Ccos000265.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- -
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000803.1:2496762-2499679[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.8 3.8e+02 1.9 0.8 2 23 238 260 237 260 0.88 2 9 6.6e-05 0.0053 17.2 0.5 1 23 292 314 292 314 0.99 3 9 0.049 3.9 8.2 4.7 1 23 323 345 323 345 0.88 4 9 0.00094 0.075 13.6 1.0 2 23 354 376 353 376 0.94 5 9 1.1e-05 0.00088 19.7 0.1 3 23 384 404 383 404 0.97 6 9 0.00092 0.074 13.6 0.2 2 23 413 435 412 435 0.97 7 9 6.9 5.5e+02 1.4 1.8 2 23 444 466 443 466 0.87 8 9 2e-07 1.6e-05 25.2 1.2 1 23 472 494 472 494 0.98 9 9 2.9e-06 0.00023 21.5 3.6 1 23 500 523 500 523 0.98
Sequence Information
- Coding Sequence
- ATGGAGTGCTTTTTATGCACACAAGGCTTAACTGCTAGTGTTGGTAACATCAGCTTTGATTCCGACGAAGCTAAGGCGTTGGACATGAGGAGCATTATTGAACTACACTTTTGGTTAAAGATTGAAAATGCAACCAGCAACATGAGCAATGTTTGCGCCATCTGCTGGGATCAATTGTGGTCGTTTCACAACTTTTATAAAAGTGTGGAAGTAGCGCACAAGGCTTTGGCCGAAAAGTCTTCAACAACTTGCCCGGATGCTGCCAGCGACAGTTTGGCCCAAGAAACTGCCTTGCTCTGCTCCGAAATTGTTAAAGTTGAGAGCGCTGATGTTGATAGCGTCGCAGCTGCAGTTAAGCGCAGGCGTGGACGTCCACCACGCCGACCTGTGCCCACACCCAGCCTAAATGCAACCGACAATGCTGAGTTTAAGTCCGTTTTGGAACAAATCAACTTGAGTGAAATTAAAATCGAGTTTCCCGAAGCTGATTTGACTATCGCTGATGTGCTAGAAGATCAAGAGGAGCATGATGTTTCCGATTTCTGGCAACAAAGTGCTGGCGACAGTGAAGATACGGAAGATGAACTGAACGATGATGTGAAGCCAGCAAAACCCAAGAAAAAATATAAGGCCAGACCAAAAGGAGCAGGCGTTTCAAACATGCAGAAATCTGATGAGTTCAATGAGTATATTAAGCAGCACTATAAAATTCAGTGTCATGTGTGCAGTCAACCAATGGAAGATTTCACGCAGATGTTGATGCACTCACGTAAAGTGCACAAACAACGCGGCTATGCCACCTGTTGCAATCACAAATTTTGGAAACGTGGTGTGCTTGTTGACCATTTACGTCGTCATCAGGATCCAGATCTTTTTAAATGCCAAATTTGTGATCGTGTAATGGGTCAGAGGCGCAGTTTGGAACTGCATATGCGTATGCATGAGATAAAATCACAGGGCAGGCGTTATAAGTGTGAACACTGCTCGAAGAGTTTTTACAGTAACATCGTTTGTAAACGTCATGCACTAATACACATTCCAAAGGAGCAGTGGCAAATACCCTGCACCGGTTGCGAAAAAATCTTTCCCAATCACTACACAATGACGCAACACTACAAGCTTACACATTTGAACATGTATGCCAAGATTTGCGATGTTTGTGGTAAATCCGTACGCGGGCGTGAAAATTTAGCACGCCATATGAAGGAGCACACAGGCGCTCCGCAGAAGACCATAAAATGCGAACTTTGCGATTCAATTCTGACCACAAAATATGGACTGGCACGGCACATTAAAATGATGCATACAGCAGAAAACTTGCAGCCAATGCAATGCGAAATATGTTTGAAAATCTCACCAACCTTGCAGGCACATCAGCATCATATAAAATATACACACAATACGGCACGTAGTCATCAGTGTCCCATGTGCGAAAAGGCCTTCAAGCGACCGAACGAGCTACGCGAACATATGACTACACATACTGGTGAAGTATTATACACGTGTCCTCACTGCCCAAAGACCTTCAACTCAAATGCGAATATGCATGCTCATCGGAAAAAAGTGCATCGTAAGGAATGGGAGGAGCACCGTCGTCGTTTGCCAAAGGTACCCAAGGATAACACAATAATAAGTGTCAGCGTACGCAAAACGACGGAGACTGCTGTATCTAAGACAACAGAACCAGAGCCAATCTCAGCTGACGATAATCCGAATCTTGAATGTTGA
- Protein Sequence
- MECFLCTQGLTASVGNISFDSDEAKALDMRSIIELHFWLKIENATSNMSNVCAICWDQLWSFHNFYKSVEVAHKALAEKSSTTCPDAASDSLAQETALLCSEIVKVESADVDSVAAAVKRRRGRPPRRPVPTPSLNATDNAEFKSVLEQINLSEIKIEFPEADLTIADVLEDQEEHDVSDFWQQSAGDSEDTEDELNDDVKPAKPKKKYKARPKGAGVSNMQKSDEFNEYIKQHYKIQCHVCSQPMEDFTQMLMHSRKVHKQRGYATCCNHKFWKRGVLVDHLRRHQDPDLFKCQICDRVMGQRRSLELHMRMHEIKSQGRRYKCEHCSKSFYSNIVCKRHALIHIPKEQWQIPCTGCEKIFPNHYTMTQHYKLTHLNMYAKICDVCGKSVRGRENLARHMKEHTGAPQKTIKCELCDSILTTKYGLARHIKMMHTAENLQPMQCEICLKISPTLQAHQHHIKYTHNTARSHQCPMCEKAFKRPNELREHMTTHTGEVLYTCPHCPKTFNSNANMHAHRKKVHRKEWEEHRRRLPKVPKDNTIISVSVRKTTETAVSKTTEPEPISADDNPNLEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339412;
- 90% Identity
- iTF_00338661;
- 80% Identity
- -