATSISSPSIKSESDANSPHQQNTGIMHGAARNRLITYTQEDYSSECIPGLDDVWAYDDDVDAVDLPIVLRAMVNIGNGSSTGVGSESSAMVRQRFRSRLQTKGISSTTSTLSNIPEVNRVIGISELNQRITELKMEPGTTSQTPISSPQPSDIKDLLLSDIKGRAQHQITGQSYDQNNQTLHSQSQIRRDSQNSNASTYYCSMQSRRSSQSSQLSSISTMRPLYNASSLYDPISPGGSRRSSQMSTIPSAHSAVAESNVHTAANILKSGAGDLGTCQYFSVHNKCLPPPPSSHLVATHLQRLQSDVTYQQKPAHYDGRYSIPNSSPSHIIRNLHQTETCKTTASGICRRQSEPVTSQASELLVTSPTLFTTLHNMRNPYSRIRAPQETNSATIGCNIRENGIKNHNDAINNTNKIGTPQEQHPNEKVNLDQVEEDELIENIENLLLPDEMLQYLSLVQDVDKPVQNERDASIIPSVATNNGVVGNQVGGAIAPFESGSIHLPLSVSTMVSPHSEPNISVLGSPYSQRNIVSNVQEQTFQCNTTYFRDSDFNRTLTSRIVSCDLQTQGLSQHQILDSSMTSLHEIPILTNPGISFRHHNSDSDPITNNGNEIQCRIISQSQISPAIHLNCSKVTQLRVGKNPIAEPSTRVPTERPKEDSKQPKRQRSIETAAPNAPKRARANTHVVTRSFAEIAKEKILLGVLDQGNSDGRIPKNQWKWVEAALAVHCFEVLEADPGPLPVCKDVGWYQGNVKVIACEGVRSAELFKAAVLRVGEVYPGANLVAVDWKDTQSPMKKILLILNKDSLAPIDAKHGELNFGFSSVQIRVYKSDAKQTECSESMEALASEIEEPEKDPEVEDCESVMSDASLVRGLNALCQESADSADESITTAALMLRLAGGEVDLVLIQEPWIISNRVSGLSTREYRLFAAQEEGKTRTCILAKKNLSVFLLYNYSDGNTTSVSLELQSKPIRLVSAYLVHDILDPLPGHKLRQLIKDSEDLGTGLLVGCDANAHHGQWGSSNTNVREAARLRKILSKSPTNLGYLKKPDDSWTNSSEESLELLLDTHFPGSSTVAPTCNPSYLPRLDLSHSKHLEVQSTSTQFDSKLLPANSKTSVEDHSGEIMHLDTYQRTLEYVQSCQSWMETNNVVCGQSIVNTNVPKPNTDNNSLWPSVSSSTHPNANMIINDMTTSLIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -