Cfus007350.1
Basic Information
- Insect
- Chymomyza fuscimana
- Gene Symbol
- -
- Assembly
- GCA_949987675.1
- Location
- OX465088.1:102346018-102352663[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.00029 0.03 15.3 4.0 1 19 365 383 365 388 0.90 2 26 5.3e-05 0.0056 17.6 0.3 2 23 396 417 395 417 0.95 3 26 4.5e-05 0.0046 17.9 1.3 1 23 558 581 558 581 0.97 4 26 0.06 6.2 8.0 0.6 1 19 588 606 588 609 0.94 5 26 0.022 2.3 9.4 2.5 1 23 618 641 618 641 0.91 6 26 4e-05 0.0041 18.0 2.1 1 23 647 670 647 670 0.97 7 26 5.9e-05 0.0061 17.5 1.2 2 23 678 699 677 699 0.96 8 26 0.00058 0.06 14.3 0.1 2 20 726 744 725 746 0.94 9 26 0.014 1.4 10.0 1.1 1 23 796 819 796 819 0.97 10 26 0.09 9.4 7.4 1.5 1 23 856 879 856 879 0.96 11 26 2e-05 0.002 19.0 2.2 2 23 911 933 910 933 0.94 12 26 0.0035 0.36 11.9 0.0 1 23 940 962 940 962 0.98 13 26 0.00034 0.035 15.1 0.9 2 23 969 990 968 990 0.98 14 26 3.6e-05 0.0037 18.2 1.6 1 23 996 1018 996 1018 0.98 15 26 9.5e-05 0.0099 16.8 6.9 1 23 1024 1046 1024 1046 0.98 16 26 4.5e-05 0.0046 17.9 1.3 1 23 1152 1175 1152 1175 0.97 17 26 0.06 6.2 8.0 0.6 1 19 1182 1200 1182 1203 0.94 18 26 0.022 2.3 9.4 2.5 1 23 1212 1235 1212 1235 0.91 19 26 4e-05 0.0041 18.0 2.1 1 23 1241 1264 1241 1264 0.97 20 26 5.9e-05 0.0061 17.5 1.2 2 23 1272 1293 1271 1293 0.96 21 26 0.00058 0.06 14.3 0.1 2 20 1320 1338 1319 1340 0.94 22 26 0.014 1.4 10.0 1.1 1 23 1390 1413 1390 1413 0.97 23 26 0.09 9.4 7.4 1.5 1 23 1450 1473 1450 1473 0.96 24 26 2e-05 0.002 19.0 2.2 2 23 1505 1527 1504 1527 0.94 25 26 0.0035 0.36 11.9 0.0 1 23 1534 1556 1534 1556 0.98 26 26 0.00034 0.035 15.1 0.9 2 23 1563 1584 1562 1584 0.98
Sequence Information
- Coding Sequence
- ATGAGGCTGCCGACAATATGTAGGACGACTTGCGATACAAAACATTGCGATACCTTATACAATCTCGCGACGCCCACAAATCAATATCCTGAGAAAATGCTCTTGGATCTTTTAACAGAATTGATCGGAATTAATGTTAATGAAACGCAAGCACAAAAACTTCCACAAGTTCTCTGTAGCAGTTGCACACCGAAGTTAATTGATGGCTATTACTTTGTTAATCAAGCTCGAACAGCCAATGAAATGTTAATGAATCACTTGCTTAACAGCCAGGTAACTGATCCCTCACACTGCATCCAGAATTTCGGGGTTGAAATCAAAACAGAAGCCAAAGACTATGAAGTAGATAATGCTACAATCTGCATGAATCAACCAGAATTGGCGCAGTTTCAACAGGCTGAGGACGACACATTAATATTACCTGATGCAATTAAACAAGAGCAGGATACGCAAATGTCCTTAGCAGGCTTATTTGTAACAGGTAACGCTACCCAAGGTTACAAAGACGAACTATTAATGTCACCAGAGGCACTGAAACAAGAGCAGGATACGGAAATGTCACCTAtagaatttaatgcaaataaccCTAGGAATGGACACGAGGACGATGATTCTTTGGATCGCTCGGTGAGGCTGATTCCGTATACGGAGCTGCCTAAGTCAGACACATTCCAACAGTCAGAATTTTTTGGTATGTCATATGGAAATGGCGTAAATAGTAGTAAAAAAGCAATGGGCACACAATTAATATCACCAAAAGAACTGAAGCAAGAGCAGGATGCAGACTTGTCCGCTACAGACTTAGATGCCACAGATATCTCTAGTCAAGGTTACGACGATGATGATTCGTTAGACCGCTCGGTGAGGCTTATACCATGTACAGTGCTACCAGATTCAGAACTATTTCATCAGGGCAAGCAATTAATGTCATCAAGAGCACTTCAGCAAGAACAGAATACGGATATATCCTATACAGGATTAGAAGCAACAGATGCCCACGGCCAGGATTACGTGAACGATAGTTTCTGGAGCTCACTAAACGATTTACAACAGCGCAAtcttaagttgaaaaaaaagagagctAAGAAAAGGTATAATTGCTATGAATGTCCCAAAAGTTTTAGCCGTGCAGATTACCTAAAACGTCATTGCTCACGCACACATATACCAAAATCGGATTGGCTTCCCTGTACGTTTTGCGATCTCAAATTTAGCCGAAGCGACGCGCTGCAAGCCCATCTAAAAGATCATCGAGATCCGAAAAGTTTGGCGAATCGCAATGAAGGGAAAAAGGTCAAGGACATAGACTTAAATCTTTGCAAGCCACATGGTTCTAAGCTTATTGAATGCATGATTTGTCACAGCAAATTCGATAAGATAATACAATTACGATGCCATTTGGAGCAGCATCCtgacatatttaattttgaagatcAACACAAGCTGAGGGCTCATGAGCTTGCGGAATTGTTGTATTCTGATTTAATGATACAATCTTCGGAGCATCTGCAAGATCTTATATTCAAGGAGTTAGCATCTGGCGCCTACCAACGATTTTGTTCCATTACCAACCAGTTTGGTCACGAAATAAATTTGGACAGCTCAGAAACCGAAAGCGATGAGGAATACGAAGTgggcgaaaaaaaaatcaaaagaactCAAAAAGAGGAATATATGTGCGAACTATGTCAGCAGAGTTTCCCACGTAAATATCAGCTTTATGATCATCAACGTCTGTCACATTCCTGGTCCGAGGCTCCTCATGTTTGCGGACGCTGTGATATGCGCTTTGTTAGCTTGCAACTGCTACAACATCATAACGACTCCCAGTGCAAGAATGCGCAGAAGCGTTATTCGTGCAGCAAATGTCCCTTGCGATTTCGCTGGAAGCATAATCTTAAAGCGCACTCTCAGGATAACCACATTACAaaccAGACTTTCGAGTGCCACGAATGTAAACGGgtctttgacaaaaaaaaatcgctgaCTGTGCATTTGCTTAGTGTTCATGCTGACGAATCCAAACTTATACCTTGCCAATGGTGCAACCGCAAGTTCTATCGTCGTGACTACTTGGTCAAGCACCTCAAGCGGCACGGCATTAATGAACAGGACATACCATTGGCCGAAACGCTCATTGCCGCCACTTCGAAACCAAATGGTCCAAAGATCATTACCTGCAAGATTTGCAATATACAATTTAGTCGTATCAGTGATTTGCGTTCTCATATTGAACAGGATCTTAAGTCAGAACATTCATTACATCAGAATTTAAAATCATTGGAGAATTACTCCATAACAAATGATTCTGGATTTGAACTACAGCTGGATGACTCAGAAACAGAAGATGAAGGCAATACTGTTTCCGATAATGCACCTTCGATTTATGCTTGTGGCGTGTGTCAGGTACAATGTCGACGCAAGTATGAAATGATACAACATCAAAGCACTATTCATCGCTTTGACAAAATCCCATATAACTGCGAGCGTTGCATATTCAAGTGCGTTTCCAAgAAAATAATGGACCATCACAAGCAAGTGCAATGTCTATGTGAGCAAAAGAAACATGTGTGTAGCAAatgtagttttaaatttatgtggCCTGAAAATTTGGAAAAACATGTACAATCCCAGCACGGTGGCTGGCAAGAGGAAAAGTCTGACAACACCTCACTAGCGGCTAAAtcggaaattaaaaaatgtgattcTGAAGCTGGCATACAAGTGCTCAGTTGCCCACACTGTGATAGAACCTATAAGCGGAAGTCGCGGCTCAGCAATCACATACGGGATGTACATATCAATAAGAAAAAGACGTTCGTGTGCTCCGTATGCGGCAAAGACAAGCCTTCGGCTGGAAGTTTAGTTGCACACATGAAGCGTCATACGGGCGAGAAACACGTTAAATGTAATATGTGCGAAATGTCATTTCCTAGTCATTCCGAAATGGTAGCCCATAGACGCATGCATACAGGTGAAAAACCATTCCATTGTACAGTTTGCGGGAATGATTTCTCAAGTGTTTCTAATCTGAAAAGACACGTTTTGACGCACAGTGATTTAAAACCGtacaaatgtaatttttgtgacAGGTGCTATCGACAGGCCCATGGTTTAAAAAATCACATGAAACAACATAGTAATGACAAATTCGATAAGATAATACAATTACGATGCCATTTGGAGCAGCATCCtgacatatttaattttgaagatcAACACAAGCTGAGGGCTCATGAGCTTGCGGAATTGTTGTATTCTGATTTAATGATACAATCTTCGGAGCATCTGCAAGATCTTATATTCAAGGAGTTAGCATCTGGCGCCTACCAACGATTTTGTTCCATTACCAACCAGTTTGGTCACGAAATAAATTTGGACAGCTCAGAAACCGAAAGCGATGAGGAATACGAAGTgggcgaaaaaaaaatcaaaagaactCAAAAAGAGGAATATATGTGCGAACTATGTCAGCAGAGTTTCCCACGTAAATATCAGCTTTATGATCATCAACGTCTGTCACATTCCTGGTCCGAGGCTCCTCATGTTTGCGGACGCTGTGATATGCGCTTTGTTAGCTTGCAACTGCTACAACATCATAACGACTCCCAGTGCAAGAATGCGCAGAAGCGTTATTCGTGCAGCAAATGTCCCTTGCGATTTCGCTGGAAGCATAATCTTAAAGCGCACTCTCAGGATAACCACATTACAaaccAGACTTTCGAGTGCCACGAATGTAAACGGgtctttgacaaaaaaaaatcgctgaCTGTGCATTTGCTTAGTGTTCATGCTGACGAATCCAAACTTATACCTTGCCAATGGTGCAACCGCAAGTTCTATCGTCGTGACTACTTGGTCAAGCACCTCAAGCGGCACGGCATTAATGAACAGGACATACCATTGGCCGAAACGCTCATTGCCGCCACTTCGAAACCAAATGGTCCAAAGATCATTACCTGCAAGATTTGCAATATACAATTTAGTCGTATCAGTGATTTGCGTTCTCATATTGAACAGGATCTTAAGTCAGAACATTCATTACATCAGAATTTAAAATCATTGGAGAATTACTCCATAACAAATGATTCTGGATTTGAACTACAGCTGGATGACTCAGAAACAGAAGATGAAGGCAATACTGTTTCCGATAATGCACCTTCGATTTATGCTTGTGGCGTGTGTCAGGTACAATGTCGACGCAAGTATGAAATGATACAACATCAAAGCACTATTCATCGCTTTGACAAAATCCCATATAACTGCGAGCGTTGCATATTCAAGTGCGTTTCCAAgAAAATAATGGACCATCACAAGCAAGTGCAATGTCTATGTGAGCAAAAGAAACATGTGTGTAGCAAatgtagttttaaatttatgtggCCTGAAAATTTGGAAAAACATGTACAATCCCAGCACGGTGGCTGGCAAGAGGAAAAGTCTGACAACACCTCACTAGCGGCTAAAtcggaaattaaaaaatgtgattcTGAAGCTGGCATACAAGTGCTCAGTTGCCCACACTGTGATAGAACCTATAAGCGGAAGTCGCGGCTCAGCAATCACATACGGGATGTACATATCAATAAGAAAAAGACGTTCGTGTGCTCCGTATGCGGCAAAGACAAGCCTTCGGCTGGAAGTTTAGTTGCACACATGAAGCGTCATACGGGCGAGAAACACGTTAAATGTAATATGTGCGAAATGTCATTTCCTAGTCATTCCGAAATGGTAGCCCATAGACGCATGCATACAGGTGCTATCGACAGGCCCATGGTTTAA
- Protein Sequence
- MRLPTICRTTCDTKHCDTLYNLATPTNQYPEKMLLDLLTELIGINVNETQAQKLPQVLCSSCTPKLIDGYYFVNQARTANEMLMNHLLNSQVTDPSHCIQNFGVEIKTEAKDYEVDNATICMNQPELAQFQQAEDDTLILPDAIKQEQDTQMSLAGLFVTGNATQGYKDELLMSPEALKQEQDTEMSPIEFNANNPRNGHEDDDSLDRSVRLIPYTELPKSDTFQQSEFFGMSYGNGVNSSKKAMGTQLISPKELKQEQDADLSATDLDATDISSQGYDDDDSLDRSVRLIPCTVLPDSELFHQGKQLMSSRALQQEQNTDISYTGLEATDAHGQDYVNDSFWSSLNDLQQRNLKLKKKRAKKRYNCYECPKSFSRADYLKRHCSRTHIPKSDWLPCTFCDLKFSRSDALQAHLKDHRDPKSLANRNEGKKVKDIDLNLCKPHGSKLIECMICHSKFDKIIQLRCHLEQHPDIFNFEDQHKLRAHELAELLYSDLMIQSSEHLQDLIFKELASGAYQRFCSITNQFGHEINLDSSETESDEEYEVGEKKIKRTQKEEYMCELCQQSFPRKYQLYDHQRLSHSWSEAPHVCGRCDMRFVSLQLLQHHNDSQCKNAQKRYSCSKCPLRFRWKHNLKAHSQDNHITNQTFECHECKRVFDKKKSLTVHLLSVHADESKLIPCQWCNRKFYRRDYLVKHLKRHGINEQDIPLAETLIAATSKPNGPKIITCKICNIQFSRISDLRSHIEQDLKSEHSLHQNLKSLENYSITNDSGFELQLDDSETEDEGNTVSDNAPSIYACGVCQVQCRRKYEMIQHQSTIHRFDKIPYNCERCIFKCVSKKIMDHHKQVQCLCEQKKHVCSKCSFKFMWPENLEKHVQSQHGGWQEEKSDNTSLAAKSEIKKCDSEAGIQVLSCPHCDRTYKRKSRLSNHIRDVHINKKKTFVCSVCGKDKPSAGSLVAHMKRHTGEKHVKCNMCEMSFPSHSEMVAHRRMHTGEKPFHCTVCGNDFSSVSNLKRHVLTHSDLKPYKCNFCDRCYRQAHGLKNHMKQHSNDKFDKIIQLRCHLEQHPDIFNFEDQHKLRAHELAELLYSDLMIQSSEHLQDLIFKELASGAYQRFCSITNQFGHEINLDSSETESDEEYEVGEKKIKRTQKEEYMCELCQQSFPRKYQLYDHQRLSHSWSEAPHVCGRCDMRFVSLQLLQHHNDSQCKNAQKRYSCSKCPLRFRWKHNLKAHSQDNHITNQTFECHECKRVFDKKKSLTVHLLSVHADESKLIPCQWCNRKFYRRDYLVKHLKRHGINEQDIPLAETLIAATSKPNGPKIITCKICNIQFSRISDLRSHIEQDLKSEHSLHQNLKSLENYSITNDSGFELQLDDSETEDEGNTVSDNAPSIYACGVCQVQCRRKYEMIQHQSTIHRFDKIPYNCERCIFKCVSKKIMDHHKQVQCLCEQKKHVCSKCSFKFMWPENLEKHVQSQHGGWQEEKSDNTSLAAKSEIKKCDSEAGIQVLSCPHCDRTYKRKSRLSNHIRDVHINKKKTFVCSVCGKDKPSAGSLVAHMKRHTGEKHVKCNMCEMSFPSHSEMVAHRRMHTGAIDRPMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -