Cfus007709.2
Basic Information
- Insect
- Chymomyza fuscimana
- Gene Symbol
- Sall1
- Assembly
- GCA_949987675.1
- Location
- OX465088.1:108424042-108427634[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.1 11 7.3 0.6 2 15 272 285 271 285 0.90 2 14 0.44 45 5.3 1.7 3 23 300 321 299 321 0.95 3 14 4.6e-05 0.0048 17.8 1.2 1 23 327 349 327 349 0.94 4 14 4.3e-05 0.0045 17.9 2.5 3 23 357 377 355 377 0.95 5 14 0.0022 0.23 12.5 1.1 2 23 383 404 383 404 0.98 6 14 0.00099 0.1 13.6 2.6 1 23 409 431 409 431 0.97 7 14 0.013 1.3 10.1 3.7 1 23 437 460 437 460 0.94 8 14 0.79 82 4.5 0.3 2 10 680 688 679 699 0.77 9 14 0.46 48 5.2 2.1 2 23 712 734 712 734 0.92 10 14 2.7e-06 0.00028 21.7 0.3 1 23 740 762 740 762 0.98 11 14 1.7e-05 0.0018 19.2 1.9 3 23 770 790 768 790 0.95 12 14 0.0008 0.083 13.9 0.6 1 23 795 817 795 817 0.97 13 14 1.6e-05 0.0017 19.2 0.9 1 23 822 844 822 844 0.98 14 14 0.32 33 5.7 7.2 1 23 850 873 850 873 0.81
Sequence Information
- Coding Sequence
- ATGGGTGCACCTTTTTGGGCTCATTGGTGTCGGCTATGCGCAAAGGACTCAGACGAATTAAAGCTGGACTTAAAAAATCTTGATCACGATATCGTTGATGGtatgcaaaagtattttgaagtCAAAGTACGTTTTAACGACAATTTGACAACCAAACTGTGCTCCTGTTGCTACAATTTGTTAAACGAACTAATTCAGTTCTCCAGACGAGTTAGCAAAGCTCAAACCATATTTGAAGTTCTGCGTTTCTTTGATACAAATAAAGCTGTCGATATAAAGGCCCTGAGAGAGCACTGGGGTCTAGAGGAATTTGATTTAACATTGGAATCACACGTAGAACGAAAGACAAATGTGGTTGTGCCTGAATTCATAGATGTGCAAAATGTTTCAGGCAACGAGGACATACAAGacgaaaaaaatgtcaaaaataaagAAGCAGTAGAAATAGCTGTGGGtaacaaaagaaattttgatgaacAAGATATCTTAGGATTGGCAACTGATTCAGATATAGTGAACAGCTTGGTTTCAATAAACAAGGACATTGAGAGTCCAGCGGCATCTTCCCCAGAACGCGGTGCCAGGAGCGAGTGCAGCTCTACAGAAGAGTCGGAcaatgacgacgacgatgactgGACAATGCCAACTGCTTCAAAAAAACCTCTGAAAGCACATTTGCCTCTACAAGTGTCTGACAACCATCAACCGCATGCCACAAAGTCGAATAATAATTCGAAAGATGTTAAGGAAGCTCCAAGAAATACGAGTGATGATTTTGAGAAATGCTTGGACCACCTCAAGGACGATGAAACTGAATGCAATTTATGCGGCAAATCGTATTACACCTCATATCATCATGAGTGTAAAGCGAagaataaaaattccaaagcaGCTATCTGTCAGTACTGCAATAAGACTTTATCCTGTGTAAAAGGACTACGGCTACACATTCAGCGGATACACGAAAACAAAAGACCATTTGTTTGCAGCCTGTGCGATAAAGGATTTAAGACATTAAAAGAGCTTAAAAACCATAGGTTCGCACATACTGAAGAGCGCCCACATTTGTGTCCAATATGCAACAAGGGGTTTAAGAAAAAAGCCCAACTAAAGAATCACTCACAATCACATGGGGAACCCAAAGGACAATGTGACATTTGTGGAAAAAAAGTGCAAACTAAACTTAAATTGCGTGTTCATAAACTTACGCATGAAGCTCCCCAACACAAATGTGATTATTGCGGCAAACTTGCCGTAAGACCGCATACTCTCAAATATCATATGCTACTGCATCTTGGCATAAAGCCGTTTCTTTGTAAATACTGTCAAAAAGCATTTACTAGCAGACGTCTCTGTATTCAGCATATCCAAAAAGAGCATCCAAAAGAATATGAGCAGGATGAGGACAAGGAGTTATCAAGTAGTATACCCATACCTCATTTTCACGAGataTGCGCGGATGACCCTTTAGGTACTAAACTCTGCTCCTGCTGCAACAAATTGTTACATGAGCTTGTTGCATTCTCGACACGAGTCAACAACGCTAAAGCCATGTTCGAGGCGGCGCGATTGTTTGATAAAGACGCAACAATCGATGTTAGAGACTTTAGAAAACAGTGGGGATTAGAGGAAAGTATTTCGTCAATGGAGTCTGATGGAATCTCAGCCGATACTCATATAATGCTCAACCAACACAACGCCAAGGCTATACAGCCAGAGTTCATAGATGTAGCAGAAAATACGGAAATGCAAGGGAACTCCTTCCATGATAGCtcttttaatcaaaaatgtagCCAGAGGGACTTCAAAATGAATGGCCTAGTTGAAGAGCCTAGAAACCGTGAAATTTCAGATGAGCAAGAGAAAATATGTAGATACAATGTGAACACTGACCACGGTGAATTTTTGGTAACTGTCAAAGACGAACCTGGCTCACCTCAATCAGAGTTTGCATCAGAAGAGACATCAAGCCTAAACGAAAGTGAAGAATTTGAACCCTAtgaaagaaatattaaaaccgAAAAACATAACTCTTTAATGTGCCATTTGTGCGGCAAATCATACCTAAAGGGAAAGTATTACAATGTGCATTTAACGCAGTGTACCGGAAATACTAGAATTTATAGACCTGCAACATGTgaaatttgcaacaaaacaatGTCATgtccaaaaaatcttaaaatacaTAAACTGCAGGTGCACCAAGATATGAAGCCATATGTTTGTGAAACTTGTGGTAAGGCTTTCAAAGTAAAAAAAGCTCTTAAAGATCATCAAATATCTCATACTGAGGAGCGGCCACATCTGTGCCCAATATGTAATAAGGGATTTAAAAATTCGGTACAGCTTAATaAGCACAGTCAGTCGCATGGGGAACCACAATTCGAATGTGACACTTGTGGAAAAAAACTACAAACTCGAGCTAAATTGCGTGTTCATAAGTTAATTCACAACGAGCCCAAATACGAATGTGAATATTGCGGCAAACGCTCCGTAAACTCAGATACATTCAAAAATCATTTGCTAAGTCATGTTGGTATTAAACCGTAtgtttgcaaatattgcaaaaaaccTTTTACTAGCAAATCAATTTGCTGCAAACATACACTTAAAGAGCATCCCCAAGAATATGAACTGGATGACGACAAGGAATTTTTGCGCAATGAAAAAGTTCCACATTTAAATGAGCTGCGTACCatGGTGCGTGCAATGGCAGAGGGATTAAATTAA
- Protein Sequence
- MGAPFWAHWCRLCAKDSDELKLDLKNLDHDIVDGMQKYFEVKVRFNDNLTTKLCSCCYNLLNELIQFSRRVSKAQTIFEVLRFFDTNKAVDIKALREHWGLEEFDLTLESHVERKTNVVVPEFIDVQNVSGNEDIQDEKNVKNKEAVEIAVGNKRNFDEQDILGLATDSDIVNSLVSINKDIESPAASSPERGARSECSSTEESDNDDDDDWTMPTASKKPLKAHLPLQVSDNHQPHATKSNNNSKDVKEAPRNTSDDFEKCLDHLKDDETECNLCGKSYYTSYHHECKAKNKNSKAAICQYCNKTLSCVKGLRLHIQRIHENKRPFVCSLCDKGFKTLKELKNHRFAHTEERPHLCPICNKGFKKKAQLKNHSQSHGEPKGQCDICGKKVQTKLKLRVHKLTHEAPQHKCDYCGKLAVRPHTLKYHMLLHLGIKPFLCKYCQKAFTSRRLCIQHIQKEHPKEYEQDEDKELSSSIPIPHFHEICADDPLGTKLCSCCNKLLHELVAFSTRVNNAKAMFEAARLFDKDATIDVRDFRKQWGLEESISSMESDGISADTHIMLNQHNAKAIQPEFIDVAENTEMQGNSFHDSSFNQKCSQRDFKMNGLVEEPRNREISDEQEKICRYNVNTDHGEFLVTVKDEPGSPQSEFASEETSSLNESEEFEPYERNIKTEKHNSLMCHLCGKSYLKGKYYNVHLTQCTGNTRIYRPATCEICNKTMSCPKNLKIHKLQVHQDMKPYVCETCGKAFKVKKALKDHQISHTEERPHLCPICNKGFKNSVQLNKHSQSHGEPQFECDTCGKKLQTRAKLRVHKLIHNEPKYECEYCGKRSVNSDTFKNHLLSHVGIKPYVCKYCKKPFTSKSICCKHTLKEHPQEYELDDDKEFLRNEKVPHLNELRTMVRAMAEGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -