Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: prg
Assembly: GCA_949987675.1
Location: OX465088.1:61569716-61571581[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.8 1.9e+02 3.4 1.7 1 23 218 241 218 241 0.85

2 9 0.0017 0.17 12.9 0.1 1 23 247 270 247 270 0.96

3 9 8.4e-06 0.00087 20.1 2.3 1 23 276 298 276 298 0.98

4 9 1.3e-07 1.4e-05 25.8 4.8 1 23 304 326 304 326 0.99

5 9 1.6e-05 0.0017 19.2 0.7 1 23 332 354 332 354 0.98

6 9 6.8e-06 0.00071 20.4 1.5 1 23 360 382 360 382 0.98

7 9 6.6e-06 0.00069 20.5 0.6 1 23 447 469 447 469 0.96

8 9 1.4e-05 0.0014 19.5 0.1 1 23 474 497 474 497 0.91

9 9 0.019 2 9.6 2.3 1 23 501 523 501 523 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.8	1.9e+02	3.4	1.7	1	23	218	241	218	241	0.85
2	9	0.0017	0.17	12.9	0.1	1	23	247	270	247	270	0.96
3	9	8.4e-06	0.00087	20.1	2.3	1	23	276	298	276	298	0.98
4	9	1.3e-07	1.4e-05	25.8	4.8	1	23	304	326	304	326	0.99
5	9	1.6e-05	0.0017	19.2	0.7	1	23	332	354	332	354	0.98
6	9	6.8e-06	0.00071	20.4	1.5	1	23	360	382	360	382	0.98
7	9	6.6e-06	0.00069	20.5	0.6	1	23	447	469	447	469	0.96
8	9	1.4e-05	0.0014	19.5	0.1	1	23	474	497	474	497	0.91
9	9	0.019	2	9.6	2.3	1	23	501	523	501	523	0.98

Sequence Information

Coding Sequence: ATGCTTAATTTGGATACAGAAGCCGTACTAGACATGTCCGGGGAAACTCACAAAAACAATGCAAACATGCTGGCTACTTCCATCTGCCGCCTTTGTCACCGCTCAGAATTGTCAGAAACGTCACCCAACATATACGAAACAGTCTCAGAGTTCGATAAAACGGAGAACGGAGCAGAAACATTAATTGCCGACCTGTGCTTAAATTTGTTAGGTGTTcagTATGAGCGTCACGAATTTCTACCGGAACGTATTTGTCTACCCTGTCTTGATATGCTTGAGGATTTTTATGAGCAACGCCGAAGCATGCAGGAGCGTGAACACTTACTTCAGCAGGATTTGCACATGGTTATAAAACTGGATCCCAAATTTCGGCCTGGTTTGAATGGAAACCCCGGTATTTTTCAACCAGAGGATGACTGTGAAATTATAGATGTGGACCCGGATCAATTATTTGAATCCAGTGAGGATGAAGATTTTCTCATTGGCTCTGATGTTGACGATGAGGATGATGACGACGAGGACGTTCAACATGAAGAGGATGTCGATATGCCTCTGGGCATGGATGCGGCTCAAATGCACACCTTAATGAGGGGACACCAAACTGTAGAGACTGGCACTATTGTTTCCGCTGACATGCACCCAAAAAGCGCATTTCTTTGCCAATTTTGCGACTTGGCCTTTACACTTCAAGAGGACTGTCGGCAGCACGAATTGAATTCTCATGACTCGACCACACCATACAGTTGCAATTACTGTCAGCTAGGCCTAAGCACTCGCCCAGCACTGATTTCGCACATAAAGGAGCTCCACGACGCAGATCGTCCTTATGTCTGTGCTCAGTGCAGTAAAGGTTTCTGTCGACGCTCAGACCTCAAAAAGCATACCATTGTACACACCGGTGTTCGACCTTATACCTGCCATGTGTGCTATAAATCGTTTTCGCGCAACACCAATTTAACCAAGCACTTGCGTATACACAGCAGTGTAAAACCTTTCGTTTGTCAACAGTGTCCACGTTCTTTTCAAACTCCGTTGGAACTCATGAAGCATACACGTTCACATGCCGAGGTGAAACCTTTTCAATGCACTCGATGTCCCTCTTCATTTTCTCGTAGGGATAAGCTACAAATGCACATGCAGGTTCATGATAGACGTGACGTTCAGCAAAAATCGCGTATTGGCAATGTTCAAATTTCGGCTGAGCAACTGCCAATGCCACTGCATCCTTACGTAGAAAGTAGCGCTGAATCGGCGTATTTGAACTAttcacaacaacagcaaaccgTGGCAGTAAAACAGCAGCACATCCCAAGACCCTCTGGTAAACCTTCTCGTAATTTCCGTTGCGACGTGTGCGACAAAGCATTCCAGCGGGAACGCGATTTGCAACGTCATCGCGCGTTGCATCTAGATTCACTGTTTGCGTGTAAAATCTGCGGTCAAGGCTTTAATAGACCCGAGAAGTTGCAACGTCATGAGCTGGAGGCGCACGGCCCGAACTACACATGTGCCATTTGTTGCATTACGTTCTTGCATCAGTCAGATCTCGAGACGCACATAAAAGTGCATGAGCTACAACATAGTGTTGCAAAGAGTGCTCAAGAAGCGTTGAATGCTTCTGTACTGGCCCCGCAAGTGGTGACAGAGCAGGCAACACATATACAATCAGCGGTACAGGATGTAGTACAGCAGCCCATTCGGCCGTCAGCGGCAGAAATATCCTTTTACAGCAACATGATTCCAACAATGAATTTGGGCTTCTACAGTGAGACACGCCCTGAGGACCGTAATGGTACTTAA
Protein Sequence: MLNLDTEAVLDMSGETHKNNANMLATSICRLCHRSELSETSPNIYETVSEFDKTENGAETLIADLCLNLLGVQYERHEFLPERICLPCLDMLEDFYEQRRSMQEREHLLQQDLHMVIKLDPKFRPGLNGNPGIFQPEDDCEIIDVDPDQLFESSEDEDFLIGSDVDDEDDDDEDVQHEEDVDMPLGMDAAQMHTLMRGHQTVETGTIVSADMHPKSAFLCQFCDLAFTLQEDCRQHELNSHDSTTPYSCNYCQLGLSTRPALISHIKELHDADRPYVCAQCSKGFCRRSDLKKHTIVHTGVRPYTCHVCYKSFSRNTNLTKHLRIHSSVKPFVCQQCPRSFQTPLELMKHTRSHAEVKPFQCTRCPSSFSRRDKLQMHMQVHDRRDVQQKSRIGNVQISAEQLPMPLHPYVESSAESAYLNYSQQQQTVAVKQQHIPRPSGKPSRNFRCDVCDKAFQRERDLQRHRALHLDSLFACKICGQGFNRPEKLQRHELEAHGPNYTCAICCITFLHQSDLETHIKVHELQHSVAKSAQEALNASVLAPQVVTEQATHIQSAVQDVVQQPIRPSAAEISFYSNMIPTMNLGFYSETRPEDRNGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337768; iTF_00336156;
90% Identity: iTF_00337768;
80% Identity: -