Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: -
Assembly: GCA_949987675.1
Location: OX465089.1:19085121-19087421[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00021 0.022 15.8 0.9 1 23 206 228 206 228 0.98

2 11 6.5e-06 0.00067 20.5 0.5 1 23 234 256 234 256 0.99

3 11 0.00017 0.018 16.0 2.5 1 23 262 285 262 285 0.97

4 11 0.31 32 5.8 3.8 1 20 291 310 291 313 0.95

5 11 0.0051 0.54 11.4 2.4 1 23 319 341 319 341 0.98

6 11 7.9e-05 0.0083 17.1 1.8 1 23 347 369 347 369 0.98

7 11 0.0002 0.021 15.8 2.9 1 23 377 400 377 400 0.96

8 11 0.00089 0.093 13.8 0.3 2 23 407 428 406 428 0.97

9 11 0.0011 0.11 13.5 1.2 1 23 434 456 434 456 0.98

10 11 0.0036 0.38 11.8 1.1 1 23 462 485 462 485 0.97

11 11 5.8e-05 0.006 17.5 5.7 1 20 499 518 499 521 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00021	0.022	15.8	0.9	1	23	206	228	206	228	0.98
2	11	6.5e-06	0.00067	20.5	0.5	1	23	234	256	234	256	0.99
3	11	0.00017	0.018	16.0	2.5	1	23	262	285	262	285	0.97
4	11	0.31	32	5.8	3.8	1	20	291	310	291	313	0.95
5	11	0.0051	0.54	11.4	2.4	1	23	319	341	319	341	0.98
6	11	7.9e-05	0.0083	17.1	1.8	1	23	347	369	347	369	0.98
7	11	0.0002	0.021	15.8	2.9	1	23	377	400	377	400	0.96
8	11	0.00089	0.093	13.8	0.3	2	23	407	428	406	428	0.97
9	11	0.0011	0.11	13.5	1.2	1	23	434	456	434	456	0.98
10	11	0.0036	0.38	11.8	1.1	1	23	462	485	462	485	0.97
11	11	5.8e-05	0.006	17.5	5.7	1	20	499	518	499	521	0.94

Sequence Information

Coding Sequence: ATGCCCAAAAACAGCGAAGATGTTGAAGATCTGCAATCCTTTCTCAATAACTTTCACAAGGAAATTGAAGATGGTACTGTGGTGACTATAACGCCAGAAAATGTAGGCGAGGATAAGGTAGTGCGTAAAATTCTGTTGGCAAACAGAGCCACTCGAAGTGATGAGAAGGATGCGGTGAAGACTGTAAGCAGCGCCGAGTGTGATGACGATGATGAGATCTACTACTTGGATGATGAGGGAAATTGTTACATTAAAACAACTCCAAAAAAGCAGCAGGAGCTAAAGAAGGCAGCCAAACAAGCATCTGCCGTGACACTATCGCGTAGCTCTTCTCGAATTACACGCTCTGGTACCAGCAGTGCCACTGTCACACTCCATGCAGCCAAGCCCAGCTCACCAACAAAACGCACGTCTAGCAAAACACATGCCGTTTGTTTTAGAGAGGAACAGGATGATGAAAACGAAGAGCTAGCTGATGATCCCAGTCCCTCAAAGGATGATAACGAAAAGGTCTACGAGTTCGAAGAAAATGTTGTAGAGGAACCTAGTTTTGCGATAACTGGAAAACAATTTAAACTAAAGCCAGTGGCCACAGAGCCAGCCACAAGTCACAAGTACGCCTGCGCTAAATGTGGCTATGCAACAAACAAGAAGTTTCTCATAACTCGCCACATGCGTACGCATGAAGATGAGCGCCCTTTTAAGTGCTCACTCTGCGATCGTGGCTTCAAATCAAATGTAGGTCTTGTAAACCATTTAAATACACATTTGGGTAAACGTCCACATAAATGCAAGCTATGTGAGAGCGCTTTTACCACCAGCGGTGAGTTAATACGTCACACACGGTATAAACATACCAAGGAAAAACCACATAAATGCACGGAATGCAGCTATGCCAGCGTAGAGCTAACCAAATTACGTCGCCATATGACTTGCCACACAGGTGAGCGTCCATATCAGTGCCCCCACTGTACTTATGCATCGCAAGACATGTTTAAACTAAAGCGACACTTGGTTACGCACACTGGAGAAAAGAAATACCAGTGCGACATTTGCAAATCACGCTTTACACAGTCCAACTCACTAAAGTCTCATAAACTTATACACAGTGTTGTGGACAAGCCTGTTTTCCAGTGCACACTATGCCCCACTACATGTGGGCGCAAGGCAGATCTGCGTCACCACATGATCAATATGCATAGCTCGGAAAATAGTATACCATGCAAACGCTGCGGTCAGGAGTTGCCCGATCGCTATCAGTACAAGCTACACATTAAGACGCACGATGGCGAAAAGTGTTATCGCTGCAATCTCTGCTCTTATGCATCGGTCTCGCAACGGCACTTAGACTCACATATGCTTATACACACTGATGAGAAGCCATTTAAATGTGCCTATTGCATTTTGGAATTCCGACAACGGCAGCTACTTAAGCGTCATGTAAACATATTTCACAATTCCAACTATAAACCACCAGAGCCGCGGGATAAACTACACTCGTGCCCCACTTGTTCGCGTAGCTTTACGCATAAGGGTAATTTAATGCGACATATGGAATGCCATGATCCTGATTTAAATGCTAATGATgataaattaaaacttaaactgGGACGCAATATACGTGTGCCACCAGACGACACTTTGGAAAAAGAATCTGATTTTAAGTCACCGGACCAAGCCGAAAGCGTAGTTTCCGATGCAGACGATATAGACCTTGCAGAATATGAAGTACTAAAGGAATACGTTAGCGATAGCAAAGAAATGCGTCTAGTTGAGTTAGACAAAGATTCAGAGAAGTCGCACGTCAAGGAGCAAAACTCGACAAAAAGTAGACAACGCAGCACCAAAACTTTTCGTATTAAGGAAGAATTAGAGGCTTCAGAGTTTACCATTGAGATAAAAGATGAGGAGGATTATGTGGTGCTGGAAGTGGTTTCCAGCGATGAAGATATGGTTGAAGTAAAACGAGAGCCAATTAACAAGAACAATTATTTTGGTTTTGAGGAATATGCTGGTTCAGATTCTTATGGGGGCCCTGGTAATGCTGAATCTGAAGTTGACGGGGCCTCACAGGAGTTTTTGCAACTAATGGATATTATCGAGCAGGATAATTAG
Protein Sequence: MPKNSEDVEDLQSFLNNFHKEIEDGTVVTITPENVGEDKVVRKILLANRATRSDEKDAVKTVSSAECDDDDEIYYLDDEGNCYIKTTPKKQQELKKAAKQASAVTLSRSSSRITRSGTSSATVTLHAAKPSSPTKRTSSKTHAVCFREEQDDENEELADDPSPSKDDNEKVYEFEENVVEEPSFAITGKQFKLKPVATEPATSHKYACAKCGYATNKKFLITRHMRTHEDERPFKCSLCDRGFKSNVGLVNHLNTHLGKRPHKCKLCESAFTTSGELIRHTRYKHTKEKPHKCTECSYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHLVTHTGEKKYQCDICKSRFTQSNSLKSHKLIHSVVDKPVFQCTLCPTTCGRKADLRHHMINMHSSENSIPCKRCGQELPDRYQYKLHIKTHDGEKCYRCNLCSYASVSQRHLDSHMLIHTDEKPFKCAYCILEFRQRQLLKRHVNIFHNSNYKPPEPRDKLHSCPTCSRSFTHKGNLMRHMECHDPDLNANDDKLKLKLGRNIRVPPDDTLEKESDFKSPDQAESVVSDADDIDLAEYEVLKEYVSDSKEMRLVELDKDSEKSHVKEQNSTKSRQRSTKTFRIKEELEASEFTIEIKDEEDYVVLEVVSSDEDMVEVKREPINKNNYFGFEEYAGSDSYGGPGNAESEVDGASQEFLQLMDIIEQDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337761; iTF_00336150; iTF_00339352;
90% Identity: iTF_00337761;
80% Identity: -