Cfus007345.1
Basic Information
- Insect
- Chymomyza fuscimana
- Gene Symbol
- -
- Assembly
- GCA_949987675.1
- Location
- OX465088.1:102322269-102328517[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00077 0.081 14.0 5.6 1 23 201 223 201 223 0.99 2 15 0.00077 0.081 14.0 5.6 1 23 389 411 389 411 0.99 3 15 0.049 5.1 8.3 0.3 2 23 460 481 459 481 0.95 4 15 3.5 3.7e+02 2.4 0.8 1 23 556 580 556 580 0.91 5 15 0.33 35 5.7 1.0 1 20 587 606 587 608 0.70 6 15 0.25 26 6.1 1.5 1 23 617 640 617 640 0.91 7 15 0.0018 0.18 12.8 6.1 1 23 647 669 647 669 0.98 8 15 0.0041 0.42 11.7 2.5 2 23 677 698 676 698 0.96 9 15 0.00051 0.053 14.5 0.3 3 23 726 746 725 746 0.98 10 15 0.027 2.8 9.1 4.7 1 23 785 808 785 808 0.93 11 15 0.018 1.9 9.6 0.8 1 23 845 868 845 868 0.97 12 15 0.00023 0.023 15.6 1.3 1 23 893 916 893 916 0.96 13 15 0.00054 0.057 14.4 2.6 1 23 927 949 927 949 0.96 14 15 2.8e-05 0.0029 18.5 4.3 1 23 955 977 955 977 0.99 15 15 0.0019 0.2 12.7 2.9 1 23 983 1005 983 1005 0.98
Sequence Information
- Coding Sequence
- atgAACAAAATATGCAGAACGTGCTGTAGCAGACACTCTAAGCTGTTTTACGCGCTGGACACTTTGCATGTATATAATTATGAGAACAAAACACTTGGCCAAATGCTGAAGGAGTTGATGAGTGCTGAGTCATCAGAACAGTACAAAAAGCTTTCTTCTTGGATTTGTGGCAACTGCTGtcggaaattaaaaaatgcttatgGCTTTGTCGTACAAGCCGTCAAGGCACAAAGGTATTTTTTGCAGGAAAATTTAGCTAGCACAGAGCAAGTCAAGCAAATAGATATGGAAGAGGATTGTCTAGATGAAACGACAGTTTCCTTGCAATCAGATGATAACGCCGATTGTAACACGACTTTATTTGAAGATTCTTCAATTGATATTAAAGTAGAGCAAGTACTAGAAGCTGATGATACTGTTGAGCCCAGTTCTCCTCAATATATTATCTTCGAACCTTTAGTTCCAAAACTGGAAATGGCCGCTGACAGTAATACAAGTTCTGAcgAACTAGATGATGTTCCACTAAAAATACTCAAACGCAAGGAAATCAAACCGAAGGCATTGAAACAGAGTTCTCTTGACAGCTGTTCAAAACCACCTTATAAATGCGAACAGTGTTCCAAGTCTTACAAATATTTAGAGTGTCTTAGAAAGCATGCTAAAAAACATGAGAACAATGACCAAATCGTAGACCAAATTACTAAACACAAAAAAGAACAAACTATGAAAAATTTACACGAAACCAAAAATTTAgagcaaaaaagcaaaaacaactcCAAGAAAAAGCAAGCCTTCAAGGCACAAAGGTATTTTTTGCAGGAGAACTTAGCTATCACAGAGCAAGTCAAGCAAATAGATATGGAAGATGAAACGCCAGTTCCCATGCATTTAGATGATAACACCGATTGTAACACGACTTTATTTGAAGATTCTTCAATTGATATTAAAGTAGAGCAAATACTAGAAGCTGATGATACTGTTGAGCCCAGTTCTCCTCAATATATTATCTTCGATCCTTTAGTTCAGAAACTGGAAATGGCCGCTGACAGTAATACAAGTACTGCgagCGAACTAGATGATGTTCTACTAAAGATACTCAAACGCAAGGAAATCAAAACGAAAGCATTGAAACAGAGTTCTCTTGACAGCTGTTCAAAACCACCTTATAAATGCGAACAGTGTTCCAAGTCTTACAAATATTTAGAATGTCTTAGAAAGCATGCCAAAAAACACGAGAACAaGCAAAAACGCAAAAACAACCCAAAAAGAGTTAATTTGACTCAAAGTAACCGCAAGAAAAAGCGCGAGAGACTTAAAGATGTAATTTACACTGACTTTAATTTACAGCTGTGCAAACCCAACGGCCGCAAGTCAATAAAATGTATGATTTGCCTGCTTGATTTTGCCAAACTGTCTGAACTTCGCAATCACTTCAATTTACATCCCACGGACATTACTTTTGAGGCACACGGCCATCCCATAGGTCGCATAGCAGAAGGTTTCTATAGAAATGCAGTAGAGTCTACAGAAGAAGGTCTCAAGAATCGTATTCTAAATGACCTAGATGATGGGAATTATTCCCGCTATTATTCCATTACAAATGAAGCTGGCTATGAAATGAGCTTGGACAGTTCTGACACGGATGGTGACGAGGAGCATACAAATTACACGTGTGACCTATGCCCTTCAAAAAGCTGGCCGAGGAAATACTTGCTTTATGAACACCATAAAGCAATACACAGCTGGATAGATGCTCCCCATCCTTGTCGACGTTGTGGAGCCCGTTTCCTTAATTCTAACTTGCTTTCGCATCATTTAAGTACACAGTGCTATAATGCTTTGAAGCGTTATCGCTGTGAAAAATGCCCATTACGGTTCTTTTGGCGCCAGAACCTTTATAATCATAACAAACTAGAGCATAAAAACAAgAGAGAAAACTTTCAATGTGATAAGTGCCCACGCTGTTTTCTAAATCAGCATTCCTACACCAGGCATATGTTACTCCACGAGGAAACCACAAAACTAATACCCTGTCGTTGGTGCACTCGCAGTTTCTATCGTCTGGGGCTGTACCATAAACATTTAAAGCGCCACGGCTTTGAAGCAGCTGACATACCTTTGGCTGAGACGTTGCTGATGGCTATGGCTAAGCCAGTTGACCCAAAGACTATTTTATGTAAATTGTGTGATCTTAAGTTTGATTCTCTGGATGCCCTGCGCAACCACATATCCATGCATCCAAAATCCCACAGCATTGACGCGAGCAATTATATAATAGCCACAAATGCCGGAATTGAGATAGACTTGAACGATACGGACTGCGAAAATAATGAAGGTGCTTTTCAAAAGTCATACAAATGCAATCTTTGTGGGGTAACGTGCAAGCATAGACATGACATGCTAGAACATCAGTATGCAATACATACCTTTGACAAAATGCCTTTCTCTTGTGAGCACTGTATATTTAAAAGTGTTGATAAGCGAATTATGGATTATCATCTACGCAGTCAATGTTTAAATAAGGAAAAACCGTTCAGCTGTCCACAATGCCGATACAAATTTCAATGGGAAGAGAATCTTCAGTTGCACATAAGTACGCGACATGCCGACGCTCCAGAGACTGTTGGTACCAAAGTAAATAAAGGCAAAACCACAGAATTGAGTGAGCGTTATAAGCACAAATGTCCTCATTGCGTACGagcttttgtattgcaaataAGCCTTGAGAAACACATACGCGACATGCATGTTGTTAAAAGATTCGCCAATAGTAAAGTATACCTATGCTCTCTGTGCGGATTAAAATGTACATCACAAAGCAAATTAGACATTCATATGAAACGTCATAACAAGATAAAACCATTTAAGTGCGATCATTGCGATATGCGTTTTACGGTCTTTTACGAATTGAAAGTCCACCAGCGGAAACATACGGGTGAGCGACCATACCACTGTACGCTGTGTGGTAAAAATTATTCAAGGATAAATAAATGGAAGAAACACGCGTTAACGCATAGGGTTAacaattaa
- Protein Sequence
- MNKICRTCCSRHSKLFYALDTLHVYNYENKTLGQMLKELMSAESSEQYKKLSSWICGNCCRKLKNAYGFVVQAVKAQRYFLQENLASTEQVKQIDMEEDCLDETTVSLQSDDNADCNTTLFEDSSIDIKVEQVLEADDTVEPSSPQYIIFEPLVPKLEMAADSNTSSDELDDVPLKILKRKEIKPKALKQSSLDSCSKPPYKCEQCSKSYKYLECLRKHAKKHENNDQIVDQITKHKKEQTMKNLHETKNLEQKSKNNSKKKQAFKAQRYFLQENLAITEQVKQIDMEDETPVPMHLDDNTDCNTTLFEDSSIDIKVEQILEADDTVEPSSPQYIIFDPLVQKLEMAADSNTSTASELDDVLLKILKRKEIKTKALKQSSLDSCSKPPYKCEQCSKSYKYLECLRKHAKKHENKQKRKNNPKRVNLTQSNRKKKRERLKDVIYTDFNLQLCKPNGRKSIKCMICLLDFAKLSELRNHFNLHPTDITFEAHGHPIGRIAEGFYRNAVESTEEGLKNRILNDLDDGNYSRYYSITNEAGYEMSLDSSDTDGDEEHTNYTCDLCPSKSWPRKYLLYEHHKAIHSWIDAPHPCRRCGARFLNSNLLSHHLSTQCYNALKRYRCEKCPLRFFWRQNLYNHNKLEHKNKRENFQCDKCPRCFLNQHSYTRHMLLHEETTKLIPCRWCTRSFYRLGLYHKHLKRHGFEAADIPLAETLLMAMAKPVDPKTILCKLCDLKFDSLDALRNHISMHPKSHSIDASNYIIATNAGIEIDLNDTDCENNEGAFQKSYKCNLCGVTCKHRHDMLEHQYAIHTFDKMPFSCEHCIFKSVDKRIMDYHLRSQCLNKEKPFSCPQCRYKFQWEENLQLHISTRHADAPETVGTKVNKGKTTELSERYKHKCPHCVRAFVLQISLEKHIRDMHVVKRFANSKVYLCSLCGLKCTSQSKLDIHMKRHNKIKPFKCDHCDMRFTVFYELKVHQRKHTGERPYHCTLCGKNYSRINKWKKHALTHRVNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -