Ccos004357.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- pnr
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000112.1:1058838-1091651[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-18 1.3e-14 53.6 3.2 1 34 121 153 121 155 0.97 2 2 3e-19 9.3e-16 57.2 5.8 1 35 175 208 175 209 0.98
Sequence Information
- Coding Sequence
- ATGTACCACGCGGGCGCCGCTGCGGCCGCTTACACAGACATCGCAGCTGGTGGTGCGGCGGGTGGTACAGTCTCCGGCTACCATCCTCAACAATCCATTAATACACCCGTCTATGTGCCTTCTAATCGTGCTTTAACCAACAGCCAGTATAACCATATGCATTTCGGCAATCCGGCTGCACAAAATGCCTGGACAACGGATAGTTTTGGAAACGCGCATGCCCAACTACCAGCGCAGTTTTACGCACAAAACGCCGCTGTAATGATGGGGCCATGGCGAAGCGCGTACGATCCGACCGGATTTCAACGCTCCTCGCCCTACGAGAGCGCAATGGATTTTCAATTCGGCGAAGGTCGAGAATGTGTTAACTGTGGCGCAATATCCACTCCACTATGGCGACGTGACGGTACGGGCCACTACTTGTGTAATGCTTGTGGTCTCTATCACAAAATGAACGGCATGAATCGGCCATTGATAAAACCGAGCAAGCGATTGACTGCTTCGCGTCGACTGGGATTGTGTTGCACAAACTGTGGTACGCGGACTACCACTCTCTGGAGACGCAATAATGACGGAGAGCCGGTGTGCAATGCATGTGGGCTATATTTTAAGCTTCATGGGGTTAATCGACCGCTAGCTATGCGTAAAGATGGCATACAAACACGAAAACGAAAGCCCAAAAAAACAGGCAGCGGTAATGGACCGACTTTGGGCAGCGTCAATTCGGGCACAACTCCAACCGCTATTAAAGACTGCAAAGAGGAGCGTGAGCACAAGCCCACCCTCAGTATTAGCCCAGTGGAGCGTCAGAACCTACAGGGCAGCTTAAGCAAACTTCATACTGAACTCAAAAGTTCATTGATTGGCGGGAATTTTGGTCCAGTAAGCTCATCCAGTGCAGCGCTACATGGAACATTAAGCCAGCATCATACGCAGCAACACCAATCCCACCAACATTGTTTTCCACACTATTCTCAGCAAGAACACCACCCACATCAACAACAACACCTATCAGCACAGCAGGCACAGCCCAACGACGCTGCTCCAGGCAATACAACAATGCACGGACTGCAACTAAATGGCTCTGGGGTGCATTTGTACTCGCCATCTTCGCTGCAAAACCAAATCAGAAACTCATCCGCCTCTGCCTATACACCTAGTAAATACGAGCACCGTATGGCCAGCAACACCAGCGCTCACATTAGCAATGCAGTAACCAGTGTTTTAGAGAGCTCAGGCGGCACACACACACCAACTTTAAGCAACGGAACACCCTCACCACACTATCAACATCATTTGCATGTTCCCAGCAGTTCGCAAAACCATCATTCGCCTGCTGCACATCATATACACGCCGCAGCCGCAGCATATGGCGTTAAGACGGAGAGCAGTGTCAGCAACTATGACTACGTCAATAATTGTTATTTCGGTGCTTCGTTTGGGGCTCTCAGTGGTGCTTCAACCAGCATTGCTGGAGCTGCTGCCAATGAGCTGGCGGGCTACCACCATCAGCATAATGTCATACAGGCCGCCAAGCTAATGGCAACATCGTAG
- Protein Sequence
- MYHAGAAAAAYTDIAAGGAAGGTVSGYHPQQSINTPVYVPSNRALTNSQYNHMHFGNPAAQNAWTTDSFGNAHAQLPAQFYAQNAAVMMGPWRSAYDPTGFQRSSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLTASRRLGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYFKLHGVNRPLAMRKDGIQTRKRKPKKTGSGNGPTLGSVNSGTTPTAIKDCKEEREHKPTLSISPVERQNLQGSLSKLHTELKSSLIGGNFGPVSSSSAALHGTLSQHHTQQHQSHQHCFPHYSQQEHHPHQQQHLSAQQAQPNDAAPGNTTMHGLQLNGSGVHLYSPSSLQNQIRNSSASAYTPSKYEHRMASNTSAHISNAVTSVLESSGGTHTPTLSNGTPSPHYQHHLHVPSSSQNHHSPAAHHIHAAAAAYGVKTESSVSNYDYVNNCYFGASFGALSGASTSIAGAAANELAGYHHQHNVIQAAKLMATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339560;
- 90% Identity
- iTF_00339560;
- 80% Identity
- -