Cfus002270.1
Basic Information
- Insect
- Chymomyza fuscimana
- Gene Symbol
- -
- Assembly
- GCA_949987675.1
- Location
- OX465088.1:36355242-36358408[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.069 7.2 7.8 0.3 2 23 27 48 26 48 0.96 2 15 0.1 11 7.2 6.2 1 23 54 76 54 76 0.95 3 15 0.042 4.4 8.5 1.0 1 20 110 129 110 131 0.93 4 15 1.1e-05 0.0011 19.8 2.0 1 23 139 162 139 162 0.98 5 15 0.00054 0.056 14.4 1.2 1 23 168 190 168 190 0.99 6 15 0.00023 0.024 15.6 1.5 1 23 196 218 196 218 0.96 7 15 0.12 13 7.1 1.9 2 23 544 566 543 566 0.96 8 15 0.0098 1 10.5 0.5 1 23 591 613 591 613 0.96 9 15 0.061 6.4 8.0 3.4 1 23 621 645 621 645 0.95 10 15 0.034 3.6 8.8 2.1 2 23 650 672 649 672 0.95 11 15 0.00035 0.037 15.0 0.2 2 21 685 704 684 705 0.93 12 15 0.00015 0.016 16.2 0.2 1 23 713 735 713 735 0.98 13 15 1.1e-06 0.00011 22.9 2.8 1 23 741 764 741 764 0.98 14 15 4.4e-05 0.0046 17.9 1.4 1 23 770 792 770 792 0.98 15 15 0.00041 0.042 14.8 2.9 1 23 798 820 798 820 0.95
Sequence Information
- Coding Sequence
- ATGGATAACGCATCCAGCAGCAAAAAGACAAACAATGTACACACGGTCACAATATCTTTGGATGCTATACCCAAGCTGCATTGTCCCATCTGCAGCAAGGCATGGAGTTCCCTGGCCGGCTATGCAAAGCACGTAAAGAAACATGAGCCGCCGGGCGGCTTTTTGTGTAATCACTGCATTGCTCGCTTCTGTCATGATGATGATCTGAAGGAGCACATGAAAACACACAAAACCGTAAAATGCAGCTCCTGCACAGACAGCGCCGATTATAGCATAGCCGAATATCGCACACACCTAACAGAATACCATAATGGTCAAAATAAGCTTTTTGTTTGCACTAAGTGCGGTGTGGAGTGTAGATCTTCGGAGCCTTACAAGCGCCACAGTGAGACAAATTGTGTCACGAAACAGACATTTAAATGCCAACACTGCGATATGAGTTTTGCTGCTAAATACAATCTTAATCTTCATATTAAAAGTTTGCATACCAAGAAGTCTAGGTTTCGCTGCACCTTTTGTGGCTTCTATGCCAGTCAGAAAAGTGAACTTGTGCAGCATGAGCGCACGCACAAAGCCAAAAAACCATTCAAGTGTGAGGTTTGCGGCCAATGTTTTCCAAATCGGGAGAGCTACGTCACACATTCCTCCGTTCATACAGGCGTAAGGCTAGTGGAATGCAAATGCTGTCATGTACGCTTCTCCTGCCACTCCAACCTGCTCAAGCACAGAAAATCACGACCTGGAACCTGTGGTCGTTATGTATATGATACGCCCAACGACAACGATCTGCCACCGCCACAGGTTAACAAGTTGTCCAAGTCAAATAGCAGAATGAGCAGGAGAAGTGCCAGAAGAGCAGTATACGAAAGTTCCTCCTCCGAAGATGAAAGAGAATTTATGACCGCATCTTGTGCCTCTGAAAGCGATGATGATGTGCCCTTAGCTAGTCGACTTAGAGCTAAGCCAAAAGTTGAAGCACAGCACAATGGTTATAGTGAATCAGATGATGATTTTCCAGATTTTGAGCCTGACAACAGTGAAAATGAGGACGAAGTAGCCGATATAAAGCTGCCGGCGCCTGCCAAAATCAAGGAGGAGGCCTATGATACCGACTTTGAATACCAGGATGCCAGTCTCTTTGTGCGTACCACTTGTGAGGTCAAGCAGGAAGGGAGTATAAGCGAAATATTTACCAATGAAAAGGACAAGCTGCTAGATGTTTTACTTAATACAAACGCTGCTTCAAATAATCTTAGGCCGTTTGAAAGTCTTAAAGTGGAGCGCTCATCTGGTATATTGGATGAAATAGCTGATGTGCCCATGCTGGAAACACCGGAGACAGAGTTTGTAGAAGAAGATGTGCTGGCACTCAAAGAGCTTTCAGACGAAGACGACACTCTTTTTGAGATTTCTAAGAAGCTCAAGGCTAAGGCCAAAAAGCAGCCTAAGACTAAGTTGCAGCCCAACCCTGAAAATGAGGTAACTATTAAGCGTAAATATCGCAAGCGCGGTACAGCCCGCACGCCTTCTCCACAGTCCTCTAAGGATGTGCCTAAGCGTGTAgccaaattaaccaaaaaagaACTAACGGAGCGACTGCGTATGATCAACAAAGTAGAGAGATCCTGGAAATGTCCGCACTGCGTTAAAATCTATCACATACGTAAGCCCTATGAAAAGCATTTGCGCGTTGATCACAAACTCAGCGAGACAGATATCAAGGACATATTTAAAGATTCCGATGCACATGAAAAGTTGGCTGAGGAGGTCTTTAAGTGCAAGATATGTGGCAAGATTTATTTGCTGGAGAAACGCCTGGAAACCCATATGAGTGTTCATGGCGAAAATGGCACCCTCACTTTTAAATGTCCCTGCTATTGCAATATATTCTTCGCCACCAAGGAAGAGGCAACAGAACATGCGCACAAACAGCACAAGGATCTACTCTACTGCGAATTGTGCGACAAGTATATGACTGGCCATGATAGCCTTAAGAATCATATGAAGAACTTCCATGGGTCAAAGCCGCCGCGCAATCATCCGCGAAATTTAATCTGCGATAAGTGTGGCAAAAAATTCAGCGGACGCACTTCTCTCTCGGACCATGTGCGTTCAGATTGTGGTCGAACGCCGGTTTACCAGTGCAGTGAGTGTGGGAAGCGTTTGTCGACGGCGGGCATACTCAAGACCCACATGCTGCTCCATAAGGCGGATACGCCCTATCAGTGCGATAAGTGTGGCAAGACATTCAAGGTAAAGGCACAGTACAAATCGCATTTAAAAACGCGTCACACGGACTTCAAGCCCTACAAATGCCatCTCTGTCCCAAGGAGTATCCCTATCGCGAGAGTCTTTTGACTCACATGACGGTGCACACAGGCATCAAGCGCTTTCTGTGCAACAACTGTGGCAAACGCTTCACTTGCATATCCAATCTCCAGGCGCATCGCAAGGTGCATGCAGATACTTGCGGCCAGCTGCCGCTTAATACAAAGGCCACCGCATATATGGGTGTGCAGCGCGGCAAGTTGTTAATAGGCGCCAAACCTGAAGCCGGTATGGAGTACGAGGAGACCAAGACATTAATAGCGGAGGAAGTGCTCGACCGAGATATGCCTATGGCACAGGAGCTGAATTTTCCCTCAGAGCCTTCAGCGCCCATGGCTACAGTGCCCCTAAACTATGCCTCCTCGCATTTAGTGCCACATATTATGCTGCAGACCATGCAGGCGGAGGCGCGCCAAGCACGAGATTAG
- Protein Sequence
- MDNASSSKKTNNVHTVTISLDAIPKLHCPICSKAWSSLAGYAKHVKKHEPPGGFLCNHCIARFCHDDDLKEHMKTHKTVKCSSCTDSADYSIAEYRTHLTEYHNGQNKLFVCTKCGVECRSSEPYKRHSETNCVTKQTFKCQHCDMSFAAKYNLNLHIKSLHTKKSRFRCTFCGFYASQKSELVQHERTHKAKKPFKCEVCGQCFPNRESYVTHSSVHTGVRLVECKCCHVRFSCHSNLLKHRKSRPGTCGRYVYDTPNDNDLPPPQVNKLSKSNSRMSRRSARRAVYESSSSEDEREFMTASCASESDDDVPLASRLRAKPKVEAQHNGYSESDDDFPDFEPDNSENEDEVADIKLPAPAKIKEEAYDTDFEYQDASLFVRTTCEVKQEGSISEIFTNEKDKLLDVLLNTNAASNNLRPFESLKVERSSGILDEIADVPMLETPETEFVEEDVLALKELSDEDDTLFEISKKLKAKAKKQPKTKLQPNPENEVTIKRKYRKRGTARTPSPQSSKDVPKRVAKLTKKELTERLRMINKVERSWKCPHCVKIYHIRKPYEKHLRVDHKLSETDIKDIFKDSDAHEKLAEEVFKCKICGKIYLLEKRLETHMSVHGENGTLTFKCPCYCNIFFATKEEATEHAHKQHKDLLYCELCDKYMTGHDSLKNHMKNFHGSKPPRNHPRNLICDKCGKKFSGRTSLSDHVRSDCGRTPVYQCSECGKRLSTAGILKTHMLLHKADTPYQCDKCGKTFKVKAQYKSHLKTRHTDFKPYKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNTKATAYMGVQRGKLLIGAKPEAGMEYEETKTLIAEEVLDRDMPMAQELNFPSEPSAPMATVPLNYASSHLVPHIMLQTMQAEARQARD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336948;
- 90% Identity
- -
- 80% Identity
- -