Cfus016260.2
Basic Information
- Insect
- Chymomyza fuscimana
- Gene Symbol
- pol
- Assembly
- GCA_949987675.1
- Location
- OX465089.1:83028646-83064540[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.1e-11 5.8e-08 32.9 0.0 1 40 1444 1484 1444 1487 0.90 2 4 1.7e-13 3.2e-10 40.1 0.1 2 39 1499 1536 1498 1539 0.94 3 4 4e-17 7.5e-14 51.7 0.0 1 45 1553 1598 1553 1598 0.98 4 4 8.2e-20 1.6e-16 60.3 0.0 1 45 1605 1650 1605 1650 0.97
Sequence Information
- Coding Sequence
- ATGGATTTAATAAACGCAAATGACTACACATATAACGAACTCCGGGACTGGTGCAGAAGTTTGGATTTGCCGTCCCATGGTACTAAAAGTTCTTTGGCAGCGCGTCTGAACGAGTTAAATAGCGTCAATCGAGGCCAATGTCCCAAAAATGGTGAATCAATCCCAGAGGAAGGCGTTCAGAAAATATGTTCTGTAAAAATAACCGATGTACAAACTTTTGAGCAGCAGCCACCAGAATCAGAAGCAACGGCaagcaaaaagcaacaacaacgtgcAAAGGAAACGGCAAACGAAGAGCAGCAAAGTGGTGAACTTACCGCTATGATCGAAGAGCAACAACAGCATATACATGTAACAGCAAATGATGAGCAGCAAAGCTACGGTTATCTGGTGACAAACGAAAAGGAACAACAATGTACAAATGATGCGGCAAAAGACGAGCAACAGCGTGAAGAAATGTCCGTTATGAACAAAGAGCATACAAATGTAACGGCAAATGGTGATGAGCAAAGTAACGAAATTCCAGTGGTCAACGAAGAAGAGCGAAGGCGGGCAAATGAAGCGACAAACGAAACGGCAAATGAAAAGGAACAAGAACGTACGAACGAAGCAGCAGGCACAATGCAGCAAAGGCTACCAATTTCAAGGTCAGGAGAGAGTAATCTACGTAGAGGAACGACGAGTGACGAATTAAGAGAGCTAACTCTAGCACGCAAAGAACTAGAACTGCTACGTTTTGAGAGCGAGCTATTACGAAGAGAAAATGAATTGCTTAAGCCAACGAGGGCTGCAGTAACCACTCGTTCAGCTAATGATGACATACCGTTTCAAAGTTTAAGAGAGCTGTTTCCAGATTTCGACGGTGAGACGAACATTAAAGTATGGCTGTCACATGTCAATACACTAAAAACAACGTATGGTCTGGATGGAAATAAACTACGCGTgcttatttttggcaaattgaaGGGTAAGGCACAATTATGGCTCAATAATAACCCGAATTTCGCACAGGAACCTATTGATACTGTTTTCGCCACAATGGAAAAAGTATTTGCATCAAAAGAGAGCGCCATTGCATTGCGAAAAAATTTTGAGGCTCGCAACTGGTGTCCGGGCGAGTCGTTTTCAACATATTTCAATGATAAGCTGACACTTTCAAATGGTATCCAACTCTCAGAGGGCGAGTTGATTGAGTACATCATACATGGAATACCAGACAGGCAAATTCGGATGAGTGCCAACATGATGTGCTTTGAGTCTAAAGATAATCTTTTGGCGGCATTCTTACATGTCGATCTGCGATTGTCACAGACTGCAGGATACACCAGAGCTACTGGAGAGTATAAGCCGACCTTCCGCTGCTACAACTGCAACTGTTTAGGCCACATCGCTGCGGACTGCAGAAAACCGAGACGAGAGGTTGGTTCTTGTTTTGCTTGTGGCGAAATGGGTCATCGTGCAGCGACTTGCAGCCGCAACAAGAGGGTTACTAACGAGATGACCCACGATTATCATCCTGTATTGTTGGGTAGGGATTTTTTGCGTTTAAGTAATGCTAAACTGATATGGCCAAATGATAGTGAAGGCAATGATACTAAGGAGAGCCCAAGTTCAAAAGATGAGTCGAATGATAGTCAAGATTTTGAAAGGAAAATACTAATGATAGAATACGATGTAAACGATGTCGACATTACAATTGGAGGAAAATTAAGTCAAATCGAAAATGATCAGTTTAGAGAAATATTTGATAAATGTTATGTAAAACCAGACCGTCCAAGTGAACCCGAAATGAAATGTGAAATGAAGATTACCTTAAATGACCCAAAGCCATTTAGCTGTAGCCCACGGCGCCTGTCATACACTGAAAAGAATgagttgcaaaaaattttggatgAGTATTTGAGAAAAGGCTATATTAGGGCAAGCGAGTCCGAGTTTGTATCACCGATTGTGCTGGTTAAAAAGACATCTGGAGAGCTTAGGATGTGCATTGACTTTAGGAAACTTAATAAGATGACGGCAAAAGACAGCTATCCTATTCCTTTGATTGATGATTTATTAGATCAATTGGCAGGCAACAAATTTTTCACCAAACTGGATTTGAAAAACGGCTTTTACCATGTATTTATGGAGGAACATTCCGTGAAGTACACTTCGTTTACGACCCCTTTAGGCCAATATGAGTTTCTGAGAATGCCATTTGGCTTGAAAAATGCACCGTCCACATTTCAGAGGTTTGTTAATAAAGTTTTCAATGATTTGATTAAGGACCGAAAAGTTATAGTATACTTGGATGATATCATGATAGCAACAAAAGATTTGAGTAAACATTTTGAGATTTTGAGGGAAGTTCTTGATAGGCTTGTTAGAAACAAACTGGAGTTAAGACTTAGCAAATGCGAGTTCTTTCAAACAGAGGTAAAATACTTAGGCTACACCATCACGGGCAATGGCATAAAGGCGGACGGGAAAGTTCATGGCATGTTGTTCAATAACGGCTCTGGCGCTGCTTCAATCAGCGACGATGTCGACAATGACGACTGCGACTACAACGAAGACGGAGACGTCGACAGCGACGCAGCAATTTACCCAGCCATGCATATTAAGCCTCACGATTTGTTTctatgtGGTCTGCTACGTACCGCCGAACAGTTGAAAATCAAAGGTCTCTGTGAGACAGCCGAAAATGCGGACGATTTGAATGATGCAGCCACCGCAACTATAACCCTATCAGAGAATATACAGCAAGCGGTTGTTGGTAATATAGTTAACGCCACCATAGTGCCAGGTGCGCCTTCACCCACGcccgaacaacaacaacaacaacagcagcaacagcaagaacagcagcaacaacaacaacagcagcagcaggtgcacttgcaacaacaacagcagcaacaacagcaacaacacttGGTAAACGCCGCGCTGCTAACGCATTCCAACCTCGTTGGTAACAGTGGCGTACAATTGGCAAACGCTGGCCAACTTTTAAGCAGTAATACAGCAGCTagtggcagcaacagcagcagcagcagcaatctaCAGGGAGTACAACCAGGTGgaggagcaggagcagcagttgccacacaacagcaacagcagcaagtgGCGCGCAAATCACGTCAACGTAAACGCTCCAAATCACCAGATTTGCAGCTCCAAAGCACCAGCCAAGCCTCACAGTCGTCACAGTCTGCAGCATCACATCATACGCATCACCAGTCGCAGACCATACTGATACAAAGTCAAAATCAAACGTCCATAGTAAGTCTGCATCAGACCGCAGACGGAAATTATATACCAGTAACAGCGACGGGTGAGGATTCTGATAGTGAGAAGCCGACAAAGATCTGCAAGACAGAGACATCGGTTGCATCGCCGCAATCCAATTCATCGACCTCAAATAATGCTGCTGGCGTGACCGGCGTGACAGCATCGGGTCAAGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAATGGAGGCCTTTTAGGCGTGCCCATGGGATTTCTGGATTTTACACCCGAACCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAACACGTCGATCTATCCTGCAATCCAAGCACGGATACGCGTGATCTATCAAACCCCACCGAACCGCTTGACATAGACAATCATTTGGCGCAACAAATTCATAGGCTCGATCAATCACCCATGCACTCGATATCGCATCATCACACTGGCGACGAAAGCAATTCGAATCTCGTGCAGCACATAAAAAGCGAAGTTATTGAGGCCAAGCAGCTGGCTGCACAGCATCATGCGCATGTCCAAGCACAGCAACATGCGCATCATCATCAGGCGCAGCAACATCATTTGCATACGCAACAATTGATGGCACAGAGCCAggcacagcagcagcatcatcagcagcagcaacagcagcagcaacaacagcaggcaGCGGTGCATGCACAGCATGCATCACATGCCACACATGCTGAGATTAATGCTGCCACTGTCATGGAGATTGATCCGAGCCAAATAAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAACATGATGTCCTCAGGACATATGGATATGTACAACTCCGATACGAGCGAGGACTCAATGATGATTGCAAATGGTTCACCGCATGATCAAAATGAACCGCATTATACGAATTTGGATCAACAGCATGGTGGTCTTGGCAGCAGCGGTGGCCCTGGTGCCGGCGCTGGGGCTGgtgctggtggtggtggtggtagcGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCCTCAACCACTCTCTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCAAAGAAGGAGGGCGGCACTAAATCATGGAATGAAGATGCATTACAGAATGCCTTGGAAGCACTACGCTCTGGACAGATATCGGCTAATAAAGCGTCCAAAGCCTTTGGTATACCATCATCGACATTGTATAAAATTGCACGTCGTGAGGGTATACGTTTGGCTGCGCCATTCAATGCCGCCCCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTGGAGGCGATACGCGCCGGTAATACATCTGTACAAAAAGCTAGTGCTGAGTTTGGCATACCAACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATTGAACTGTCGCGTTCGAATCCAACACCATGGTCGGAAGATGCCATGAACGAGGCATTGAATTCAGTGCGTGTCGGCCAAATGTCCATCAATCAGGCGGCTATACACTACAACCTGCCCTACAGCTCGCTTTATGGACGCTTCAAGCGTGGCAAATACGATGTAAGCAACATCAGCGGAGTATCTCTGAATAATACATCGGGCAATACAACCGGCAGCATTGAAATTATTGAACATAGTCAAGAGAACTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCCTCGCCGCATCCAACGCCGCAACATCACAGCACGCCGCAAGGGCCGCCAACGCCTCAGCATATGCAGCAACATGTCGTGCACATGCAACAACAATCGCCGCATCAATCGCATGGTCATCAGCAACatatgcagcagcaacaacaggaTGTGGTAACATCCAGCAGCCAGGTGGTGCACGCtagccaacagcagcagcagcaacaacaacaacagcaacagcaacaagaacagcaacaagaacagcaacaacGGCAGCAGCTTCTGCAGATCTATCAGCATCATGGTACGCCGGAGCGTAGTTGA
- Protein Sequence
- MDLINANDYTYNELRDWCRSLDLPSHGTKSSLAARLNELNSVNRGQCPKNGESIPEEGVQKICSVKITDVQTFEQQPPESEATASKKQQQRAKETANEEQQSGELTAMIEEQQQHIHVTANDEQQSYGYLVTNEKEQQCTNDAAKDEQQREEMSVMNKEHTNVTANGDEQSNEIPVVNEEERRRANEATNETANEKEQERTNEAAGTMQQRLPISRSGESNLRRGTTSDELRELTLARKELELLRFESELLRRENELLKPTRAAVTTRSANDDIPFQSLRELFPDFDGETNIKVWLSHVNTLKTTYGLDGNKLRVLIFGKLKGKAQLWLNNNPNFAQEPIDTVFATMEKVFASKESAIALRKNFEARNWCPGESFSTYFNDKLTLSNGIQLSEGELIEYIIHGIPDRQIRMSANMMCFESKDNLLAAFLHVDLRLSQTAGYTRATGEYKPTFRCYNCNCLGHIAADCRKPRREVGSCFACGEMGHRAATCSRNKRVTNEMTHDYHPVLLGRDFLRLSNAKLIWPNDSEGNDTKESPSSKDESNDSQDFERKILMIEYDVNDVDITIGGKLSQIENDQFREIFDKCYVKPDRPSEPEMKCEMKITLNDPKPFSCSPRRLSYTEKNELQKILDEYLRKGYIRASESEFVSPIVLVKKTSGELRMCIDFRKLNKMTAKDSYPIPLIDDLLDQLAGNKFFTKLDLKNGFYHVFMEEHSVKYTSFTTPLGQYEFLRMPFGLKNAPSTFQRFVNKVFNDLIKDRKVIVYLDDIMIATKDLSKHFEILREVLDRLVRNKLELRLSKCEFFQTEVKYLGYTITGNGIKADGKVHGMLFNNGSGAASISDDVDNDDCDYNEDGDVDSDAAIYPAMHIKPHDLFLCGLLRTAEQLKIKGLCETAENADDLNDAATATITLSENIQQAVVGNIVNATIVPGAPSPTPEQQQQQQQQQQEQQQQQQQQQQVHLQQQQQQQQQQHLVNAALLTHSNLVGNSGVQLANAGQLLSSNTAASGSNSSSSSNLQGVQPGGGAGAAVATQQQQQQVARKSRQRKRSKSPDLQLQSTSQASQSSQSAASHHTHHQSQTILIQSQNQTSIVSLHQTADGNYIPVTATGEDSDSEKPTKICKTETSVASPQSNSSTSNNAAGVTGVTASGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKQLAAQHHAHVQAQQHAHHHQAQQHHLHTQQLMAQSQAQQQHHQQQQQQQQQQQAAVHAQHASHATHAEINAATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGSSGGPGAGAGAGAGGGGGSEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNISGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPTPQHHSTPQGPPTPQHMQQHVVHMQQQSPHQSHGHQQHMQQQQQDVVTSSSQVVHASQQQQQQQQQQQQQQEQQQEQQQRQQLLQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -