Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: -
Assembly: GCA_949987675.1
Location: OX465090.1:31143830-31145425[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00068 0.071 14.1 3.0 2 23 219 241 218 241 0.95

2 8 5.7e-05 0.006 17.5 1.0 1 20 260 279 260 282 0.93

3 8 2.2e-06 0.00023 21.9 0.3 3 23 287 307 285 307 0.97

4 8 0.0019 0.19 12.8 4.2 1 20 313 332 313 335 0.95

5 8 2.2e-05 0.0023 18.8 1.6 2 23 342 363 341 363 0.96

6 8 0.00014 0.014 16.3 0.5 2 23 370 391 370 391 0.95

7 8 7e-05 0.0073 17.2 0.5 1 23 397 419 397 419 0.96

8 8 8e-07 8.4e-05 23.3 0.4 3 23 427 447 425 447 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00068	0.071	14.1	3.0	2	23	219	241	218	241	0.95
2	8	5.7e-05	0.006	17.5	1.0	1	20	260	279	260	282	0.93
3	8	2.2e-06	0.00023	21.9	0.3	3	23	287	307	285	307	0.97
4	8	0.0019	0.19	12.8	4.2	1	20	313	332	313	335	0.95
5	8	2.2e-05	0.0023	18.8	1.6	2	23	342	363	341	363	0.96
6	8	0.00014	0.014	16.3	0.5	2	23	370	391	370	391	0.95
7	8	7e-05	0.0073	17.2	0.5	1	23	397	419	397	419	0.96
8	8	8e-07	8.4e-05	23.3	0.4	3	23	427	447	425	447	0.98

Sequence Information

Coding Sequence: ATGATAAAACTGCAGCCACCCTCAGAGCATGCTGGCTCTTATCATAACTTTCGTTGCGGTGAAGTGTTCTGCATTGGACCCACTGCCTAtcatgtatgctgtgcactgtgCGGTCTTAAGATAGCCTACGCTAAGTTTCCCGAACACTTTCGCCTAGAGCATCTCAATCAATCAGAGCTTTCTGACTGTAAATTTTTCGATGCAACAACAGAAGTGCAGAATGAAGTTGAACAGCACAACGAAGTGTCAATAAAGACCGAGTACGATCCGATCGCACAAGAGGCGGGTGAAGAAATTTCTACGGGTGCGGTAGACTTGGATCAAATTGCACTGCTTGATCGTGATGACGAAATTGAAACATTTGAGGAACTGTTACCAACTGCGTCCAGTCCGAATTCTCACACAAAGCCGCGACGTCAAAAAAAGCGAGCTGCTGCTATGAGAAACAGACTAGTATTAAAGAATATCAAGCAGTTGGACATTATTGAACAGGACCATGATAGTCTAGAAGTACCACTAAGTGAGACCAACGATAAAGACTGGCTGGACAGCGAGAGCAACATGCAGGTAGCTGAGCTCGATGATGAACGACAGCTGAGCGAAAGCAGCGATGATGAGGTGGATACTAAAGACGATGCCAAAGAAATGCTACTCCAGTGTGACGAATGCGATAGACACTACAGAACCAAACGTGGGCTACAAGGTCACAAACGCAACAAACATAGTACCACAGAGGTCGTCTTAGCCGAGAAGAAAAAACGCAATGTCAAGGTTGTCTACAAATGCACAGATTGCGATGAGACATTTCGTACCGAGCGCGATCTACGTGGCCATCGCTGGAAGCACACGGGCATGGACTGTGACATTTGCGGCAAACCTTTTACTCAGTCTGGCAATATGCTGCGGCATCGGCTGCGACATAGTGGCATTAAGCCCTACAAATGCCAGGACTGTGACTCTACGTTTTATACCCAAAAAGAGCTTAATTCTCATAAAATTTGCCACACCAAGCGTATGCCTTGCATTTGTGAAATCTGTGGGCGTCCTTGCCGCGATCGTGGCGTGCTTACTGCACACATGCGTCGCCATACGGGCGAGCGACCGGCCAAATGCGATGTTTGTGGTAAAGCTTTTTATAGTTTTCATGATTTAAATGTGCACGCCGTTTCACATACGAATTTGCGGCCCTTTGTCTGTGACATATGCGGCTCCACTTTCCAGCGCAAGAAAGCGTTGCGCGTACACAAATTGCTGCACTCCGAGGTGCGTAAATATGGCTGCAAATTGTGTAGCAAGACATTTGCACAGTCTGGTGGACTCAATGCACATATGCGCACACACGAGTCTGCTAGAGCCAAAGCCAAAGCGGCAGAAGaggctgcagctgcagcaagAACAGCCATTATTCTGCCCATATCGGGCGCTTTGCTCTCGACAGCTTCACTGGATAACTCAGTTAATATTTTAAGCGTCGATAATGAGGAGCTGCTGGATACACACAGTCTTGAACAGGGTCATGTTGTACACAGAACAGCCGGGTCAGAAGAGGATGAAGTTACTATAACTATGGGGCCAGCAAGTTGGCACGTTACGTAA
Protein Sequence: MIKLQPPSEHAGSYHNFRCGEVFCIGPTAYHVCCALCGLKIAYAKFPEHFRLEHLNQSELSDCKFFDATTEVQNEVEQHNEVSIKTEYDPIAQEAGEEISTGAVDLDQIALLDRDDEIETFEELLPTASSPNSHTKPRRQKKRAAAMRNRLVLKNIKQLDIIEQDHDSLEVPLSETNDKDWLDSESNMQVAELDDERQLSESSDDEVDTKDDAKEMLLQCDECDRHYRTKRGLQGHKRNKHSTTEVVLAEKKKRNVKVVYKCTDCDETFRTERDLRGHRWKHTGMDCDICGKPFTQSGNMLRHRLRHSGIKPYKCQDCDSTFYTQKELNSHKICHTKRMPCICEICGRPCRDRGVLTAHMRRHTGERPAKCDVCGKAFYSFHDLNVHAVSHTNLRPFVCDICGSTFQRKKALRVHKLLHSEVRKYGCKLCSKTFAQSGGLNAHMRTHESARAKAKAAEEAAAAARTAIILPISGALLSTASLDNSVNILSVDNEELLDTHSLEQGHVVHRTAGSEEDEVTITMGPASWHVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337794;
90% Identity: iTF_00336190;
80% Identity: -